Wall clock time and date at job start Mon Mar 30 2020 03:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46617 * 2 1 4 4 H 1.09007 * 109.47039 * 178.48898 * 3 2 1 5 5 C 1.50696 * 109.47761 * 58.48684 * 3 2 1 6 6 H 1.07998 * 120.00153 * 240.00505 * 5 3 2 7 7 C 1.37877 * 119.99657 * 59.99328 * 5 3 2 8 8 N 1.31510 * 120.00428 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99661 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47497 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47568 * 120.00543 * 9 7 5 12 12 H 1.48506 * 109.46974 * 240.00241 * 9 7 5 13 13 N 1.46907 * 109.47270 * 298.48455 * 3 2 1 14 14 C 1.47894 * 110.99947 * 80.37551 * 13 3 2 15 15 C 1.53995 * 107.05639 * 214.15908 * 14 13 3 16 16 C 1.54599 * 105.14097 * 1.22242 * 15 14 13 17 17 C 1.52998 * 110.72312 * 140.49683 * 16 15 14 18 18 O 1.42895 * 110.72139 * 263.59999 * 16 15 14 19 19 C 1.42902 * 114.00455 * 298.54845 * 18 16 15 20 20 C 1.48531 * 110.99904 * 322.97610 * 13 3 2 21 21 H 1.08997 * 109.47014 * 308.21527 * 1 2 3 22 22 H 1.08997 * 109.47142 * 68.22015 * 1 2 3 23 23 H 1.09001 * 109.46980 * 188.22079 * 1 2 3 24 24 H 1.08999 * 109.47158 * 119.99953 * 2 1 3 25 25 H 1.08997 * 109.46901 * 240.00083 * 2 1 3 26 26 H 0.96997 * 120.00296 * 179.97438 * 8 7 5 27 27 H 1.09006 * 109.91887 * 333.50264 * 14 13 3 28 28 H 1.08997 * 109.92359 * 94.60904 * 14 13 3 29 29 H 1.09001 * 110.31030 * 120.13805 * 15 14 13 30 30 H 1.09005 * 110.30766 * 242.20447 * 15 14 13 31 31 H 1.09000 * 109.47094 * 61.45640 * 17 16 15 32 32 H 1.09005 * 109.46890 * 181.45526 * 17 16 15 33 33 H 1.09001 * 109.46828 * 301.45291 * 17 16 15 34 34 H 1.08997 * 109.47091 * 59.99605 * 19 18 16 35 35 H 1.09000 * 109.47018 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.46757 * 299.99889 * 19 18 16 37 37 H 1.08998 * 110.66951 * 278.15489 * 20 13 3 38 38 H 1.09002 * 110.66659 * 41.28434 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4427 0.0271 5 6 1.5072 2.1637 1.2112 6 1 0.8890 3.0408 1.0889 7 6 1.8089 1.7037 2.4755 8 7 2.5620 0.6359 2.6244 9 14 1.1480 2.5974 3.9768 10 1 0.3336 3.7605 3.5420 11 1 0.3033 1.6708 4.7725 12 1 2.2823 3.0717 4.8097 13 7 1.5803 2.1244 -1.2174 14 6 0.1793 2.5761 -1.0750 15 6 -0.4776 2.4552 -2.4626 16 6 0.6245 1.8810 -3.3823 17 6 0.0380 0.8560 -4.3551 18 8 1.2864 2.9290 -4.0932 19 6 0.4282 3.6793 -4.9549 20 6 1.5919 1.2014 -2.3810 21 1 -0.3633 0.6357 0.8074 22 1 -0.3633 0.3813 -0.9543 23 1 -0.3633 -1.0171 0.1469 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 2.7746 0.3126 3.5138 27 1 -0.3446 1.9419 -0.3597 28 1 0.1556 3.6127 -0.7388 29 1 -1.3279 1.7745 -2.4206 30 1 -0.7957 3.4355 -2.8173 31 1 -0.7035 1.3407 -4.9902 32 1 0.8353 0.4460 -4.9752 33 1 -0.4355 0.0511 -3.7930 34 1 -0.3644 4.1408 -4.3660 35 1 1.0061 4.4545 -5.4580 36 1 -0.0116 3.0144 -5.6982 37 1 2.5939 1.1280 -2.8038 38 1 1.2208 0.2172 -2.0952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379581489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:19 Heat of formation + Delta-G solvation = -20.842159 kcal Electronic energy + Delta-G solvation = -17404.638380 eV Core-core repulsion = 14862.165389 eV Total energy + Delta-G solvation = -2542.472991 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.66170 -37.01148 -33.52034 -31.50786 -30.19568 -29.06072 -27.29791 -26.32819 -24.49094 -23.62601 -20.75017 -19.51025 -18.98735 -16.47705 -15.88093 -15.50121 -14.76312 -14.62771 -14.39575 -13.92074 -13.34056 -12.93278 -12.80802 -12.43595 -12.13130 -11.71303 -11.59341 -11.34848 -11.15737 -10.97021 -10.91523 -10.63536 -10.39629 -10.24386 -10.08765 -9.98953 -9.67615 -9.46920 -9.16117 -8.73935 -8.37973 -6.97458 -6.00024 -4.03383 3.29157 3.37746 3.41596 4.07728 4.42065 4.93814 5.03282 5.24939 5.30989 5.46195 5.46316 5.58141 5.65390 5.74632 5.78743 5.90749 6.10231 6.18340 6.27882 6.32174 6.35655 6.39851 6.52889 6.54464 6.81879 6.83809 6.93023 7.26696 7.36640 7.57680 7.65736 7.72079 7.82254 8.08780 8.44283 8.59911 9.02396 9.60785 11.06418 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042475 B = 0.008109 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.048242 B = 3452.129038 C = 3672.436315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.150 4.150 3 C 0.202 3.798 4 H 0.042 0.958 5 C -0.504 4.504 6 H 0.064 0.936 7 C 0.061 3.939 8 N -0.890 5.890 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.505 5.505 14 C 0.036 3.964 15 C -0.161 4.161 16 C 0.107 3.893 17 C -0.170 4.170 18 O -0.362 6.362 19 C 0.026 3.974 20 C 0.037 3.963 21 H 0.069 0.931 22 H 0.038 0.962 23 H 0.022 0.978 24 H 0.095 0.905 25 H 0.024 0.976 26 H 0.259 0.741 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 0.509 -11.011 12.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.189 4.189 3 C 0.095 3.905 4 H 0.060 0.940 5 C -0.543 4.543 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.529 5.529 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.210 1.210 13 N -0.228 5.228 14 C -0.092 4.092 15 C -0.199 4.199 16 C 0.067 3.933 17 C -0.227 4.227 18 O -0.280 6.280 19 C -0.071 4.071 20 C -0.091 4.091 21 H 0.087 0.913 22 H 0.057 0.943 23 H 0.041 0.959 24 H 0.113 0.887 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.617 0.889 -10.900 12.294 hybrid contribution -1.156 -0.278 0.973 1.536 sum -6.773 0.611 -9.926 12.033 Atomic orbital electron populations 1.22001 0.98310 0.98910 1.00729 1.22143 0.94463 1.01500 1.00837 1.19497 0.96231 0.88735 0.86036 0.93997 1.21258 1.31282 1.11787 0.89944 0.91803 1.24909 0.95206 0.95040 0.98844 1.69883 1.37411 1.23188 1.22463 0.86554 0.78757 0.79751 0.83065 1.19780 1.21189 1.21044 1.65086 1.18978 1.34149 1.04601 1.23039 0.90499 1.01404 0.94281 1.23153 0.97969 1.00923 0.97852 1.22471 0.93029 0.87039 0.90715 1.22291 1.01081 0.99434 0.99939 1.88040 1.34689 1.46658 1.58660 1.22714 0.95548 0.95503 0.93304 1.23454 0.98779 0.95826 0.91002 0.91256 0.94269 0.95884 0.88688 0.95748 0.93085 0.90400 0.92108 0.91648 0.91439 0.92648 0.91932 0.91509 0.94085 0.90248 0.94611 0.90790 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 7.87 37.16 0.29 -2.68 16 2 C -0.15 -3.49 4.90 -26.73 -0.13 -3.62 16 3 C 0.20 5.07 2.79 -68.86 -0.19 4.87 16 4 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 5 C -0.50 -13.49 6.32 -34.44 -0.22 -13.71 16 6 H 0.06 1.72 6.19 -52.49 -0.33 1.39 16 7 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 8 N -0.89 -25.00 11.33 55.43 0.63 -24.38 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 N -0.50 -11.26 5.46 -223.89 -1.22 -12.48 16 14 C 0.04 0.72 4.30 -2.76 -0.01 0.71 16 15 C -0.16 -2.64 5.54 -25.37 -0.14 -2.78 16 16 C 0.11 1.76 1.02 -88.76 -0.09 1.67 16 17 C -0.17 -2.23 8.28 37.16 0.31 -1.92 16 18 O -0.36 -6.21 10.46 -35.23 -0.37 -6.58 16 19 C 0.03 0.33 10.40 101.05 1.05 1.38 16 20 C 0.04 0.72 4.79 -1.90 -0.01 0.71 16 21 H 0.07 1.57 6.11 -51.93 -0.32 1.26 16 22 H 0.04 0.74 4.27 -51.93 -0.22 0.51 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.09 2.48 6.11 -51.93 -0.32 2.17 16 25 H 0.02 0.52 5.96 -51.93 -0.31 0.21 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.08 1.64 3.53 -51.93 -0.18 1.46 16 28 H 0.06 1.29 7.64 -51.93 -0.40 0.89 16 29 H 0.06 0.97 7.58 -51.93 -0.39 0.58 16 30 H 0.07 1.03 5.97 -51.93 -0.31 0.72 16 31 H 0.05 0.64 6.78 -51.93 -0.35 0.28 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 34 H 0.04 0.51 6.17 -51.93 -0.32 0.18 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.04 0.39 6.59 -51.93 -0.34 0.05 16 37 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.07 1.36 4.13 -51.93 -0.21 1.14 16 LS Contribution 273.78 15.07 4.13 4.13 Total: -1.00 -28.41 273.78 -6.77 -35.18 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.67 Total: 1.78 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 0.76 Total: -13.79 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: -0.59 Total: -36.85 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.37 Total: -6.58 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.41 -6.77 -35.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379581489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.340 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds