Wall clock time and date at job start Mon Mar 30 2020 03:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31513 * 119.99969 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47167 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47028 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47377 * 330.00144 * 9 7 5 13 13 N 1.46901 * 109.46769 * 294.99558 * 3 2 1 14 14 C 1.47836 * 111.00243 * 295.84622 * 13 3 2 15 15 C 1.54913 * 104.79534 * 213.64033 * 14 13 3 16 16 C 1.55133 * 101.65514 * 37.06543 * 15 14 13 17 17 C 1.52998 * 110.70901 * 205.96440 * 16 15 14 18 18 O 1.42904 * 110.70544 * 82.73290 * 16 15 14 19 19 C 1.42900 * 114.00076 * 66.39504 * 18 16 15 20 20 C 1.47446 * 110.99817 * 174.99938 * 13 3 2 21 21 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 22 22 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 23 23 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 25 25 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 26 26 H 0.96999 * 119.99716 * 179.97438 * 8 7 5 27 27 H 1.09000 * 110.37496 * 332.46267 * 14 13 3 28 28 H 1.08997 * 110.37870 * 94.80887 * 14 13 3 29 29 H 1.09002 * 110.98894 * 278.97190 * 15 14 13 30 30 H 1.09000 * 111.02464 * 155.17759 * 15 14 13 31 31 H 1.08994 * 109.47214 * 173.59948 * 17 16 15 32 32 H 1.09004 * 109.47082 * 293.60514 * 17 16 15 33 33 H 1.09004 * 109.46633 * 53.60141 * 17 16 15 34 34 H 1.09000 * 109.47102 * 180.02562 * 19 18 16 35 35 H 1.08999 * 109.47252 * 300.00598 * 19 18 16 36 36 H 1.09001 * 109.46416 * 60.00510 * 19 18 16 37 37 H 1.08996 * 109.89465 * 242.66597 * 20 13 3 38 38 H 1.09002 * 109.88733 * 3.69707 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3364 9 14 3.0963 0.1102 2.5707 10 1 2.8744 -1.3258 2.2647 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6514 2.0992 -1.2553 14 6 2.3036 1.4542 -2.4147 15 6 2.5565 2.6070 -3.4181 16 6 2.9271 3.7750 -2.4668 17 6 2.6035 5.1232 -3.1137 18 8 4.3061 3.7081 -2.0980 19 6 5.2094 3.9289 -3.1831 20 6 2.0221 3.5262 -1.2419 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 5.8769 0.4828 2.1133 27 1 3.2473 0.9988 -2.1143 28 1 1.6434 0.7065 -2.8542 29 1 1.6541 2.8363 -3.9849 30 1 3.3846 2.3695 -4.0860 31 1 2.7639 5.9216 -2.3893 32 1 3.2531 5.2781 -3.9751 33 1 1.5627 5.1302 -3.4376 34 1 6.2354 3.8612 -2.8213 35 1 5.0450 3.1739 -3.9520 36 1 5.0366 4.9195 -3.6037 37 1 1.1260 4.1428 -1.3116 38 1 2.5627 3.7603 -0.3248 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379581491.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:23 Heat of formation + Delta-G solvation = -34.586058 kcal Electronic energy + Delta-G solvation = -17462.054988 eV Core-core repulsion = 14918.986017 eV Total energy + Delta-G solvation = -2543.068971 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.37260 -36.56804 -33.68701 -31.82070 -30.48216 -29.07649 -27.11378 -26.39012 -24.63904 -22.46661 -21.36786 -19.50495 -19.05554 -16.63451 -16.16338 -15.38734 -14.76535 -14.71674 -14.06367 -13.64161 -13.17172 -12.84586 -12.67178 -12.42004 -12.30687 -12.00690 -11.74185 -11.44669 -11.21989 -11.18689 -10.92060 -10.70997 -10.56714 -10.29593 -10.11569 -9.76491 -9.61123 -9.40540 -9.05134 -8.92940 -8.43975 -7.14447 -5.96839 -3.95291 3.32559 3.43916 3.45875 4.27663 4.49228 4.97659 5.05207 5.30605 5.33404 5.37797 5.63164 5.71337 5.75882 5.89445 5.94011 6.01073 6.06176 6.08664 6.19843 6.28446 6.32117 6.40679 6.50153 6.60509 6.67563 6.73256 6.82817 6.92845 7.02737 7.15378 7.31961 7.68127 7.85289 8.11159 8.21981 8.61779 9.20030 9.66884 11.15822 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027792 B = 0.011273 C = 0.009013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.255925 B = 2483.155865 C = 3105.729726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C 0.173 3.827 4 H 0.036 0.964 5 C -0.540 4.540 6 H 0.100 0.900 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.880 3.120 10 H -0.281 1.281 11 H -0.300 1.300 12 H -0.265 1.265 13 N -0.517 5.517 14 C 0.047 3.953 15 C -0.154 4.154 16 C 0.093 3.907 17 C -0.168 4.168 18 O -0.348 6.348 19 C 0.027 3.973 20 C 0.063 3.937 21 H 0.041 0.959 22 H 0.061 0.939 23 H 0.032 0.968 24 H 0.056 0.944 25 H 0.046 0.954 26 H 0.260 0.740 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.034 0.966 37 H 0.070 0.930 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 4.578 -8.538 11.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.158 4.158 3 C 0.065 3.935 4 H 0.053 0.947 5 C -0.579 4.579 6 H 0.118 0.882 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.228 1.228 12 H -0.191 1.191 13 N -0.241 5.241 14 C -0.081 4.081 15 C -0.192 4.192 16 C 0.052 3.948 17 C -0.226 4.226 18 O -0.266 6.266 19 C -0.069 4.069 20 C -0.065 4.065 21 H 0.060 0.940 22 H 0.080 0.920 23 H 0.051 0.949 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.088 0.912 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.341 4.435 -8.258 11.317 hybrid contribution 0.501 -0.444 0.621 0.913 sum -5.840 3.991 -7.637 10.409 Atomic orbital electron populations 1.21742 0.97543 0.99233 1.01561 1.21891 0.93881 0.99457 1.00533 1.19931 0.95057 0.90428 0.88098 0.94661 1.21933 0.90439 1.37944 1.07583 0.88247 1.24976 0.94593 0.95636 0.97703 1.69927 1.08715 1.45499 1.29505 0.86978 0.80866 0.79788 0.81269 1.20807 1.22826 1.19051 1.63919 1.55116 1.01090 1.03946 1.22925 0.99334 0.95613 0.90213 1.23272 1.00780 0.97091 0.98041 1.22723 0.83258 0.93083 0.95696 1.22276 1.01725 0.97801 1.00772 1.88252 1.14131 1.92047 1.32157 1.22708 0.94469 0.98484 0.91278 1.22644 0.95355 0.91171 0.97329 0.94013 0.92019 0.94912 0.92497 0.93589 0.93004 0.90655 0.92264 0.91115 0.91528 0.92014 0.92661 0.91660 0.90086 0.94523 0.94751 0.91211 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.80 37.16 0.36 -2.32 16 2 C -0.12 -2.66 4.84 -26.73 -0.13 -2.79 16 3 C 0.17 4.11 1.15 -68.86 -0.08 4.03 16 4 H 0.04 0.89 7.19 -51.93 -0.37 0.52 16 5 C -0.54 -14.94 6.99 -34.44 -0.24 -15.18 16 6 H 0.10 2.97 5.21 -52.49 -0.27 2.70 16 7 C 0.07 2.11 5.45 -17.82 -0.10 2.01 16 8 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 9 Si 0.88 22.33 24.41 -169.99 -4.15 18.18 16 10 H -0.28 -6.99 6.83 56.52 0.39 -6.61 16 11 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 12 H -0.27 -6.49 6.53 56.52 0.37 -6.12 16 13 N -0.52 -10.71 4.62 -224.68 -1.04 -11.75 16 14 C 0.05 0.92 5.08 -2.30 -0.01 0.91 16 15 C -0.15 -2.52 6.08 -24.59 -0.15 -2.67 16 16 C 0.09 1.62 0.91 -88.80 -0.08 1.54 16 17 C -0.17 -2.29 8.25 37.16 0.31 -1.99 16 18 O -0.35 -7.03 8.79 -35.23 -0.31 -7.34 16 19 C 0.03 0.43 10.36 101.05 1.05 1.48 16 20 C 0.06 1.23 5.67 -2.83 -0.02 1.22 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 1.10 7.75 -51.93 -0.40 0.70 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 1.25 7.14 -51.93 -0.37 0.87 16 25 H 0.05 1.09 3.22 -51.93 -0.17 0.92 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.08 1.74 5.98 -51.93 -0.31 1.43 16 28 H 0.06 1.07 8.10 -51.93 -0.42 0.65 16 29 H 0.07 1.03 8.02 -51.93 -0.42 0.61 16 30 H 0.07 1.04 6.30 -51.93 -0.33 0.71 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.68 6.46 -51.93 -0.34 0.34 16 33 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 34 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.04 0.54 6.40 -51.93 -0.33 0.20 16 36 H 0.03 0.46 6.40 -51.93 -0.33 0.12 16 37 H 0.07 1.19 7.82 -51.93 -0.41 0.78 16 38 H 0.08 1.73 6.99 -51.93 -0.36 1.37 16 LS Contribution 278.77 15.07 4.20 4.20 Total: -1.00 -30.43 278.77 -5.74 -36.17 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.13 Total: 1.26 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 0.91 Total: -13.77 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: -0.26 Total: -38.70 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.31 Total: -7.34 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.15 Total: 18.18 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.43 -5.74 -36.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379581491.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.579 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds