Wall clock time and date at job start Mon Mar 30 2020 03:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46617 * 2 1 4 4 H 1.09007 * 109.47039 * 178.48898 * 3 2 1 5 5 C 1.50696 * 109.47761 * 58.48684 * 3 2 1 6 6 H 1.07998 * 120.00153 * 240.00505 * 5 3 2 7 7 C 1.37877 * 119.99657 * 59.99328 * 5 3 2 8 8 N 1.31510 * 120.00428 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99661 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47497 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47568 * 120.00543 * 9 7 5 12 12 H 1.48506 * 109.46974 * 240.00241 * 9 7 5 13 13 N 1.46907 * 109.47270 * 298.48455 * 3 2 1 14 14 C 1.47894 * 110.99947 * 80.37551 * 13 3 2 15 15 C 1.53995 * 107.05639 * 214.15908 * 14 13 3 16 16 C 1.54599 * 105.14097 * 1.22242 * 15 14 13 17 17 C 1.52998 * 110.72312 * 140.49683 * 16 15 14 18 18 O 1.42895 * 110.72139 * 263.59999 * 16 15 14 19 19 C 1.42902 * 114.00455 * 298.54845 * 18 16 15 20 20 C 1.48531 * 110.99904 * 322.97610 * 13 3 2 21 21 H 1.08997 * 109.47014 * 308.21527 * 1 2 3 22 22 H 1.08997 * 109.47142 * 68.22015 * 1 2 3 23 23 H 1.09001 * 109.46980 * 188.22079 * 1 2 3 24 24 H 1.08999 * 109.47158 * 119.99953 * 2 1 3 25 25 H 1.08997 * 109.46901 * 240.00083 * 2 1 3 26 26 H 0.96997 * 120.00296 * 179.97438 * 8 7 5 27 27 H 1.09006 * 109.91887 * 333.50264 * 14 13 3 28 28 H 1.08997 * 109.92359 * 94.60904 * 14 13 3 29 29 H 1.09001 * 110.31030 * 120.13805 * 15 14 13 30 30 H 1.09005 * 110.30766 * 242.20447 * 15 14 13 31 31 H 1.09000 * 109.47094 * 61.45640 * 17 16 15 32 32 H 1.09005 * 109.46890 * 181.45526 * 17 16 15 33 33 H 1.09001 * 109.46828 * 301.45291 * 17 16 15 34 34 H 1.08997 * 109.47091 * 59.99605 * 19 18 16 35 35 H 1.09000 * 109.47018 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.46757 * 299.99889 * 19 18 16 37 37 H 1.08998 * 110.66951 * 278.15489 * 20 13 3 38 38 H 1.09002 * 110.66659 * 41.28434 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1296 1.4427 0.0271 5 6 1.5072 2.1637 1.2112 6 1 0.8890 3.0408 1.0889 7 6 1.8089 1.7037 2.4755 8 7 2.5620 0.6359 2.6244 9 14 1.1480 2.5974 3.9768 10 1 0.3336 3.7605 3.5420 11 1 0.3033 1.6708 4.7725 12 1 2.2823 3.0717 4.8097 13 7 1.5803 2.1244 -1.2174 14 6 0.1793 2.5761 -1.0750 15 6 -0.4776 2.4552 -2.4626 16 6 0.6245 1.8810 -3.3823 17 6 0.0380 0.8560 -4.3551 18 8 1.2864 2.9290 -4.0932 19 6 0.4282 3.6793 -4.9549 20 6 1.5919 1.2014 -2.3810 21 1 -0.3633 0.6357 0.8074 22 1 -0.3633 0.3813 -0.9543 23 1 -0.3633 -1.0171 0.1469 24 1 1.8934 -0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 2.7746 0.3126 3.5138 27 1 -0.3446 1.9419 -0.3597 28 1 0.1556 3.6127 -0.7388 29 1 -1.3279 1.7745 -2.4206 30 1 -0.7957 3.4355 -2.8173 31 1 -0.7035 1.3407 -4.9902 32 1 0.8353 0.4460 -4.9752 33 1 -0.4355 0.0511 -3.7930 34 1 -0.3644 4.1408 -4.3660 35 1 1.0061 4.4545 -5.4580 36 1 -0.0116 3.0144 -5.6982 37 1 2.5939 1.1280 -2.8038 38 1 1.2208 0.2172 -2.0952 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379581489.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:19 Heat of formation + Delta-G solvation = -40.608789 kcal Electronic energy + Delta-G solvation = -17405.495525 eV Core-core repulsion = 14862.165389 eV Total energy + Delta-G solvation = -2543.330136 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.14564 -38.48429 -35.25338 -33.29035 -31.71021 -30.57267 -28.89428 -27.62099 -25.95084 -25.47023 -22.36546 -20.94452 -20.73389 -18.01326 -17.60319 -17.26121 -16.19975 -15.97872 -15.89491 -15.51095 -15.07922 -14.54915 -14.11343 -13.82997 -13.40935 -13.22960 -13.05239 -13.01185 -12.80598 -12.60406 -12.50087 -12.34122 -11.99830 -11.83684 -11.74146 -11.68220 -11.26042 -11.17861 -10.75698 -10.47499 -10.32629 -8.71513 -8.08285 -6.18183 1.39195 1.42258 1.52672 2.42829 2.91613 3.20278 3.54458 3.69665 3.87683 4.16864 4.35576 4.50777 4.52501 4.55853 4.60426 4.60555 4.72975 4.77089 4.81157 4.83724 4.92188 5.04357 5.05731 5.11896 5.17906 5.26393 5.33356 5.46259 5.57405 5.68839 5.76080 5.86234 6.13380 6.47961 6.51910 6.73589 6.96138 7.49782 8.97332 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.042475 B = 0.008109 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.048242 B = 3452.129038 C = 3672.436315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.142 4.142 3 C 0.207 3.793 4 H -0.006 1.006 5 C -0.512 4.512 6 H 0.058 0.942 7 C 0.016 3.984 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.525 5.525 14 C 0.035 3.965 15 C -0.152 4.152 16 C 0.112 3.888 17 C -0.163 4.163 18 O -0.394 6.394 19 C 0.020 3.980 20 C 0.034 3.966 21 H 0.047 0.953 22 H 0.061 0.939 23 H 0.041 0.959 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.260 0.740 27 H 0.070 0.930 28 H 0.042 0.958 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.045 0.955 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.286 0.574 -12.433 14.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.181 4.181 3 C 0.099 3.901 4 H 0.012 0.988 5 C -0.550 4.550 6 H 0.076 0.924 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.205 1.205 12 H -0.211 1.211 13 N -0.249 5.249 14 C -0.093 4.093 15 C -0.190 4.190 16 C 0.072 3.928 17 C -0.221 4.221 18 O -0.314 6.314 19 C -0.076 4.076 20 C -0.094 4.094 21 H 0.066 0.934 22 H 0.079 0.921 23 H 0.060 0.940 24 H 0.081 0.919 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.656 0.962 -12.339 14.554 hybrid contribution -0.456 -0.246 1.356 1.452 sum -8.113 0.716 -10.983 13.673 Atomic orbital electron populations 1.21856 0.96066 0.99720 1.01108 1.21969 0.96357 0.99862 0.99960 1.19218 0.93498 0.90205 0.87173 0.98779 1.21441 1.31049 1.11639 0.90908 0.92411 1.25615 0.95496 0.95733 1.01424 1.70019 1.38376 1.24336 1.22955 0.85613 0.78119 0.78809 0.79766 1.19286 1.20468 1.21095 1.64898 1.20678 1.35008 1.04271 1.22989 0.89506 0.99932 0.96854 1.23120 0.98310 1.02529 0.95064 1.22403 0.91705 0.87707 0.90975 1.22240 1.01653 0.98718 0.99484 1.87990 1.36521 1.47339 1.59524 1.22937 0.95488 0.95907 0.93235 1.23488 0.99297 0.95875 0.90758 0.93380 0.92054 0.94024 0.91864 0.94264 0.93103 0.91248 0.93940 0.89229 0.90048 0.90335 0.91525 0.90603 0.93608 0.89051 0.92403 0.92039 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 7.87 71.98 0.57 -4.72 16 2 C -0.14 -6.68 4.90 30.59 0.15 -6.53 16 3 C 0.21 10.71 2.79 44.17 0.12 10.84 16 4 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 5 C -0.51 -28.07 6.32 25.60 0.16 -27.91 16 6 H 0.06 3.17 6.19 -2.91 -0.02 3.16 16 7 C 0.02 0.89 5.30 84.66 0.45 1.34 16 8 N -0.92 -52.84 11.33 21.45 0.24 -52.59 16 9 Si 0.95 43.87 29.54 68.60 2.03 45.89 16 10 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 N -0.52 -23.67 5.46 -862.26 -4.71 -28.38 16 14 C 0.03 1.39 4.30 86.45 0.37 1.76 16 15 C -0.15 -4.56 5.54 31.47 0.17 -4.39 16 16 C 0.11 3.39 1.02 -9.59 -0.01 3.38 16 17 C -0.16 -3.64 8.28 71.98 0.60 -3.04 16 18 O -0.39 -12.72 10.46 -148.98 -1.56 -14.28 16 19 C 0.02 0.45 10.40 113.37 1.18 1.63 16 20 C 0.03 1.26 4.79 86.65 0.42 1.68 16 21 H 0.05 2.15 6.11 -2.39 -0.01 2.14 16 22 H 0.06 2.18 4.27 -2.39 -0.01 2.17 16 23 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 24 H 0.06 3.39 6.11 -2.39 -0.01 3.38 16 25 H 0.04 1.69 5.96 -2.39 -0.01 1.67 16 26 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 27 H 0.07 2.88 3.53 -2.38 -0.01 2.87 16 28 H 0.04 1.80 7.64 -2.39 -0.02 1.79 16 29 H 0.09 2.27 7.58 -2.39 -0.02 2.26 16 30 H 0.08 2.23 5.97 -2.38 -0.01 2.21 16 31 H 0.08 1.41 6.78 -2.39 -0.02 1.39 16 32 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.08 1.57 8.13 -2.39 -0.02 1.55 16 34 H 0.05 0.97 6.17 -2.39 -0.01 0.96 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.04 6.59 -2.39 -0.02 1.02 16 37 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.08 2.77 4.13 -2.39 -0.01 2.77 16 Total: -1.00 -62.57 273.78 1.23 -61.34 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: 1.05 Total: 13.99 kcal Atomic # 6 Polarization: -30.15 SS G_CDS: 4.18 Total: -25.97 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -4.47 Total: -80.98 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -1.56 Total: -14.28 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -62.57 1.23 -61.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379581489.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.733 kcal (2) G-P(sol) polarization free energy of solvation -62.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds