Wall clock time and date at job start Mon Mar 30 2020 03:52:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46614 * 2 1 4 4 H 1.09007 * 109.46797 * 177.95549 * 3 2 1 5 5 C 1.50702 * 109.47310 * 57.95701 * 3 2 1 6 6 H 1.07995 * 120.00182 * 239.99734 * 5 3 2 7 7 C 1.37878 * 119.99617 * 59.99910 * 5 3 2 8 8 N 1.31510 * 120.00692 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99775 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47058 * 59.99878 * 9 7 5 11 11 H 1.48492 * 109.47387 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.47096 * 300.00201 * 9 7 5 13 13 N 1.46897 * 109.47229 * 297.95392 * 3 2 1 14 14 C 1.46895 * 111.00073 * 273.78463 * 13 3 2 15 15 C 1.53005 * 109.46872 * 174.61367 * 14 13 3 16 16 H 1.09000 * 109.47044 * 304.99154 * 15 14 13 17 17 O 1.42894 * 109.47509 * 64.99535 * 15 14 13 18 18 C 1.53007 * 109.46795 * 184.99929 * 15 14 13 19 19 C 1.53781 * 113.61182 * 279.13210 * 18 15 14 20 20 C 1.53951 * 87.01968 * 220.05321 * 19 18 15 21 21 C 1.53775 * 87.11093 * 25.36179 * 20 19 18 22 22 H 1.09000 * 109.47363 * 294.45486 * 1 2 3 23 23 H 1.09000 * 109.46794 * 174.45726 * 1 2 3 24 24 H 1.08999 * 109.47583 * 54.45749 * 1 2 3 25 25 H 1.08998 * 109.46844 * 119.99595 * 2 1 3 26 26 H 1.08992 * 109.47214 * 240.00148 * 2 1 3 27 27 H 0.96993 * 120.00400 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99821 * 149.82231 * 13 3 2 29 29 H 1.09005 * 109.47061 * 294.60637 * 14 13 3 30 30 H 1.08997 * 109.47274 * 54.61152 * 14 13 3 31 31 H 0.96705 * 113.99856 * 59.99774 * 17 15 14 32 32 H 1.08993 * 112.85027 * 50.32952 * 18 15 14 33 33 H 1.09000 * 113.61492 * 334.56813 * 19 18 15 34 34 H 1.08996 * 113.61228 * 105.47276 * 19 18 15 35 35 H 1.09003 * 113.53532 * 270.81266 * 20 19 18 36 36 H 1.08994 * 113.74453 * 139.94599 * 20 19 18 37 37 H 1.09004 * 113.61674 * 220.09000 * 21 20 19 38 38 H 1.08998 * 113.61542 * 89.19417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 3.1293 1.4428 0.0367 5 6 1.4966 2.1675 1.2044 6 1 0.8795 3.0441 1.0740 7 6 1.7874 1.7114 2.4726 8 7 2.5384 0.6435 2.6314 9 14 1.1145 2.6103 3.9655 10 1 -0.3696 2.6105 3.9158 11 1 1.5677 1.9245 5.2022 12 1 1.6100 4.0102 3.9653 13 7 1.5910 2.1206 -1.2234 14 6 2.5280 1.8851 -2.3299 15 6 1.9616 2.4913 -3.6155 16 1 0.9645 2.0905 -3.7976 17 8 1.8866 3.9118 -3.4795 18 6 2.8754 2.1390 -4.7911 19 6 4.1130 3.0451 -4.9023 20 6 3.8949 3.0200 -6.4261 21 6 2.4128 2.7352 -6.1310 22 1 -0.3634 0.4254 0.9355 23 1 -0.3633 -1.0229 -0.0993 24 1 -0.3634 0.5974 -0.8362 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 2.7426 0.3225 3.5236 28 1 1.4619 3.1084 -1.0627 29 1 3.4862 2.3510 -2.1000 30 1 2.6684 0.8127 -2.4650 31 1 2.7395 4.3368 -3.3152 32 1 3.1070 1.0753 -4.8431 33 1 3.9741 4.0305 -4.4576 34 1 5.0373 2.5626 -4.5846 35 1 4.4066 2.1973 -6.9256 36 1 4.0668 3.9815 -6.9099 37 1 1.9665 2.0029 -6.8038 38 1 1.8082 3.6356 -6.0228 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315723667.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:35 Heat of formation + Delta-G solvation = -64.652742 kcal Electronic energy + Delta-G solvation = -16384.730525 eV Core-core repulsion = 13840.357765 eV Total energy + Delta-G solvation = -2544.372760 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.57550 -38.09300 -36.61969 -34.35947 -32.60920 -30.20314 -27.98526 -26.56100 -25.46768 -24.70538 -22.52726 -20.94458 -20.06929 -18.48685 -17.74425 -17.00118 -16.79254 -16.28487 -15.57129 -15.39532 -14.99084 -14.71645 -14.03808 -13.88133 -13.59320 -13.36369 -13.10490 -12.81371 -12.67981 -12.64498 -12.42136 -12.12463 -11.98655 -11.77962 -11.60073 -11.35896 -11.32977 -11.00678 -10.83223 -10.54940 -10.43858 -8.96594 -8.09418 -6.21650 1.42475 1.44017 1.51253 2.42864 3.18930 3.39248 3.59534 3.76517 3.82122 3.97731 4.02935 4.32601 4.47160 4.51375 4.63229 4.79205 4.80366 4.84997 4.91703 4.93609 4.94230 5.06403 5.10993 5.18555 5.29387 5.38422 5.45720 5.56802 5.64237 5.71529 5.81894 5.90363 6.27946 6.51389 6.80070 6.85721 7.05363 7.47198 8.95508 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.043933 B = 0.005748 C = 0.005537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.176156 B = 4870.463592 C = 5055.537111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.098 4.098 3 C 0.221 3.779 4 H -0.038 1.038 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.018 3.982 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.679 5.679 14 C 0.036 3.964 15 C 0.131 3.869 16 H 0.093 0.907 17 O -0.567 6.567 18 C -0.144 4.144 19 C -0.143 4.143 20 C -0.132 4.132 21 C -0.129 4.129 22 H 0.030 0.970 23 H 0.035 0.965 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.021 0.979 27 H 0.261 0.739 28 H 0.333 0.667 29 H 0.016 0.984 30 H 0.063 0.937 31 H 0.376 0.624 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 3.357 -14.708 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.136 4.136 3 C 0.112 3.888 4 H -0.021 1.021 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.780 3.220 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.310 5.310 14 C -0.094 4.094 15 C 0.072 3.928 16 H 0.111 0.889 17 O -0.375 6.375 18 C -0.163 4.163 19 C -0.180 4.180 20 C -0.169 4.169 21 C -0.167 4.167 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.151 0.849 29 H 0.034 0.966 30 H 0.081 0.919 31 H 0.226 0.774 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.049 2.616 -14.849 15.114 hybrid contribution 1.226 0.727 1.546 2.103 sum 2.276 3.343 -13.303 13.904 Atomic orbital electron populations 1.21300 0.96059 0.98475 1.00601 1.21305 0.96285 0.97697 0.98344 1.18922 0.90834 0.92357 0.86667 1.02057 1.21420 1.31497 1.11988 0.91451 0.92727 1.25619 0.95324 0.95707 1.01499 1.70008 1.38412 1.24291 1.22913 0.85670 0.78875 0.78729 0.78715 1.19774 1.21055 1.19760 1.60534 1.47801 1.16201 1.06448 1.22596 0.93443 1.00466 0.92897 1.21689 0.99454 0.80273 0.91412 0.88919 1.86567 1.36538 1.19814 1.94573 1.23258 0.97015 1.00595 0.95465 1.22989 0.97385 1.00023 0.97602 1.22774 0.96144 1.02455 0.95548 1.22858 0.97089 1.01090 0.95617 0.95126 0.94576 0.92830 0.92520 0.96069 0.93010 0.84942 0.96554 0.91853 0.77396 0.88483 0.89674 0.91508 0.89557 0.90742 0.91096 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.85 9.46 71.98 0.68 -4.17 16 2 C -0.10 -4.83 5.58 30.60 0.17 -4.66 16 3 C 0.22 11.26 2.30 44.17 0.10 11.36 16 4 H -0.04 -2.17 7.84 -2.38 -0.02 -2.19 16 5 C -0.53 -28.76 7.33 25.60 0.19 -28.57 16 6 H 0.05 2.97 7.60 -2.91 -0.02 2.95 16 7 C 0.02 0.98 5.30 84.66 0.45 1.43 16 8 N -0.92 -52.91 11.34 21.45 0.24 -52.67 16 9 Si 0.95 43.76 29.54 68.60 2.03 45.79 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 13 N -0.68 -28.92 5.51 -495.44 -2.73 -31.65 16 14 C 0.04 1.26 5.10 86.31 0.44 1.70 16 15 C 0.13 3.68 3.27 30.60 0.10 3.79 16 16 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 17 O -0.57 -16.00 12.19 -148.98 -1.82 -17.82 16 18 C -0.14 -3.18 3.58 -10.27 -0.04 -3.21 16 19 C -0.14 -2.74 7.42 31.18 0.23 -2.51 16 20 C -0.13 -2.18 8.09 31.18 0.25 -1.92 16 21 C -0.13 -2.48 7.54 31.12 0.23 -2.24 16 22 H 0.03 1.48 7.37 -2.39 -0.02 1.47 16 23 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 24 H 0.05 2.33 7.50 -2.39 -0.02 2.31 16 25 H 0.06 3.13 6.13 -2.39 -0.01 3.12 16 26 H 0.02 0.96 7.43 -2.39 -0.02 0.94 16 27 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 28 H 0.33 14.39 7.89 -89.69 -0.71 13.68 16 29 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.06 2.27 7.39 -2.39 -0.02 2.26 16 31 H 0.38 8.64 6.82 -74.05 -0.51 8.14 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.08 1.56 5.92 -2.39 -0.01 1.55 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.24 8.14 -2.38 -0.02 1.23 16 38 H 0.08 1.68 7.72 -2.39 -0.02 1.66 16 Total: -1.00 -59.66 297.90 0.36 -59.30 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -0.18 Total: 26.06 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 2.81 Total: -29.01 kcal Atomic # 7 Polarization: -81.83 SS G_CDS: -2.49 Total: -84.32 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -1.82 Total: -17.82 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -59.66 0.36 -59.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315723667.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.354 kcal (2) G-P(sol) polarization free energy of solvation -59.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds