Wall clock time and date at job start Mon Mar 30 2020 03:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.50699 * 109.47083 * 174.99799 * 3 2 1 6 6 H 1.07999 * 120.00019 * 119.99669 * 5 3 2 7 7 C 1.37877 * 120.00129 * 299.99954 * 5 3 2 8 8 N 1.31513 * 119.99969 * 180.02562 * 7 5 3 9 9 Si 1.86797 * 119.99840 * 359.97438 * 7 5 3 10 10 H 1.48497 * 109.47167 * 89.99961 * 9 7 5 11 11 H 1.48500 * 109.47028 * 210.00109 * 9 7 5 12 12 H 1.48497 * 109.47377 * 330.00144 * 9 7 5 13 13 N 1.46901 * 109.46769 * 294.99558 * 3 2 1 14 14 C 1.47836 * 111.00243 * 295.84622 * 13 3 2 15 15 C 1.54913 * 104.79534 * 213.64033 * 14 13 3 16 16 C 1.55133 * 101.65514 * 37.06543 * 15 14 13 17 17 C 1.52998 * 110.70901 * 205.96440 * 16 15 14 18 18 O 1.42904 * 110.70544 * 82.73290 * 16 15 14 19 19 C 1.42900 * 114.00076 * 66.39504 * 18 16 15 20 20 C 1.47446 * 110.99817 * 174.99938 * 13 3 2 21 21 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 22 22 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 23 23 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 24 24 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 25 25 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 26 26 H 0.96999 * 119.99716 * 179.97438 * 8 7 5 27 27 H 1.09000 * 110.37496 * 332.46267 * 14 13 3 28 28 H 1.08997 * 110.37870 * 94.80887 * 14 13 3 29 29 H 1.09002 * 110.98894 * 278.97190 * 15 14 13 30 30 H 1.09000 * 111.02464 * 155.17759 * 15 14 13 31 31 H 1.08994 * 109.47214 * 173.59948 * 17 16 15 32 32 H 1.09004 * 109.47082 * 293.60514 * 17 16 15 33 33 H 1.09004 * 109.46633 * 53.60141 * 17 16 15 34 34 H 1.09000 * 109.47102 * 180.02562 * 19 18 16 35 35 H 1.08999 * 109.47252 * 300.00598 * 19 18 16 36 36 H 1.09001 * 109.46416 * 60.00510 * 19 18 16 37 37 H 1.08996 * 109.89465 * 242.66597 * 20 13 3 38 38 H 1.09002 * 109.88733 * 3.69707 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2280 8 7 5.4539 0.8806 1.3364 9 14 3.0963 0.1102 2.5707 10 1 2.8744 -1.3258 2.2647 11 1 3.7941 0.2362 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6514 2.0992 -1.2553 14 6 2.3036 1.4542 -2.4147 15 6 2.5565 2.6070 -3.4181 16 6 2.9271 3.7750 -2.4668 17 6 2.6035 5.1232 -3.1137 18 8 4.3061 3.7081 -2.0980 19 6 5.2094 3.9289 -3.1831 20 6 2.0221 3.5262 -1.2419 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5138 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 5.8769 0.4828 2.1133 27 1 3.2473 0.9988 -2.1143 28 1 1.6434 0.7065 -2.8542 29 1 1.6541 2.8363 -3.9849 30 1 3.3846 2.3695 -4.0860 31 1 2.7639 5.9216 -2.3893 32 1 3.2531 5.2781 -3.9751 33 1 1.5627 5.1302 -3.4376 34 1 6.2354 3.8612 -2.8213 35 1 5.0450 3.1739 -3.9520 36 1 5.0366 4.9195 -3.6037 37 1 1.1260 4.1428 -1.3116 38 1 2.5627 3.7603 -0.3248 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379581491.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:22 Heat of formation + Delta-G solvation = -56.871879 kcal Electronic energy + Delta-G solvation = -17463.021374 eV Core-core repulsion = 14918.986017 eV Total energy + Delta-G solvation = -2544.035356 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.86358 -38.17798 -35.37416 -33.89949 -31.88196 -30.56261 -28.80192 -27.85295 -26.11589 -24.27574 -22.97183 -20.93311 -20.83209 -18.66624 -17.60582 -17.18878 -16.20910 -16.13330 -15.89504 -15.27785 -14.86994 -14.31369 -14.26552 -13.96435 -13.85649 -13.56772 -13.15353 -12.99937 -12.86692 -12.73075 -12.44942 -12.30463 -12.12454 -11.90977 -11.73347 -11.53928 -11.34168 -11.09210 -11.05263 -10.61302 -10.30027 -8.90897 -8.20898 -6.21578 1.28687 1.34536 1.44082 2.35382 2.96289 3.12854 3.43050 3.71580 3.92325 4.07370 4.36178 4.43804 4.46226 4.48378 4.56455 4.62179 4.67723 4.77371 4.79593 4.88505 4.96141 4.99423 5.04075 5.12634 5.14373 5.21564 5.25730 5.34826 5.39514 5.50591 5.56551 5.65025 6.31566 6.41457 6.46007 6.57601 6.96374 7.43803 8.95197 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027792 B = 0.011273 C = 0.009013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.255925 B = 2483.155865 C = 3105.729726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.120 4.120 3 C 0.177 3.823 4 H 0.023 0.977 5 C -0.529 4.529 6 H 0.068 0.932 7 C 0.012 3.988 8 N -0.949 5.949 9 Si 0.939 3.061 10 H -0.271 1.271 11 H -0.305 1.305 12 H -0.250 1.250 13 N -0.509 5.509 14 C 0.046 3.954 15 C -0.142 4.142 16 C 0.087 3.913 17 C -0.159 4.159 18 O -0.396 6.396 19 C 0.025 3.975 20 C 0.057 3.943 21 H 0.042 0.958 22 H 0.071 0.929 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.031 0.969 26 H 0.259 0.741 27 H 0.030 0.970 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.575 4.938 -10.004 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.158 4.158 3 C 0.068 3.932 4 H 0.041 0.959 5 C -0.568 4.568 6 H 0.086 0.914 7 C -0.185 4.185 8 N -0.591 5.591 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.234 1.234 12 H -0.174 1.174 13 N -0.231 5.231 14 C -0.082 4.082 15 C -0.180 4.180 16 C 0.047 3.953 17 C -0.216 4.216 18 O -0.315 6.315 19 C -0.071 4.071 20 C -0.071 4.071 21 H 0.062 0.938 22 H 0.090 0.910 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.049 0.951 26 H 0.068 0.932 27 H 0.048 0.952 28 H 0.096 0.904 29 H 0.121 0.879 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.118 0.882 38 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.947 4.802 -9.747 14.075 hybrid contribution 1.351 -0.498 0.993 1.749 sum -7.595 4.304 -8.754 12.363 Atomic orbital electron populations 1.21649 0.94256 1.01064 1.02141 1.21808 0.96758 0.97553 0.99659 1.19777 0.92107 0.91904 0.89376 0.95949 1.22228 0.92703 1.35722 1.06144 0.91400 1.25757 0.95551 0.96816 1.00330 1.70082 1.10660 1.47798 1.30517 0.86010 0.79737 0.79502 0.78029 1.19722 1.23376 1.17356 1.63976 1.54573 1.01673 1.02903 1.22907 0.97402 0.97146 0.90777 1.23255 1.02477 0.94994 0.97272 1.22863 0.81786 0.95706 0.94905 1.22204 1.03511 0.94992 1.00922 1.88190 1.16011 1.92617 1.34724 1.22838 0.93411 1.00399 0.90497 1.22788 0.96752 0.90810 0.96744 0.93848 0.91013 0.92484 0.92765 0.95122 0.93211 0.95162 0.90440 0.87929 0.90724 0.92245 0.90945 0.89352 0.90921 0.93578 0.91857 0.88240 0.94693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 9.80 71.98 0.71 -3.87 16 2 C -0.12 -5.16 4.84 30.60 0.15 -5.01 16 3 C 0.18 8.40 1.15 44.17 0.05 8.45 16 4 H 0.02 1.13 7.19 -2.39 -0.02 1.11 16 5 C -0.53 -30.25 6.99 25.60 0.18 -30.08 16 6 H 0.07 4.28 5.21 -2.91 -0.02 4.26 16 7 C 0.01 0.72 5.45 84.65 0.46 1.18 16 8 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 9 Si 0.94 46.84 24.41 68.60 1.67 48.51 16 10 H -0.27 -12.95 6.83 99.48 0.68 -12.28 16 11 H -0.31 -15.36 7.11 99.48 0.71 -14.65 16 12 H -0.25 -11.66 6.53 99.48 0.65 -11.01 16 13 N -0.51 -20.50 4.62 -864.75 -4.00 -24.49 16 14 C 0.05 1.73 5.08 86.78 0.44 2.17 16 15 C -0.14 -4.30 6.08 31.98 0.19 -4.10 16 16 C 0.09 2.91 0.91 -9.62 -0.01 2.90 16 17 C -0.16 -3.79 8.25 71.98 0.59 -3.20 16 18 O -0.40 -16.22 8.79 -148.98 -1.31 -17.53 16 19 C 0.02 0.76 10.36 113.37 1.17 1.93 16 20 C 0.06 2.18 5.67 86.65 0.49 2.68 16 21 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 22 H 0.07 2.30 7.75 -2.39 -0.02 2.29 16 23 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.05 2.32 7.14 -2.39 -0.02 2.31 16 25 H 0.03 1.41 3.22 -2.39 -0.01 1.40 16 26 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 27 H 0.03 1.43 5.98 -2.39 -0.01 1.41 16 28 H 0.08 2.63 8.10 -2.39 -0.02 2.61 16 29 H 0.10 2.49 8.02 -2.39 -0.02 2.47 16 30 H 0.07 2.15 6.30 -2.39 -0.02 2.13 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.49 6.46 -2.39 -0.02 1.48 16 33 H 0.09 1.72 8.11 -2.38 -0.02 1.70 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 1.30 6.40 -2.39 -0.02 1.29 16 36 H 0.06 1.55 6.40 -2.39 -0.02 1.53 16 37 H 0.10 3.15 7.82 -2.39 -0.02 3.13 16 38 H 0.03 1.61 6.99 -2.39 -0.02 1.60 16 Total: -1.00 -68.72 278.77 2.04 -66.68 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.94 Total: 14.64 kcal Atomic # 6 Polarization: -31.37 SS G_CDS: 4.43 Total: -26.94 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -3.70 Total: -85.36 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -1.31 Total: -17.53 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.67 Total: 48.51 kcal Total: -68.72 2.04 -66.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379581491.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.809 kcal (2) G-P(sol) polarization free energy of solvation -68.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds