Wall clock time and date at job start Mon Mar 30 2020 03:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46888 * 2 1 4 4 H 1.09005 * 109.46847 * 303.16013 * 3 2 1 5 5 C 1.50697 * 109.46929 * 183.15821 * 3 2 1 6 6 H 1.07997 * 120.00117 * 239.99454 * 5 3 2 7 7 C 1.37876 * 119.99731 * 60.00612 * 5 3 2 8 8 N 1.31506 * 120.00584 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99622 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46916 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47183 * 119.99710 * 9 7 5 12 12 H 1.48498 * 109.46961 * 239.99479 * 9 7 5 13 13 N 1.46901 * 109.46848 * 63.15781 * 3 2 1 14 14 C 1.47850 * 110.99764 * 186.46777 * 13 3 2 15 15 C 1.54906 * 104.79499 * 213.63916 * 14 13 3 16 16 C 1.55133 * 101.65545 * 37.06885 * 15 14 13 17 17 C 1.53000 * 110.86158 * 205.89436 * 16 15 14 18 18 O 1.42902 * 110.70559 * 82.72593 * 16 15 14 19 19 C 1.42902 * 113.99760 * 66.40640 * 18 16 15 20 20 C 1.47446 * 111.00056 * 65.62761 * 13 3 2 21 21 H 1.08999 * 109.47692 * 54.71463 * 1 2 3 22 22 H 1.08996 * 109.46860 * 174.71164 * 1 2 3 23 23 H 1.08999 * 109.47096 * 294.71528 * 1 2 3 24 24 H 1.08997 * 109.47101 * 240.00587 * 2 1 3 25 25 H 1.08997 * 109.47366 * 119.99891 * 2 1 3 26 26 H 0.97001 * 120.00740 * 180.02562 * 8 7 5 27 27 H 1.08996 * 110.37444 * 332.46782 * 14 13 3 28 28 H 1.09002 * 110.37146 * 94.80726 * 14 13 3 29 29 H 1.08994 * 110.99075 * 155.16391 * 15 14 13 30 30 H 1.09006 * 110.98867 * 278.97709 * 15 14 13 31 31 H 1.08998 * 109.47721 * 173.68742 * 17 16 15 32 32 H 1.09002 * 109.46582 * 293.69089 * 17 16 15 33 33 H 1.08999 * 109.46860 * 53.68250 * 17 16 15 34 34 H 1.09009 * 109.46699 * 299.99778 * 19 18 16 35 35 H 1.09000 * 109.47462 * 59.99758 * 19 18 16 36 36 H 1.08995 * 109.47453 * 180.02562 * 19 18 16 37 37 H 1.08995 * 109.88510 * 242.66334 * 20 13 3 38 38 H 1.08997 * 109.88660 * 3.68829 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6311 1.9725 -0.8604 5 6 3.5449 1.4433 -0.0783 6 1 4.1265 1.8964 0.7110 7 6 4.1793 0.8658 -1.1576 8 7 3.4712 0.3139 -2.1186 9 14 6.0449 0.8674 -1.2550 10 1 6.6024 1.5462 -0.0576 11 1 6.5390 -0.5320 -1.3063 12 1 6.4760 1.5897 -2.4787 13 7 1.6135 2.1126 1.2358 14 6 1.9545 3.5509 1.2034 15 6 2.2838 3.9126 2.6732 16 6 3.0085 2.6291 3.1570 17 6 2.8713 2.4641 4.6719 18 8 4.3855 2.6521 2.7757 19 6 5.1508 3.6706 3.4231 20 6 2.2558 1.5043 2.4154 21 1 -0.3634 0.5936 -0.8388 22 1 -0.3633 -1.0233 -0.0947 23 1 -0.3633 0.4297 0.9335 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.9175 -0.0927 -2.8778 27 1 2.8230 3.7208 0.5671 28 1 1.1044 4.1346 0.8502 29 1 2.9456 4.7772 2.7237 30 1 1.3728 4.0861 3.2461 31 1 3.2892 1.5032 4.9721 32 1 3.4094 3.2675 5.1750 33 1 1.8175 2.5042 4.9478 34 1 4.7335 4.6480 3.1806 35 1 5.1183 3.5191 4.5020 36 1 6.1842 3.6220 3.0800 37 1 1.4979 1.0720 3.0685 38 1 2.9567 0.7319 2.0989 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379581490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:21 Heat of formation + Delta-G solvation = -43.483592 kcal Electronic energy + Delta-G solvation = -17470.925448 eV Core-core repulsion = 14927.470651 eV Total energy + Delta-G solvation = -2543.454797 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.34443 -36.40810 -33.60476 -31.51761 -30.49817 -28.69345 -26.97771 -26.11400 -24.73486 -22.82050 -20.73106 -19.70956 -18.66461 -16.57154 -16.17100 -14.92560 -14.81692 -14.71954 -13.81841 -13.66025 -13.05023 -12.82285 -12.68251 -12.29112 -12.08818 -11.94893 -11.48840 -11.22533 -11.04728 -10.94374 -10.79186 -10.63897 -10.49043 -10.43113 -9.88473 -9.70613 -9.51971 -9.42564 -9.02831 -8.85385 -8.23701 -7.08533 -5.85393 -3.94421 3.35142 3.43579 3.51584 4.22216 4.54098 5.00631 5.11371 5.31992 5.40028 5.43472 5.56947 5.63852 5.75653 5.90190 5.92756 5.95641 6.17103 6.31972 6.41091 6.42567 6.52773 6.55251 6.67305 6.74838 6.84610 6.91378 7.16372 7.24117 7.43688 7.69650 7.81823 7.90257 8.11230 8.29487 8.37971 8.60280 9.21806 9.72383 11.15437 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021297 B = 0.013047 C = 0.009214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.396197 B = 2145.530516 C = 3038.283907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 C 0.205 3.795 4 H 0.036 0.964 5 C -0.538 4.538 6 H 0.082 0.918 7 C 0.064 3.936 8 N -0.892 5.892 9 Si 0.884 3.116 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.525 5.525 14 C 0.051 3.949 15 C -0.152 4.152 16 C 0.091 3.909 17 C -0.168 4.168 18 O -0.354 6.354 19 C 0.025 3.975 20 C 0.063 3.937 21 H 0.038 0.962 22 H 0.024 0.976 23 H 0.044 0.956 24 H 0.092 0.908 25 H 0.031 0.969 26 H 0.257 0.743 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.223 4.928 10.262 11.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.149 4.149 3 C 0.099 3.901 4 H 0.053 0.947 5 C -0.577 4.577 6 H 0.100 0.900 7 C -0.137 4.137 8 N -0.532 5.532 9 Si 0.712 3.288 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.215 1.215 13 N -0.249 5.249 14 C -0.077 4.077 15 C -0.191 4.191 16 C 0.051 3.949 17 C -0.225 4.225 18 O -0.272 6.272 19 C -0.071 4.071 20 C -0.065 4.065 21 H 0.058 0.942 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.110 0.890 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.675 4.635 9.968 11.119 hybrid contribution 1.933 0.296 -0.050 1.957 sum 0.258 4.931 9.918 11.079 Atomic orbital electron populations 1.21699 0.98998 0.98241 1.00436 1.21598 0.92067 0.99287 1.01925 1.19481 0.93295 0.90956 0.86403 0.94661 1.22195 0.92567 1.36447 1.06456 0.90012 1.24923 0.97649 0.95392 0.95741 1.69900 1.34658 1.38705 1.09947 0.86656 0.86842 0.77500 0.77789 1.19542 1.21342 1.21457 1.64007 1.55206 1.01445 1.04226 1.22805 0.99620 0.90745 0.94507 1.23255 0.99865 0.97430 0.98502 1.22817 0.82419 0.96652 0.93023 1.22271 1.02169 1.01938 0.96163 1.88183 1.19583 1.53167 1.66299 1.22715 0.96276 0.91712 0.96446 1.22697 0.95484 0.96101 0.92224 0.94248 0.95710 0.93646 0.88989 0.95050 0.93298 0.92068 0.92283 0.91708 0.91000 0.92016 0.92789 0.91593 0.94407 0.94546 0.90377 0.91694 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.72 37.16 0.36 -2.48 16 2 C -0.11 -2.67 5.12 -26.73 -0.14 -2.81 16 3 C 0.21 5.15 1.70 -68.86 -0.12 5.04 16 4 H 0.04 0.99 8.12 -51.93 -0.42 0.57 16 5 C -0.54 -14.59 6.18 -34.44 -0.21 -14.81 16 6 H 0.08 2.25 4.84 -52.49 -0.25 1.99 16 7 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 8 N -0.89 -25.69 11.30 55.43 0.63 -25.06 16 9 Si 0.88 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 12 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 13 N -0.53 -11.32 4.63 -224.67 -1.04 -12.36 16 14 C 0.05 1.02 6.41 -2.30 -0.01 1.00 16 15 C -0.15 -2.49 6.08 -24.60 -0.15 -2.64 16 16 C 0.09 1.58 0.89 -88.80 -0.08 1.51 16 17 C -0.17 -2.30 8.26 37.16 0.31 -2.00 16 18 O -0.35 -6.89 8.47 -35.23 -0.30 -7.18 16 19 C 0.03 0.38 10.35 101.05 1.05 1.42 16 20 C 0.06 1.27 4.79 -2.83 -0.01 1.25 16 21 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.04 0.90 7.85 -51.93 -0.41 0.49 16 24 H 0.09 2.49 5.99 -51.93 -0.31 2.18 16 25 H 0.03 0.75 6.78 -51.93 -0.35 0.39 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.06 1.38 6.80 -51.93 -0.35 1.03 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 0.98 6.30 -51.93 -0.33 0.65 16 30 H 0.07 1.06 8.03 -51.93 -0.42 0.64 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.66 6.45 -51.93 -0.33 0.32 16 33 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 34 H 0.04 0.52 6.40 -51.92 -0.33 0.19 16 35 H 0.04 0.46 6.39 -51.93 -0.33 0.13 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.19 7.82 -51.93 -0.41 0.78 16 38 H 0.08 1.93 5.60 -51.93 -0.29 1.63 16 LS Contribution 284.56 15.07 4.29 4.29 Total: -1.00 -28.87 284.56 -6.76 -35.62 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.21 Total: 0.61 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 0.90 Total: -12.82 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: -0.41 Total: -37.42 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.30 Total: -7.18 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.87 -6.76 -35.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379581490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.860 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds