Wall clock time and date at job start Mon Mar 30 2020 03:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47321 * 2 1 4 4 H 1.09000 * 109.47426 * 184.43946 * 3 2 1 5 5 C 1.50694 * 109.47320 * 304.44202 * 3 2 1 6 6 H 1.08007 * 120.00173 * 115.14910 * 5 3 2 7 7 C 1.37877 * 120.00151 * 295.15227 * 5 3 2 8 8 N 1.31509 * 119.99720 * 352.97887 * 7 5 3 9 9 Si 1.86798 * 120.00176 * 172.98193 * 7 5 3 10 10 H 1.48507 * 109.47041 * 270.00103 * 9 7 5 11 11 H 1.48494 * 109.47167 * 29.99609 * 9 7 5 12 12 H 1.48499 * 109.47342 * 150.00095 * 9 7 5 13 13 N 1.46905 * 109.46902 * 64.44525 * 3 2 1 14 14 C 1.46896 * 111.00309 * 85.27138 * 13 3 2 15 15 C 1.52995 * 109.47053 * 185.36430 * 14 13 3 16 16 H 1.09003 * 109.47544 * 60.00343 * 15 14 13 17 17 O 1.42900 * 109.47361 * 300.00158 * 15 14 13 18 18 C 1.53007 * 109.47202 * 179.97438 * 15 14 13 19 19 C 1.53779 * 113.61307 * 277.49930 * 18 15 14 20 20 C 1.53779 * 87.08253 * 220.01496 * 19 18 15 21 21 C 1.53775 * 113.61658 * 180.02562 * 18 15 14 22 22 H 1.08997 * 109.47320 * 185.53339 * 1 2 3 23 23 H 1.09000 * 109.47072 * 305.54061 * 1 2 3 24 24 H 1.09002 * 109.46683 * 65.53543 * 1 2 3 25 25 H 1.08997 * 109.47133 * 239.99713 * 2 1 3 26 26 H 1.09007 * 109.46519 * 120.00403 * 2 1 3 27 27 H 0.97001 * 120.00604 * 356.29687 * 8 7 5 28 28 H 1.00901 * 110.99604 * 209.22782 * 13 3 2 29 29 H 1.08999 * 109.47177 * 305.37078 * 14 13 3 30 30 H 1.09002 * 109.46818 * 65.36766 * 14 13 3 31 31 H 0.96698 * 113.99814 * 299.99962 * 17 15 14 32 32 H 1.08999 * 112.84702 * 48.80626 * 18 15 14 33 33 H 1.08994 * 113.61508 * 334.56630 * 19 18 15 34 34 H 1.09008 * 113.61082 * 105.46971 * 19 18 15 35 35 H 1.09004 * 113.61685 * 270.88760 * 20 19 18 36 36 H 1.09001 * 113.69114 * 139.99197 * 20 19 18 37 37 H 1.08998 * 113.61461 * 254.53282 * 21 18 15 38 38 H 1.09004 * 113.61307 * 25.43307 * 21 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1272 1.4435 -0.0795 5 6 1.4500 2.1839 -1.1717 6 1 0.7758 3.0108 -1.0035 7 6 1.7706 1.8068 -2.4585 8 7 2.6945 0.8940 -2.6653 9 14 0.8929 2.5925 -3.9083 10 1 -0.3175 1.7998 -4.2428 11 1 0.4946 3.9784 -3.5538 12 1 1.8038 2.6237 -5.0807 13 7 1.6400 2.1032 1.2496 14 6 2.6082 1.8339 2.3209 15 6 2.0921 2.4238 3.6349 16 1 1.1349 1.9672 3.8870 17 8 1.9229 3.8353 3.4894 18 6 3.1002 2.1428 4.7510 19 6 2.9643 0.7394 5.3648 20 6 3.2241 1.3973 6.7303 21 6 2.6735 2.6968 6.1205 22 1 -0.3634 -1.0228 0.0991 23 1 -0.3633 0.5974 0.8362 24 1 -0.3633 0.4256 -0.9354 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.1880 0.5250 -1.9161 28 1 1.5201 3.0955 1.1115 29 1 2.7373 0.7573 2.4318 30 1 3.5653 2.2906 2.0689 31 1 2.7360 4.3078 3.2645 32 1 4.1219 2.4025 4.4737 33 1 1.9650 0.3152 5.2676 34 1 3.7500 0.0498 5.0559 35 1 4.2802 1.4520 6.9948 36 1 2.6066 0.9965 7.5341 37 1 3.2240 3.5879 6.4219 38 1 1.5946 2.8075 6.2298 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315723670.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:38 Heat of formation + Delta-G solvation = -72.421886 kcal Electronic energy + Delta-G solvation = -16381.420037 eV Core-core repulsion = 13836.710382 eV Total energy + Delta-G solvation = -2544.709655 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.41228 -38.39915 -37.03049 -34.46098 -32.65203 -30.18273 -27.58303 -26.47135 -25.59711 -24.82841 -22.56983 -21.27218 -20.40252 -19.01515 -17.65880 -16.94640 -16.29908 -16.14458 -15.71483 -15.60532 -15.19016 -14.95558 -14.21704 -13.82559 -13.57691 -13.33381 -13.29081 -13.04519 -12.72156 -12.62576 -12.26298 -12.03607 -11.97593 -11.94535 -11.71531 -11.59910 -11.36619 -11.12792 -10.65037 -10.56233 -10.31044 -9.11536 -8.57614 -6.28375 1.54373 1.61610 1.79097 2.57450 3.18994 3.23113 3.51518 3.73371 3.90729 3.91048 4.03574 4.19144 4.27174 4.38406 4.47722 4.56123 4.70706 4.74095 4.76859 4.85922 4.87717 5.01750 5.06363 5.09754 5.13697 5.20534 5.36922 5.38677 5.52273 5.59863 5.68183 5.90462 6.09916 6.49446 6.62067 6.79382 6.87234 7.50108 8.79179 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.045243 B = 0.005793 C = 0.005520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.736552 B = 4831.958721 C = 5070.914355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.207 3.793 4 H -0.043 1.043 5 C -0.597 4.597 6 H 0.047 0.953 7 C -0.023 4.023 8 N -0.935 5.935 9 Si 1.111 2.889 10 H -0.276 1.276 11 H -0.273 1.273 12 H -0.287 1.287 13 N -0.673 5.673 14 C 0.033 3.967 15 C 0.134 3.866 16 H 0.090 0.910 17 O -0.569 6.569 18 C -0.144 4.144 19 C -0.137 4.137 20 C -0.135 4.135 21 C -0.122 4.122 22 H 0.042 0.958 23 H 0.055 0.945 24 H 0.034 0.966 25 H 0.031 0.969 26 H 0.035 0.965 27 H 0.257 0.743 28 H 0.335 0.665 29 H 0.065 0.935 30 H 0.014 0.986 31 H 0.380 0.620 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.828 1.853 15.728 15.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.139 4.139 3 C 0.097 3.903 4 H -0.026 1.026 5 C -0.635 4.635 6 H 0.065 0.935 7 C -0.222 4.222 8 N -0.572 5.572 9 Si 0.934 3.066 10 H -0.202 1.202 11 H -0.198 1.198 12 H -0.213 1.213 13 N -0.303 5.303 14 C -0.097 4.097 15 C 0.075 3.925 16 H 0.108 0.892 17 O -0.375 6.375 18 C -0.163 4.163 19 C -0.174 4.174 20 C -0.172 4.172 21 C -0.159 4.159 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.153 0.847 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.228 0.772 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.335 1.165 14.427 14.478 hybrid contribution 1.768 0.445 0.902 2.034 sum 1.433 1.609 15.329 15.480 Atomic orbital electron populations 1.21304 0.95137 0.99009 1.01101 1.21372 0.97456 0.97389 0.97650 1.19084 0.90785 0.92616 0.87765 1.02560 1.22239 1.30317 1.18091 0.92878 0.93452 1.27004 0.96327 0.95792 1.03083 1.70876 1.22676 1.28675 1.35009 0.82998 0.75199 0.75724 0.72678 1.20169 1.19759 1.21258 1.60417 1.47215 1.16075 1.06623 1.22654 0.93042 1.00739 0.93272 1.21858 0.98579 0.80750 0.91300 0.89170 1.86551 1.38683 1.19324 1.92946 1.23257 0.99467 0.98677 0.94919 1.22897 1.02223 0.95428 0.96867 1.22811 1.01831 0.96176 0.96376 1.22748 1.01113 0.97813 0.94273 0.93927 0.92569 0.94712 0.95055 0.94665 0.93234 0.84691 0.91620 0.96749 0.77174 0.88923 0.90214 0.91396 0.89384 0.90615 0.91006 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.43 71.98 0.68 -4.12 16 2 C -0.10 -4.80 5.51 30.59 0.17 -4.63 16 3 C 0.21 10.44 1.93 44.16 0.09 10.53 16 4 H -0.04 -2.41 7.22 -2.39 -0.02 -2.43 16 5 C -0.60 -33.00 7.13 25.60 0.18 -32.82 16 6 H 0.05 2.64 7.67 -2.91 -0.02 2.61 16 7 C -0.02 -1.31 5.26 84.66 0.45 -0.86 16 8 N -0.93 -56.41 12.94 21.45 0.28 -56.14 16 9 Si 1.11 50.38 29.91 68.60 2.05 52.44 16 10 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 13 N -0.67 -28.58 5.61 -495.48 -2.78 -31.36 16 14 C 0.03 1.14 5.15 86.30 0.44 1.59 16 15 C 0.13 3.75 3.01 30.59 0.09 3.84 16 16 H 0.09 2.73 7.94 -2.39 -0.02 2.71 16 17 O -0.57 -16.19 12.57 -148.98 -1.87 -18.06 16 18 C -0.14 -3.13 3.33 -10.27 -0.03 -3.16 16 19 C -0.14 -2.73 7.63 31.12 0.24 -2.49 16 20 C -0.13 -2.21 8.08 31.11 0.25 -1.96 16 21 C -0.12 -2.30 7.44 31.11 0.23 -2.07 16 22 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.06 2.41 7.59 -2.39 -0.02 2.39 16 24 H 0.03 1.66 7.31 -2.39 -0.02 1.65 16 25 H 0.03 1.65 6.35 -2.39 -0.02 1.64 16 26 H 0.03 1.54 7.32 -2.38 -0.02 1.52 16 27 H 0.26 15.78 6.03 -92.71 -0.56 15.22 16 28 H 0.34 14.63 7.78 -89.69 -0.70 13.93 16 29 H 0.07 2.32 7.29 -2.39 -0.02 2.30 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.38 8.53 9.05 -74.06 -0.67 7.86 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.08 1.65 7.96 -2.39 -0.02 1.64 16 34 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 35 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.55 8.10 -2.38 -0.02 1.53 16 Total: -1.00 -62.46 300.85 0.34 -62.12 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: -0.12 Total: 27.16 kcal Atomic # 6 Polarization: -38.94 SS G_CDS: 2.78 Total: -36.16 kcal Atomic # 7 Polarization: -85.00 SS G_CDS: -2.50 Total: -87.50 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -1.87 Total: -18.06 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.44 kcal Total: -62.46 0.34 -62.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315723670.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.299 kcal (2) G-P(sol) polarization free energy of solvation -62.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds