Wall clock time and date at job start Mon Mar 30 2020 03:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47291 * 2 1 4 4 H 1.09001 * 109.46301 * 55.01969 * 3 2 1 5 5 C 1.50701 * 109.47251 * 175.02049 * 3 2 1 6 6 H 1.07999 * 120.00001 * 120.00064 * 5 3 2 7 7 C 1.37875 * 119.99981 * 300.00035 * 5 3 2 8 8 N 1.31515 * 120.00174 * 179.97438 * 7 5 3 9 9 Si 1.86798 * 120.00210 * 0.02562 * 7 5 3 10 10 H 1.48504 * 109.47605 * 89.99681 * 9 7 5 11 11 H 1.48500 * 109.47453 * 209.99690 * 9 7 5 12 12 H 1.48500 * 109.46920 * 329.99650 * 9 7 5 13 13 N 1.46898 * 109.47235 * 295.02174 * 3 2 1 14 14 C 1.46901 * 110.99884 * 137.84927 * 13 3 2 15 15 C 1.53006 * 110.56181 * 179.52548 * 14 13 3 16 16 C 1.52997 * 109.47288 * 308.17149 * 15 14 13 17 17 C 1.54509 * 110.51154 * 302.20465 * 14 13 3 18 18 C 1.54480 * 104.18235 * 118.71603 * 17 14 13 19 19 O 1.44422 * 104.80581 * 23.90472 * 18 17 14 20 20 C 1.44423 * 105.27825 * 319.49186 * 19 18 17 21 21 H 1.08998 * 109.46967 * 304.87283 * 1 2 3 22 22 H 1.08993 * 109.47437 * 64.88169 * 1 2 3 23 23 H 1.09003 * 109.46783 * 184.88089 * 1 2 3 24 24 H 1.09008 * 109.47159 * 240.00169 * 2 1 3 25 25 H 1.08998 * 109.47722 * 120.00710 * 2 1 3 26 26 H 0.96995 * 119.99870 * 179.97438 * 8 7 5 27 27 H 1.00902 * 110.99692 * 13.90054 * 13 3 2 28 28 H 1.08996 * 109.47122 * 68.17763 * 15 14 13 29 29 H 1.09001 * 109.46898 * 188.17275 * 15 14 13 30 30 H 1.09001 * 109.46790 * 64.52931 * 16 15 14 31 31 H 1.08992 * 109.47102 * 184.53144 * 16 15 14 32 32 H 1.09000 * 109.47192 * 304.52897 * 16 15 14 33 33 H 1.08990 * 110.51239 * 0.02562 * 17 14 13 34 34 H 1.08999 * 110.50951 * 237.42359 * 17 14 13 35 35 H 1.08996 * 110.37672 * 142.73902 * 18 17 14 36 36 H 1.09002 * 110.37076 * 264.96498 * 18 17 14 37 37 H 1.08998 * 110.37489 * 159.33980 * 20 19 18 38 38 H 1.08996 * 110.37427 * 281.68370 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9813 0.8421 5 6 3.5420 1.4443 0.1233 6 1 4.1470 1.8890 -0.6529 7 6 4.1437 0.8783 1.2272 8 7 5.4545 0.8793 1.3346 9 14 3.0973 0.1085 2.5695 10 1 2.8763 -1.3276 2.2627 11 1 3.7950 0.2342 3.8744 12 1 1.7887 0.8070 2.6387 13 7 1.6510 2.0995 -1.2550 14 6 1.1800 3.4689 -1.0083 15 6 0.7887 4.1476 -2.3226 16 6 1.9381 4.0201 -3.3244 17 6 -0.0127 3.4626 -0.0262 18 6 0.4886 4.2823 1.1834 19 8 1.5307 5.1279 0.6497 20 6 2.2644 4.2921 -0.2716 21 1 -0.3633 0.5876 0.8431 22 1 -0.3634 0.4362 -0.9304 23 1 -0.3633 -1.0240 0.0874 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 5.8777 0.4815 2.1113 27 1 0.9529 1.5597 -1.7444 28 1 -0.1018 3.6676 -2.7283 29 1 0.5817 5.2019 -2.1395 30 1 2.0920 2.9690 -3.5688 31 1 1.6922 4.5719 -4.2316 32 1 2.8488 4.4284 -2.8863 33 1 -0.2527 2.4434 0.2767 34 1 -0.8819 3.9408 -0.4778 35 1 -0.3198 4.8885 1.5923 36 1 0.8905 3.6201 1.9503 37 1 2.8202 4.9058 -0.9805 38 1 2.9404 3.6315 0.2711 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378855490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:27 Heat of formation + Delta-G solvation = -66.436060 kcal Electronic energy + Delta-G solvation = -17588.590976 eV Core-core repulsion = 15044.140886 eV Total energy + Delta-G solvation = -2544.450090 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.20198 -37.75603 -35.51106 -34.07265 -31.91425 -31.16317 -28.96827 -28.25374 -24.96465 -24.29141 -22.96826 -21.75663 -20.24839 -18.85871 -17.52051 -17.16626 -16.57314 -16.28694 -15.73810 -15.28874 -14.98575 -14.71220 -14.34409 -14.28604 -13.77211 -13.58476 -13.31500 -12.85087 -12.67004 -12.60328 -12.42912 -12.36994 -12.21612 -12.02140 -11.57501 -11.49615 -11.37778 -11.19995 -11.12378 -10.65277 -10.49880 -8.94475 -8.23760 -6.21850 1.26385 1.31802 1.40760 2.31824 3.05829 3.08534 3.48057 3.77556 3.86143 4.03074 4.23891 4.28652 4.31673 4.33655 4.44669 4.54799 4.67141 4.72456 4.79779 4.88576 4.92690 4.98066 5.05446 5.12593 5.15026 5.16776 5.20561 5.31664 5.42452 5.48830 5.64481 5.76274 5.83481 6.14441 6.63509 6.85161 6.97224 7.40583 8.93433 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025015 B = 0.011297 C = 0.010942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.042474 B = 2478.023436 C = 2558.313595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.192 3.808 4 H 0.013 0.987 5 C -0.482 4.482 6 H 0.036 0.964 7 C 0.006 3.994 8 N -0.952 5.952 9 Si 0.940 3.060 10 H -0.267 1.267 11 H -0.306 1.306 12 H -0.248 1.248 13 N -0.661 5.661 14 C 0.094 3.906 15 C -0.095 4.095 16 C -0.138 4.138 17 C -0.185 4.185 18 C 0.040 3.960 19 O -0.397 6.397 20 C 0.040 3.960 21 H 0.049 0.951 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.036 0.964 26 H 0.261 0.739 27 H 0.340 0.660 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.036 0.964 37 H 0.084 0.916 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.116 3.235 -4.365 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.082 3.918 4 H 0.031 0.969 5 C -0.521 4.521 6 H 0.054 0.946 7 C -0.190 4.190 8 N -0.593 5.593 9 Si 0.768 3.232 10 H -0.194 1.194 11 H -0.234 1.234 12 H -0.172 1.172 13 N -0.294 5.294 14 C 0.002 3.998 15 C -0.133 4.133 16 C -0.195 4.195 17 C -0.224 4.224 18 C -0.037 4.037 19 O -0.316 6.316 20 C -0.037 4.037 21 H 0.068 0.932 22 H 0.091 0.909 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.161 0.839 28 H 0.099 0.901 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.299 3.602 -4.383 15.383 hybrid contribution -0.230 -0.916 1.338 1.638 sum -14.528 2.686 -3.044 15.085 Atomic orbital electron populations 1.21902 0.94378 1.02389 1.02018 1.22190 0.96392 0.98893 1.00906 1.19485 0.93400 0.90385 0.88491 0.96926 1.21321 0.91771 1.34724 1.04265 0.94591 1.25760 0.95661 0.97098 1.00469 1.70047 1.10640 1.47937 1.30720 0.85998 0.79642 0.79617 0.77966 1.19382 1.23438 1.17210 1.60378 1.44452 1.01546 1.23028 1.22352 0.91660 0.90277 0.95539 1.21483 0.98988 1.00071 0.92745 1.21596 0.97581 1.02091 0.98269 1.23841 0.99965 1.01868 0.96770 1.23474 0.90617 0.93576 0.95996 1.89006 1.46265 1.35790 1.60549 1.23819 0.94823 0.93264 0.91788 0.93156 0.90937 0.91446 0.91790 0.94557 0.92972 0.83935 0.90089 0.91105 0.92582 0.91740 0.94759 0.89922 0.88231 0.86986 0.94591 0.89746 0.91981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 8.66 71.98 0.62 -3.57 16 2 C -0.15 -5.61 4.88 30.59 0.15 -5.46 16 3 C 0.19 8.26 0.57 44.17 0.03 8.29 16 4 H 0.01 0.59 3.90 -2.39 -0.01 0.58 16 5 C -0.48 -26.80 7.46 25.60 0.19 -26.61 16 6 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 7 C 0.01 0.36 5.45 84.65 0.46 0.82 16 8 N -0.95 -60.11 13.96 21.45 0.30 -59.82 16 9 Si 0.94 44.94 24.41 68.60 1.67 46.61 16 10 H -0.27 -12.17 6.83 99.48 0.68 -11.49 16 11 H -0.31 -14.95 7.11 99.48 0.71 -14.24 16 12 H -0.25 -10.87 6.53 99.48 0.65 -10.22 16 13 N -0.66 -24.07 5.09 -446.56 -2.27 -26.34 16 14 C 0.09 3.04 0.72 4.66 0.00 3.05 16 15 C -0.10 -2.45 4.93 30.60 0.15 -2.30 16 16 C -0.14 -3.77 9.50 71.98 0.68 -3.09 16 17 C -0.19 -5.21 5.68 31.61 0.18 -5.03 16 18 C 0.04 1.27 7.25 72.49 0.53 1.80 16 19 O -0.40 -15.16 11.65 -148.98 -1.74 -16.90 16 20 C 0.04 1.59 6.36 72.60 0.46 2.05 16 21 H 0.05 1.39 7.00 -2.39 -0.02 1.38 16 22 H 0.07 1.71 6.76 -2.39 -0.02 1.69 16 23 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 25 H 0.04 1.53 3.21 -2.39 -0.01 1.53 16 26 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 27 H 0.34 10.54 6.65 -89.69 -0.60 9.94 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 29 H 0.07 1.74 8.13 -2.39 -0.02 1.72 16 30 H 0.06 1.65 7.63 -2.39 -0.02 1.63 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.03 1.07 6.69 -2.39 -0.02 1.05 16 33 H 0.08 2.32 4.52 -2.39 -0.01 2.31 16 34 H 0.10 2.20 7.73 -2.39 -0.02 2.18 16 35 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 36 H 0.04 1.28 7.41 -2.39 -0.02 1.27 16 37 H 0.08 3.27 6.52 -2.39 -0.02 3.26 16 38 H 0.06 3.07 5.03 -2.39 -0.01 3.06 16 Total: -1.00 -65.59 275.30 1.79 -63.80 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.37 Total: 22.70 kcal Atomic # 6 Polarization: -33.51 SS G_CDS: 3.46 Total: -30.06 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -1.97 Total: -86.15 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -1.74 Total: -16.90 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.67 Total: 46.61 kcal Total: -65.59 1.79 -63.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.641 kcal (2) G-P(sol) polarization free energy of solvation -65.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds