Wall clock time and date at job start Mon Mar 30 2020 03:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46718 * 2 1 4 4 H 1.08997 * 109.47108 * 58.28776 * 3 2 1 5 5 C 1.50702 * 109.46787 * 178.28362 * 3 2 1 6 6 H 1.07996 * 119.99854 * 120.00295 * 5 3 2 7 7 C 1.37881 * 120.00019 * 300.00079 * 5 3 2 8 8 N 1.31507 * 119.99967 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99670 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47189 * 90.00122 * 9 7 5 11 11 H 1.48507 * 109.47013 * 210.00205 * 9 7 5 12 12 H 1.48500 * 109.47733 * 330.00154 * 9 7 5 13 13 N 1.46895 * 109.47475 * 298.28357 * 3 2 1 14 14 C 1.46902 * 111.00179 * 135.14168 * 13 3 2 15 15 C 1.53002 * 110.53773 * 61.31510 * 14 13 3 16 16 C 1.52995 * 109.47281 * 63.62938 * 15 14 13 17 17 C 1.54812 * 110.48582 * 298.70109 * 14 13 3 18 18 C 1.54997 * 102.09264 * 262.20054 * 17 14 13 19 19 O 1.44385 * 103.48861 * 322.97576 * 18 17 14 20 20 C 1.43752 * 106.97242 * 40.06456 * 19 18 17 21 21 H 1.08995 * 109.47372 * 297.10183 * 1 2 3 22 22 H 1.09003 * 109.47174 * 57.10472 * 1 2 3 23 23 H 1.09002 * 109.46821 * 177.10447 * 1 2 3 24 24 H 1.09000 * 109.47051 * 240.00833 * 2 1 3 25 25 H 1.08994 * 109.47498 * 120.00297 * 2 1 3 26 26 H 0.96998 * 120.00223 * 180.02562 * 8 7 5 27 27 H 1.00896 * 111.00164 * 259.09592 * 13 3 2 28 28 H 1.09001 * 109.46630 * 183.63059 * 15 14 13 29 29 H 1.09003 * 109.47163 * 303.62289 * 15 14 13 30 30 H 1.08998 * 109.46943 * 65.89662 * 16 15 14 31 31 H 1.09001 * 109.47216 * 185.90135 * 16 15 14 32 32 H 1.09004 * 109.46819 * 305.89738 * 16 15 14 33 33 H 1.08995 * 110.91121 * 20.39896 * 17 14 13 34 34 H 1.09004 * 110.90648 * 143.96897 * 17 14 13 35 35 H 1.09004 * 110.62274 * 204.47857 * 18 17 14 36 36 H 1.08995 * 110.61908 * 81.47439 * 18 17 14 37 37 H 1.08992 * 109.88059 * 92.91089 * 20 19 18 38 38 H 1.08996 * 109.87470 * 214.05743 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6517 1.9651 0.8742 5 6 3.5464 1.4428 0.0426 6 1 4.1090 1.9025 -0.7565 7 6 4.2062 0.8562 1.1016 8 7 3.5210 0.2961 2.0743 9 14 6.0734 0.8572 1.1546 10 1 6.5481 2.0767 1.8566 11 1 6.5486 -0.3483 1.8802 12 1 6.6081 0.8438 -0.2307 13 7 1.5845 2.1230 -1.2196 14 6 1.0683 3.4637 -0.9129 15 6 2.1657 4.3333 -0.2960 16 6 3.2882 4.5373 -1.3154 17 6 -0.1489 3.3710 0.0392 18 6 -1.3407 3.4732 -0.9465 19 8 -0.8809 4.4211 -1.9338 20 6 0.5041 4.1282 -2.1837 21 1 -0.3634 0.4681 0.9148 22 1 -0.3634 0.5581 -0.8629 23 1 -0.3633 -1.0264 -0.0519 24 1 1.8934 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 3.9852 -0.1163 2.8196 27 1 2.3228 2.1681 -1.9057 28 1 1.7485 5.3007 -0.0165 29 1 2.5649 3.8400 0.5903 30 1 2.9141 5.1223 -2.1556 31 1 4.1157 5.0670 -0.8436 32 1 3.6344 3.5676 -1.6734 33 1 -0.1598 2.4162 0.5649 34 1 -0.1548 4.2016 0.7450 35 1 -2.2285 3.8491 -0.4378 36 1 -1.5417 2.5062 -1.4073 37 1 0.5919 3.4458 -3.0290 38 1 1.0463 5.0505 -2.3915 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378855492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:29 Heat of formation + Delta-G solvation = -56.982927 kcal Electronic energy + Delta-G solvation = -17441.498334 eV Core-core repulsion = 14897.458162 eV Total energy + Delta-G solvation = -2544.040172 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.56056 -36.22957 -33.63249 -31.76433 -30.18227 -29.66502 -27.66024 -25.63699 -23.72449 -22.74598 -21.60154 -19.68855 -18.28600 -16.90907 -15.95979 -15.64923 -14.77895 -14.52251 -13.91048 -13.69630 -13.44945 -12.89738 -12.65425 -12.48375 -12.15446 -11.56111 -11.45350 -11.22922 -11.11717 -10.94509 -10.79428 -10.72219 -10.52970 -10.26186 -10.10944 -9.87317 -9.54148 -9.45738 -9.21906 -8.90096 -8.39878 -7.29964 -6.03841 -4.13396 3.24189 3.32234 3.34488 4.36549 4.38653 5.02507 5.11014 5.23539 5.43648 5.46519 5.66917 5.72699 5.91685 5.95743 6.01104 6.13940 6.25031 6.32950 6.37032 6.41510 6.44808 6.55668 6.63699 6.69397 6.80221 6.98254 7.09127 7.15931 7.23373 7.47303 7.56997 7.76398 8.05694 8.12577 8.33131 8.64647 8.98645 9.53029 10.98267 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030042 B = 0.010126 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.810636 B = 2764.534972 C = 3384.018435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C 0.214 3.786 4 H 0.033 0.967 5 C -0.534 4.534 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.675 5.675 14 C 0.093 3.907 15 C -0.140 4.140 16 C -0.149 4.149 17 C -0.149 4.149 18 C 0.053 3.947 19 O -0.389 6.389 20 C 0.056 3.944 21 H 0.034 0.966 22 H 0.051 0.949 23 H 0.024 0.976 24 H 0.031 0.969 25 H 0.087 0.913 26 H 0.261 0.739 27 H 0.332 0.668 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.812 5.126 -4.182 8.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.050 0.950 5 C -0.573 4.573 6 H 0.075 0.925 7 C -0.136 4.136 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.306 5.306 14 C 0.000 4.000 15 C -0.180 4.180 16 C -0.206 4.206 17 C -0.187 4.187 18 C -0.023 4.023 19 O -0.307 6.307 20 C -0.021 4.021 21 H 0.053 0.947 22 H 0.070 0.930 23 H 0.043 0.957 24 H 0.050 0.950 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.151 0.849 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.540 4.883 -4.104 8.448 hybrid contribution 2.156 0.230 0.478 2.221 sum -3.383 5.113 -3.625 7.123 Atomic orbital electron populations 1.21807 0.99410 0.98538 1.00066 1.21521 0.91727 0.99518 1.01641 1.19162 0.92704 0.90767 0.86697 0.94951 1.21781 0.92028 1.36936 1.06565 0.92470 1.24903 0.97888 0.95097 0.95665 1.69870 1.34978 1.37469 1.10055 0.86692 0.86320 0.77465 0.78091 1.20858 1.21267 1.19994 1.61070 1.40581 1.14183 1.14771 1.22097 0.94130 0.90546 0.93203 1.22147 0.96299 0.98946 1.00571 1.21807 0.98327 1.01989 0.98510 1.23322 0.93868 1.03636 0.97835 1.23468 0.96926 0.92929 0.88980 1.88765 1.25256 1.55353 1.61375 1.23341 0.81894 0.99428 0.97443 0.94697 0.93016 0.95651 0.94964 0.89438 0.92944 0.84939 0.93374 0.89585 0.93938 0.93379 0.91547 0.88464 0.91484 0.90162 0.91995 0.92094 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 8.76 37.16 0.33 -2.44 16 2 C -0.11 -2.43 5.43 -26.73 -0.15 -2.57 16 3 C 0.21 4.90 1.00 -68.86 -0.07 4.83 16 4 H 0.03 0.82 5.60 -51.93 -0.29 0.53 16 5 C -0.53 -13.41 7.43 -34.44 -0.26 -13.66 16 6 H 0.06 1.42 5.92 -52.49 -0.31 1.11 16 7 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -24.14 11.31 55.43 0.63 -23.51 16 9 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.67 -13.18 5.09 -92.72 -0.47 -13.65 16 14 C 0.09 1.63 0.52 -130.07 -0.07 1.56 16 15 C -0.14 -2.49 4.41 -26.73 -0.12 -2.61 16 16 C -0.15 -2.44 9.39 37.16 0.35 -2.09 16 17 C -0.15 -2.54 5.82 -24.72 -0.14 -2.68 16 18 C 0.05 0.83 7.72 38.21 0.29 1.12 16 19 O -0.39 -6.61 11.52 -35.23 -0.41 -7.02 16 20 C 0.06 0.91 6.73 37.73 0.25 1.16 16 21 H 0.03 0.67 7.15 -51.93 -0.37 0.30 16 22 H 0.05 0.98 7.34 -51.93 -0.38 0.60 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.09 2.26 6.02 -51.93 -0.31 1.95 16 26 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.33 6.54 6.43 -39.29 -0.25 6.29 16 28 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 29 H 0.09 1.81 6.32 -51.93 -0.33 1.48 16 30 H 0.04 0.60 6.58 -51.93 -0.34 0.26 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.18 4.91 -51.93 -0.25 0.92 16 33 H 0.10 1.80 4.25 -51.93 -0.22 1.58 16 34 H 0.07 1.09 7.83 -51.93 -0.41 0.69 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.97 7.92 -51.93 -0.41 0.56 16 37 H 0.06 0.99 7.93 -51.93 -0.41 0.57 16 38 H 0.08 1.17 6.20 -51.93 -0.32 0.85 16 LS Contribution 280.66 15.07 4.23 4.23 Total: -1.00 -26.04 280.66 -6.58 -32.62 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.86 Total: 7.50 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: 0.33 Total: -15.72 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.15 Total: -37.17 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.41 Total: -7.02 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -26.04 -6.58 -32.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.366 kcal (2) G-P(sol) polarization free energy of solvation -26.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds