Wall clock time and date at job start Mon Mar 30 2020 03:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53009 * 109.46888 * 2 1 4 4 H 1.09005 * 109.46847 * 303.16013 * 3 2 1 5 5 C 1.50697 * 109.46929 * 183.15821 * 3 2 1 6 6 H 1.07997 * 120.00117 * 239.99454 * 5 3 2 7 7 C 1.37876 * 119.99731 * 60.00612 * 5 3 2 8 8 N 1.31506 * 120.00584 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99622 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46916 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47183 * 119.99710 * 9 7 5 12 12 H 1.48498 * 109.46961 * 239.99479 * 9 7 5 13 13 N 1.46901 * 109.46848 * 63.15781 * 3 2 1 14 14 C 1.47850 * 110.99764 * 186.46777 * 13 3 2 15 15 C 1.54906 * 104.79499 * 213.63916 * 14 13 3 16 16 C 1.55133 * 101.65545 * 37.06885 * 15 14 13 17 17 C 1.53000 * 110.86158 * 205.89436 * 16 15 14 18 18 O 1.42902 * 110.70559 * 82.72593 * 16 15 14 19 19 C 1.42902 * 113.99760 * 66.40640 * 18 16 15 20 20 C 1.47446 * 111.00056 * 65.62761 * 13 3 2 21 21 H 1.08999 * 109.47692 * 54.71463 * 1 2 3 22 22 H 1.08996 * 109.46860 * 174.71164 * 1 2 3 23 23 H 1.08999 * 109.47096 * 294.71528 * 1 2 3 24 24 H 1.08997 * 109.47101 * 240.00587 * 2 1 3 25 25 H 1.08997 * 109.47366 * 119.99891 * 2 1 3 26 26 H 0.97001 * 120.00740 * 180.02562 * 8 7 5 27 27 H 1.08996 * 110.37444 * 332.46782 * 14 13 3 28 28 H 1.09002 * 110.37146 * 94.80726 * 14 13 3 29 29 H 1.08994 * 110.99075 * 155.16391 * 15 14 13 30 30 H 1.09006 * 110.98867 * 278.97709 * 15 14 13 31 31 H 1.08998 * 109.47721 * 173.68742 * 17 16 15 32 32 H 1.09002 * 109.46582 * 293.69089 * 17 16 15 33 33 H 1.08999 * 109.46860 * 53.68250 * 17 16 15 34 34 H 1.09009 * 109.46699 * 299.99778 * 19 18 16 35 35 H 1.09000 * 109.47462 * 59.99758 * 19 18 16 36 36 H 1.08995 * 109.47453 * 180.02562 * 19 18 16 37 37 H 1.08995 * 109.88510 * 242.66334 * 20 13 3 38 38 H 1.08997 * 109.88660 * 3.68829 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6311 1.9725 -0.8604 5 6 3.5449 1.4433 -0.0783 6 1 4.1265 1.8964 0.7110 7 6 4.1793 0.8658 -1.1576 8 7 3.4712 0.3139 -2.1186 9 14 6.0449 0.8674 -1.2550 10 1 6.6024 1.5462 -0.0576 11 1 6.5390 -0.5320 -1.3063 12 1 6.4760 1.5897 -2.4787 13 7 1.6135 2.1126 1.2358 14 6 1.9545 3.5509 1.2034 15 6 2.2838 3.9126 2.6732 16 6 3.0085 2.6291 3.1570 17 6 2.8713 2.4641 4.6719 18 8 4.3855 2.6521 2.7757 19 6 5.1508 3.6706 3.4231 20 6 2.2558 1.5043 2.4154 21 1 -0.3634 0.5936 -0.8388 22 1 -0.3633 -1.0233 -0.0947 23 1 -0.3633 0.4297 0.9335 24 1 1.8933 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.9175 -0.0927 -2.8778 27 1 2.8230 3.7208 0.5671 28 1 1.1044 4.1346 0.8502 29 1 2.9456 4.7772 2.7237 30 1 1.3728 4.0861 3.2461 31 1 3.2892 1.5032 4.9721 32 1 3.4094 3.2675 5.1750 33 1 1.8175 2.5042 4.9478 34 1 4.7335 4.6480 3.1806 35 1 5.1183 3.5191 4.5020 36 1 6.1842 3.6220 3.0800 37 1 1.4979 1.0720 3.0685 38 1 2.9567 0.7319 2.0989 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379581490.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:21 Heat of formation + Delta-G solvation = -62.507576 kcal Electronic energy + Delta-G solvation = -17471.750390 eV Core-core repulsion = 14927.470651 eV Total energy + Delta-G solvation = -2544.279739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.82060 -38.02079 -35.37305 -33.49147 -31.95008 -30.22617 -28.45988 -27.75457 -26.22525 -24.68423 -22.39147 -21.20315 -20.40577 -18.43546 -17.80983 -16.66171 -16.28386 -16.13950 -15.51590 -15.27082 -14.78923 -14.51111 -13.94899 -13.87153 -13.69861 -13.25105 -13.06317 -12.98061 -12.73371 -12.61183 -12.42555 -12.28916 -12.08353 -11.97559 -11.82346 -11.45816 -11.34241 -11.14086 -10.80672 -10.39255 -10.30186 -8.91257 -7.96761 -6.13312 1.34937 1.38280 1.51000 2.45713 2.95403 3.22964 3.54241 3.73634 3.96490 4.09711 4.46023 4.49052 4.57262 4.60093 4.63267 4.75480 4.77326 4.81854 4.93130 4.96233 5.01665 5.06577 5.11759 5.17349 5.27621 5.33167 5.37028 5.45781 5.57374 5.75122 5.84090 6.10533 6.27741 6.51225 6.52417 6.65728 7.11034 7.55640 9.00322 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.021297 B = 0.013047 C = 0.009214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.396197 B = 2145.530516 C = 3038.283907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.105 4.105 3 C 0.213 3.787 4 H -0.002 1.002 5 C -0.539 4.539 6 H 0.078 0.922 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.940 3.060 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.523 5.523 14 C 0.046 3.954 15 C -0.138 4.138 16 C 0.089 3.911 17 C -0.159 4.159 18 O -0.396 6.396 19 C 0.021 3.979 20 C 0.061 3.939 21 H 0.032 0.968 22 H 0.044 0.956 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.028 0.972 26 H 0.257 0.743 27 H 0.025 0.975 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 5.808 12.522 13.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.143 4.143 3 C 0.105 3.895 4 H 0.015 0.985 5 C -0.578 4.578 6 H 0.096 0.904 7 C -0.183 4.183 8 N -0.560 5.560 9 Si 0.767 3.233 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.246 5.246 14 C -0.082 4.082 15 C -0.176 4.176 16 C 0.049 3.951 17 C -0.217 4.217 18 O -0.316 6.316 19 C -0.075 4.075 20 C -0.067 4.067 21 H 0.051 0.949 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.893 5.526 12.245 13.567 hybrid contribution 1.997 0.048 -0.743 2.131 sum 0.104 5.574 11.502 12.782 Atomic orbital electron populations 1.21553 0.96167 0.99570 1.00802 1.21427 0.94549 0.98239 1.00134 1.19215 0.92033 0.91314 0.86892 0.98455 1.22454 0.93910 1.35473 1.05999 0.90446 1.25595 1.01329 0.95615 0.95795 1.70026 1.35919 1.39649 1.10409 0.85771 0.82526 0.77401 0.77553 1.19597 1.21047 1.21139 1.63963 1.55128 1.02255 1.03293 1.22853 0.98584 0.89973 0.96833 1.23219 1.01197 0.97521 0.95697 1.22852 0.81570 0.95584 0.95059 1.22200 1.03750 1.02684 0.93037 1.88111 1.20783 1.54876 1.67828 1.22896 0.95786 0.91132 0.97721 1.22740 0.95626 0.96288 0.92077 0.94919 0.93681 0.92323 0.92177 0.95313 0.93421 0.95675 0.91187 0.90179 0.88326 0.92196 0.90728 0.89784 0.93354 0.92002 0.90393 0.89624 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.07 9.72 71.98 0.70 -4.37 16 2 C -0.10 -5.18 5.12 30.60 0.16 -5.03 16 3 C 0.21 10.99 1.70 44.17 0.08 11.07 16 4 H 0.00 -0.15 8.12 -2.38 -0.02 -0.16 16 5 C -0.54 -30.11 6.18 25.60 0.16 -29.95 16 6 H 0.08 4.35 4.84 -2.91 -0.01 4.34 16 7 C 0.01 0.85 5.30 84.66 0.45 1.30 16 8 N -0.92 -54.56 11.30 21.45 0.24 -54.32 16 9 Si 0.94 46.02 29.54 68.60 2.03 48.05 16 10 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 13 N -0.52 -22.41 4.63 -864.72 -4.00 -26.41 16 14 C 0.05 1.79 6.41 86.77 0.56 2.34 16 15 C -0.14 -4.13 6.08 31.98 0.19 -3.94 16 16 C 0.09 2.90 0.89 -9.62 -0.01 2.89 16 17 C -0.16 -3.75 8.26 71.98 0.59 -3.16 16 18 O -0.40 -14.92 8.47 -148.98 -1.26 -16.19 16 19 C 0.02 0.56 10.35 113.37 1.17 1.74 16 20 C 0.06 2.38 4.79 86.65 0.41 2.79 16 21 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.06 2.23 7.85 -2.39 -0.02 2.21 16 24 H 0.06 3.36 5.99 -2.39 -0.01 3.35 16 25 H 0.03 1.39 6.78 -2.39 -0.02 1.37 16 26 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.02 1.15 6.80 -2.39 -0.02 1.13 16 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.08 2.16 6.30 -2.39 -0.02 2.15 16 30 H 0.10 2.46 8.03 -2.38 -0.02 2.44 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.47 6.45 -2.39 -0.02 1.45 16 33 H 0.08 1.69 8.11 -2.39 -0.02 1.67 16 34 H 0.05 1.19 6.40 -2.38 -0.02 1.18 16 35 H 0.06 1.35 6.39 -2.39 -0.02 1.34 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 37 H 0.09 2.94 7.82 -2.39 -0.02 2.92 16 38 H 0.05 2.14 5.60 -2.39 -0.01 2.13 16 Total: -1.00 -63.87 284.56 2.49 -61.38 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.02 Total: 11.81 kcal Atomic # 6 Polarization: -28.78 SS G_CDS: 4.46 Total: -24.32 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -3.76 Total: -80.73 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -1.26 Total: -16.19 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -63.87 2.49 -61.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379581490.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.128 kcal (2) G-P(sol) polarization free energy of solvation -63.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds