Wall clock time and date at job start Mon Mar 30 2020 03:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47291 * 2 1 4 4 H 1.09001 * 109.46301 * 55.01969 * 3 2 1 5 5 C 1.50701 * 109.47251 * 175.02049 * 3 2 1 6 6 H 1.07999 * 120.00001 * 120.00064 * 5 3 2 7 7 C 1.37875 * 119.99981 * 300.00035 * 5 3 2 8 8 N 1.31515 * 120.00174 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00210 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47605 * 89.99681 * 9 7 5 11 11 H 1.48500 * 109.47453 * 209.99690 * 9 7 5 12 12 H 1.48500 * 109.46920 * 329.99650 * 9 7 5 13 13 N 1.46898 * 109.47235 * 295.02174 * 3 2 1 14 14 C 1.46901 * 110.99884 * 137.84927 * 13 3 2 15 15 C 1.53006 * 110.56181 * 179.52548 * 14 13 3 16 16 C 1.52997 * 109.47288 * 308.17149 * 15 14 13 17 17 C 1.54509 * 110.51154 * 302.20465 * 14 13 3 18 18 C 1.54480 * 104.18235 * 118.71603 * 17 14 13 19 19 O 1.44422 * 104.80581 * 23.90472 * 18 17 14 20 20 C 1.44423 * 105.27825 * 319.49186 * 19 18 17 21 21 H 1.08998 * 109.46967 * 304.87283 * 1 2 3 22 22 H 1.08993 * 109.47437 * 64.88169 * 1 2 3 23 23 H 1.09003 * 109.46783 * 184.88089 * 1 2 3 24 24 H 1.09008 * 109.47159 * 240.00169 * 2 1 3 25 25 H 1.08998 * 109.47722 * 120.00710 * 2 1 3 26 26 H 0.96995 * 119.99870 * 179.97438 * 8 7 5 27 27 H 1.00902 * 110.99692 * 13.90054 * 13 3 2 28 28 H 1.08996 * 109.47122 * 68.17763 * 15 14 13 29 29 H 1.09001 * 109.46898 * 188.17275 * 15 14 13 30 30 H 1.09001 * 109.46790 * 64.52931 * 16 15 14 31 31 H 1.08992 * 109.47102 * 184.53144 * 16 15 14 32 32 H 1.09000 * 109.47192 * 304.52897 * 16 15 14 33 33 H 1.08990 * 110.51239 * 0.02562 * 17 14 13 34 34 H 1.08999 * 110.50951 * 237.42359 * 17 14 13 35 35 H 1.08996 * 110.37672 * 142.73902 * 18 17 14 36 36 H 1.09002 * 110.37076 * 264.96498 * 18 17 14 37 37 H 1.08998 * 110.37489 * 159.33980 * 20 19 18 38 38 H 1.08996 * 110.37427 * 281.68370 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9813 0.8421 5 6 3.5420 1.4443 0.1233 6 1 4.1470 1.8890 -0.6529 7 6 4.1437 0.8783 1.2272 8 7 5.4545 0.8793 1.3346 9 14 3.0973 0.1085 2.5695 10 1 2.8763 -1.3276 2.2627 11 1 3.7950 0.2342 3.8744 12 1 1.7887 0.8070 2.6387 13 7 1.6510 2.0995 -1.2550 14 6 1.1800 3.4689 -1.0083 15 6 0.7887 4.1476 -2.3226 16 6 1.9381 4.0201 -3.3244 17 6 -0.0127 3.4626 -0.0262 18 6 0.4886 4.2823 1.1834 19 8 1.5307 5.1279 0.6497 20 6 2.2644 4.2921 -0.2716 21 1 -0.3633 0.5876 0.8431 22 1 -0.3634 0.4362 -0.9304 23 1 -0.3633 -1.0240 0.0874 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 5.8777 0.4815 2.1113 27 1 0.9529 1.5597 -1.7444 28 1 -0.1018 3.6676 -2.7283 29 1 0.5817 5.2019 -2.1395 30 1 2.0920 2.9690 -3.5688 31 1 1.6922 4.5719 -4.2316 32 1 2.8488 4.4284 -2.8863 33 1 -0.2527 2.4434 0.2767 34 1 -0.8819 3.9408 -0.4778 35 1 -0.3198 4.8885 1.5923 36 1 0.8905 3.6201 1.9503 37 1 2.8202 4.9058 -0.9805 38 1 2.9404 3.6315 0.2711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378855490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:27 Heat of formation + Delta-G solvation = -45.455858 kcal Electronic energy + Delta-G solvation = -17587.681206 eV Core-core repulsion = 15044.140886 eV Total energy + Delta-G solvation = -2543.540321 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.74405 -36.15197 -34.03954 -32.07364 -30.59133 -29.73918 -27.28096 -26.63854 -23.56828 -22.60359 -21.66950 -20.12108 -18.76744 -16.89840 -15.94747 -15.71065 -14.77968 -14.71420 -14.23066 -13.72846 -13.66057 -13.04623 -12.93983 -12.77341 -12.22416 -12.12535 -11.80552 -11.35576 -11.16767 -11.13036 -10.99956 -10.91173 -10.62713 -10.34467 -10.19223 -9.99382 -9.93362 -9.45985 -9.27732 -8.93388 -8.53759 -7.38598 -6.06335 -4.02053 3.22188 3.31817 3.35712 4.37550 4.49631 4.86362 5.08483 5.14960 5.25968 5.40010 5.54913 5.58747 5.64250 5.73639 5.75833 5.88945 5.94584 6.05995 6.09384 6.20062 6.25376 6.29658 6.39573 6.44891 6.54246 6.61323 6.69986 6.73889 6.82746 6.93069 7.08847 7.34960 7.72278 7.94580 8.25720 8.72177 9.07737 9.56732 11.06663 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025015 B = 0.011297 C = 0.010942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.042474 B = 2478.023436 C = 2558.313595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.144 4.144 3 C 0.182 3.818 4 H 0.017 0.983 5 C -0.492 4.492 6 H 0.084 0.916 7 C 0.067 3.933 8 N -0.897 5.897 9 Si 0.878 3.122 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.269 1.269 13 N -0.655 5.655 14 C 0.093 3.907 15 C -0.102 4.102 16 C -0.140 4.140 17 C -0.193 4.193 18 C 0.049 3.951 19 O -0.385 6.385 20 C 0.041 3.959 21 H 0.046 0.954 22 H 0.049 0.951 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.263 0.737 27 H 0.324 0.676 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.056 0.944 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.301 3.286 -3.795 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.182 4.182 3 C 0.074 3.926 4 H 0.035 0.965 5 C -0.531 4.531 6 H 0.102 0.898 7 C -0.134 4.134 8 N -0.536 5.536 9 Si 0.709 3.291 10 H -0.207 1.207 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.285 5.285 14 C 0.001 3.999 15 C -0.140 4.140 16 C -0.197 4.197 17 C -0.233 4.233 18 C -0.028 4.028 19 O -0.304 6.304 20 C -0.036 4.036 21 H 0.065 0.935 22 H 0.068 0.932 23 H 0.065 0.935 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.143 0.857 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.441 3.653 -3.789 11.693 hybrid contribution -1.485 -1.035 1.244 2.196 sum -11.926 2.618 -2.545 12.472 Atomic orbital electron populations 1.21978 0.98298 1.00602 1.00651 1.22300 0.92901 1.01073 1.01951 1.19783 0.96911 0.88708 0.87232 0.96510 1.21053 0.89000 1.36918 1.06109 0.89824 1.24970 0.94687 0.95970 0.97778 1.69876 1.08510 1.45537 1.29662 0.87006 0.80671 0.79791 0.81609 1.20694 1.22475 1.19422 1.60620 1.43033 1.00596 1.24290 1.22308 0.92128 0.91751 0.93742 1.21499 0.98293 0.99615 0.94603 1.21627 0.98255 1.02669 0.97164 1.23873 0.99832 1.01602 0.97945 1.23251 0.90537 0.93211 0.95795 1.89019 1.45567 1.35366 1.60414 1.24016 0.94202 0.93414 0.91921 0.93478 0.93176 0.93549 0.91405 0.92737 0.92704 0.85748 0.92822 0.92048 0.91390 0.94282 0.92519 0.90118 0.91506 0.90344 0.92470 0.89771 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 8.66 37.16 0.32 -2.24 16 2 C -0.14 -2.93 4.88 -26.73 -0.13 -3.06 16 3 C 0.18 3.98 0.57 -68.86 -0.04 3.94 16 4 H 0.02 0.40 3.90 -51.93 -0.20 0.19 16 5 C -0.49 -13.17 7.46 -34.44 -0.26 -13.43 16 6 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 7 C 0.07 1.89 5.45 -17.82 -0.10 1.79 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 9 Si 0.88 21.46 24.41 -169.99 -4.15 17.31 16 10 H -0.28 -6.69 6.83 56.52 0.39 -6.30 16 11 H -0.30 -7.39 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.26 6.53 56.52 0.37 -5.89 16 13 N -0.65 -12.35 5.09 -92.50 -0.47 -12.82 16 14 C 0.09 1.61 0.72 -129.86 -0.09 1.52 16 15 C -0.10 -1.49 4.93 -26.73 -0.13 -1.62 16 16 C -0.14 -2.04 9.50 37.16 0.35 -1.68 16 17 C -0.19 -3.08 5.68 -25.16 -0.14 -3.22 16 18 C 0.05 0.84 7.25 37.93 0.28 1.12 16 19 O -0.39 -7.51 11.65 -35.23 -0.41 -7.92 16 20 C 0.04 0.80 6.36 38.11 0.24 1.05 16 21 H 0.05 0.76 7.00 -51.93 -0.36 0.40 16 22 H 0.05 0.72 6.76 -51.93 -0.35 0.37 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 25 H 0.05 1.21 3.21 -51.93 -0.17 1.04 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.32 5.52 6.65 -39.29 -0.26 5.26 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.07 1.05 7.63 -51.93 -0.40 0.65 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.89 6.69 -51.93 -0.35 0.54 16 33 H 0.08 1.31 4.52 -51.93 -0.23 1.07 16 34 H 0.07 0.93 7.73 -51.93 -0.40 0.53 16 35 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.06 7.41 -51.93 -0.38 0.67 16 37 H 0.08 1.58 6.52 -51.93 -0.34 1.24 16 38 H 0.11 2.56 5.03 -51.93 -0.26 2.30 16 LS Contribution 275.30 15.07 4.15 4.15 Total: -1.00 -28.64 275.30 -5.66 -34.30 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.85 Total: 6.99 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 0.30 Total: -15.84 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.30 Total: -39.00 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: -0.41 Total: -7.92 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.15 Total: 17.31 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -28.64 -5.66 -34.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.155 kcal (2) G-P(sol) polarization free energy of solvation -28.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds