Wall clock time and date at job start Mon Mar 30 2020 03:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46718 * 2 1 4 4 H 1.08997 * 109.47108 * 58.28776 * 3 2 1 5 5 C 1.50702 * 109.46787 * 178.28362 * 3 2 1 6 6 H 1.07996 * 119.99854 * 120.00295 * 5 3 2 7 7 C 1.37881 * 120.00019 * 300.00079 * 5 3 2 8 8 N 1.31507 * 119.99967 * 0.02562 * 7 5 3 9 9 Si 1.86794 * 119.99670 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47189 * 90.00122 * 9 7 5 11 11 H 1.48507 * 109.47013 * 210.00205 * 9 7 5 12 12 H 1.48500 * 109.47733 * 330.00154 * 9 7 5 13 13 N 1.46895 * 109.47475 * 298.28357 * 3 2 1 14 14 C 1.46902 * 111.00179 * 135.14168 * 13 3 2 15 15 C 1.53002 * 110.53773 * 61.31510 * 14 13 3 16 16 C 1.52995 * 109.47281 * 63.62938 * 15 14 13 17 17 C 1.54812 * 110.48582 * 298.70109 * 14 13 3 18 18 C 1.54997 * 102.09264 * 262.20054 * 17 14 13 19 19 O 1.44385 * 103.48861 * 322.97576 * 18 17 14 20 20 C 1.43752 * 106.97242 * 40.06456 * 19 18 17 21 21 H 1.08995 * 109.47372 * 297.10183 * 1 2 3 22 22 H 1.09003 * 109.47174 * 57.10472 * 1 2 3 23 23 H 1.09002 * 109.46821 * 177.10447 * 1 2 3 24 24 H 1.09000 * 109.47051 * 240.00833 * 2 1 3 25 25 H 1.08994 * 109.47498 * 120.00297 * 2 1 3 26 26 H 0.96998 * 120.00223 * 180.02562 * 8 7 5 27 27 H 1.00896 * 111.00164 * 259.09592 * 13 3 2 28 28 H 1.09001 * 109.46630 * 183.63059 * 15 14 13 29 29 H 1.09003 * 109.47163 * 303.62289 * 15 14 13 30 30 H 1.08998 * 109.46943 * 65.89662 * 16 15 14 31 31 H 1.09001 * 109.47216 * 185.90135 * 16 15 14 32 32 H 1.09004 * 109.46819 * 305.89738 * 16 15 14 33 33 H 1.08995 * 110.91121 * 20.39896 * 17 14 13 34 34 H 1.09004 * 110.90648 * 143.96897 * 17 14 13 35 35 H 1.09004 * 110.62274 * 204.47857 * 18 17 14 36 36 H 1.08995 * 110.61908 * 81.47439 * 18 17 14 37 37 H 1.08992 * 109.88059 * 92.91089 * 20 19 18 38 38 H 1.08996 * 109.87470 * 214.05743 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6517 1.9651 0.8742 5 6 3.5464 1.4428 0.0426 6 1 4.1090 1.9025 -0.7565 7 6 4.2062 0.8562 1.1016 8 7 3.5210 0.2961 2.0743 9 14 6.0734 0.8572 1.1546 10 1 6.5481 2.0767 1.8566 11 1 6.5486 -0.3483 1.8802 12 1 6.6081 0.8438 -0.2307 13 7 1.5845 2.1230 -1.2196 14 6 1.0683 3.4637 -0.9129 15 6 2.1657 4.3333 -0.2960 16 6 3.2882 4.5373 -1.3154 17 6 -0.1489 3.3710 0.0392 18 6 -1.3407 3.4732 -0.9465 19 8 -0.8809 4.4211 -1.9338 20 6 0.5041 4.1282 -2.1837 21 1 -0.3634 0.4681 0.9148 22 1 -0.3634 0.5581 -0.8629 23 1 -0.3633 -1.0264 -0.0519 24 1 1.8934 -0.5137 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 3.9852 -0.1163 2.8196 27 1 2.3228 2.1681 -1.9057 28 1 1.7485 5.3007 -0.0165 29 1 2.5649 3.8400 0.5903 30 1 2.9141 5.1223 -2.1556 31 1 4.1157 5.0670 -0.8436 32 1 3.6344 3.5676 -1.6734 33 1 -0.1598 2.4162 0.5649 34 1 -0.1548 4.2016 0.7450 35 1 -2.2285 3.8491 -0.4378 36 1 -1.5417 2.5062 -1.4073 37 1 0.5919 3.4458 -3.0290 38 1 1.0463 5.0505 -2.3915 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378855492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:29 Heat of formation + Delta-G solvation = -73.127672 kcal Electronic energy + Delta-G solvation = -17442.198422 eV Core-core repulsion = 14897.458162 eV Total energy + Delta-G solvation = -2544.740260 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.95777 -37.79856 -35.29565 -33.61320 -31.58903 -31.21792 -29.15093 -27.38042 -25.12385 -24.50157 -22.96204 -21.37673 -19.81751 -18.75062 -17.40962 -17.05165 -16.64496 -15.86513 -15.48398 -15.22543 -15.00965 -14.54219 -14.26693 -13.89109 -13.53921 -13.22985 -13.20486 -12.92441 -12.64501 -12.56449 -12.53335 -12.23068 -12.07612 -11.84078 -11.57779 -11.45107 -11.29728 -11.10867 -10.76571 -10.51601 -10.38482 -8.97298 -8.02339 -6.17799 1.38000 1.41626 1.48564 2.42736 3.11262 3.21437 3.59209 3.71502 4.05038 4.13305 4.36303 4.39835 4.57394 4.64971 4.66213 4.68539 4.80950 4.86867 4.91230 4.96514 5.04170 5.12704 5.14574 5.20623 5.30300 5.40873 5.47479 5.52651 5.64353 5.72288 5.82822 5.94651 6.16112 6.28825 6.50645 6.89887 7.11155 7.51468 8.96932 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030042 B = 0.010126 C = 0.008272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.810636 B = 2764.534972 C = 3384.018435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.227 3.773 4 H 0.008 0.992 5 C -0.536 4.536 6 H 0.058 0.942 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.940 3.060 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.270 1.270 13 N -0.667 5.667 14 C 0.089 3.911 15 C -0.135 4.135 16 C -0.145 4.145 17 C -0.151 4.151 18 C 0.058 3.942 19 O -0.396 6.396 20 C 0.062 3.938 21 H 0.033 0.967 22 H 0.060 0.940 23 H 0.039 0.961 24 H 0.022 0.978 25 H 0.056 0.944 26 H 0.258 0.742 27 H 0.332 0.668 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.284 6.160 -5.362 9.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.142 4.142 3 C 0.119 3.881 4 H 0.026 0.974 5 C -0.575 4.575 6 H 0.076 0.924 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.767 3.233 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.194 1.194 13 N -0.298 5.298 14 C -0.004 4.004 15 C -0.175 4.175 16 C -0.202 4.202 17 C -0.189 4.189 18 C -0.018 4.018 19 O -0.315 6.315 20 C -0.015 4.015 21 H 0.052 0.948 22 H 0.079 0.921 23 H 0.058 0.942 24 H 0.041 0.959 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.151 0.849 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.013 5.927 -5.300 9.969 hybrid contribution 2.280 -0.063 0.842 2.431 sum -3.733 5.864 -4.458 8.258 Atomic orbital electron populations 1.21646 0.96679 0.99681 1.00408 1.21399 0.94170 0.99099 0.99573 1.18864 0.91427 0.90742 0.87097 0.97409 1.22110 0.93452 1.35800 1.06113 0.92406 1.25555 1.01371 0.95322 0.95738 1.69999 1.36142 1.38570 1.10577 0.85834 0.82255 0.77099 0.78073 1.20796 1.21531 1.19417 1.60993 1.40057 1.15579 1.13169 1.22198 0.94246 0.89470 0.94445 1.22052 0.96775 0.99208 0.99428 1.21761 0.97968 1.01513 0.98953 1.23312 0.94544 1.02891 0.98147 1.23525 0.97012 0.92985 0.88297 1.88764 1.25394 1.55700 1.61658 1.23299 0.81798 1.00049 0.96306 0.94773 0.92085 0.94154 0.95887 0.92522 0.93278 0.84932 0.91854 0.93462 0.91271 0.93133 0.93226 0.90251 0.90976 0.87657 0.92061 0.91837 0.88788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 8.76 71.98 0.63 -4.25 16 2 C -0.10 -4.81 5.43 30.60 0.17 -4.65 16 3 C 0.23 10.48 1.00 44.17 0.04 10.53 16 4 H 0.01 0.42 5.60 -2.39 -0.01 0.40 16 5 C -0.54 -27.13 7.43 25.60 0.19 -26.94 16 6 H 0.06 2.87 5.92 -2.91 -0.02 2.85 16 7 C 0.02 1.03 5.30 84.66 0.45 1.48 16 8 N -0.91 -50.94 11.31 21.45 0.24 -50.70 16 9 Si 0.94 42.55 29.54 68.60 2.03 44.58 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 N -0.67 -25.57 5.09 -447.25 -2.28 -27.85 16 14 C 0.09 2.98 0.52 4.52 0.00 2.99 16 15 C -0.14 -4.65 4.41 30.59 0.13 -4.52 16 16 C -0.14 -4.48 9.39 71.98 0.68 -3.81 16 17 C -0.15 -4.95 5.82 31.90 0.19 -4.76 16 18 C 0.06 1.65 7.72 72.67 0.56 2.21 16 19 O -0.40 -12.29 11.52 -148.98 -1.72 -14.00 16 20 C 0.06 1.85 6.73 72.35 0.49 2.34 16 21 H 0.03 1.30 7.15 -2.39 -0.02 1.28 16 22 H 0.06 2.22 7.34 -2.39 -0.02 2.20 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.06 3.00 6.02 -2.39 -0.01 2.99 16 26 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 27 H 0.33 12.78 6.43 -89.70 -0.58 12.21 16 28 H 0.06 1.96 8.09 -2.39 -0.02 1.95 16 29 H 0.05 2.00 6.32 -2.39 -0.02 1.98 16 30 H 0.07 1.76 6.58 -2.39 -0.02 1.74 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.05 1.70 4.91 -2.38 -0.01 1.69 16 33 H 0.08 2.91 4.25 -2.39 -0.01 2.90 16 34 H 0.07 2.26 7.83 -2.38 -0.02 2.24 16 35 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.06 1.76 7.92 -2.39 -0.02 1.75 16 37 H 0.06 1.88 7.93 -2.39 -0.02 1.86 16 38 H 0.09 2.49 6.20 -2.39 -0.01 2.48 16 Total: -1.00 -55.09 280.66 2.27 -52.82 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.47 Total: 24.53 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 3.53 Total: -29.38 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -2.04 Total: -78.55 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.72 Total: -14.00 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -55.09 2.27 -52.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378855492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.309 kcal (2) G-P(sol) polarization free energy of solvation -55.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds