Wall clock time and date at job start Mon Mar 30 2020 03:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 H 1.08998 * 109.47434 * 180.22487 * 3 2 1 5 5 C 1.50697 * 109.47152 * 300.22033 * 3 2 1 6 6 H 1.08003 * 119.99863 * 119.99400 * 5 3 2 7 7 C 1.37876 * 120.00390 * 300.27861 * 5 3 2 8 8 N 1.31519 * 120.00516 * 179.72229 * 7 5 3 9 9 Si 1.86803 * 119.99841 * 359.71702 * 7 5 3 10 10 H 1.48503 * 109.46782 * 90.00154 * 9 7 5 11 11 H 1.48499 * 109.47535 * 210.00451 * 9 7 5 12 12 H 1.48503 * 109.47135 * 330.00694 * 9 7 5 13 13 N 1.46899 * 109.47245 * 60.21934 * 3 2 1 14 14 C 1.48532 * 110.99580 * 59.76616 * 13 3 2 15 15 C 1.54936 * 103.22847 * 159.72465 * 14 13 3 16 16 C 1.54600 * 102.91845 * 322.58449 * 15 14 13 17 17 C 1.53000 * 110.39318 * 140.91615 * 16 15 14 18 18 O 1.42898 * 110.30950 * 263.04475 * 16 15 14 19 19 C 1.42908 * 113.99553 * 295.71505 * 18 16 15 20 20 C 1.47891 * 111.00117 * 177.16222 * 13 3 2 21 21 H 1.08999 * 109.47069 * 185.09290 * 1 2 3 22 22 H 1.09004 * 109.46545 * 305.09247 * 1 2 3 23 23 H 1.08997 * 109.47123 * 65.08661 * 1 2 3 24 24 H 1.09008 * 109.46540 * 240.00110 * 2 1 3 25 25 H 1.08999 * 109.47487 * 120.00578 * 2 1 3 26 26 H 0.96996 * 120.00283 * 179.97438 * 8 7 5 27 27 H 1.09003 * 110.66939 * 278.15305 * 14 13 3 28 28 H 1.08999 * 110.67157 * 41.28592 * 14 13 3 29 29 H 1.08996 * 110.72593 * 204.22926 * 15 14 13 30 30 H 1.08993 * 110.87851 * 81.01078 * 15 14 13 31 31 H 1.09001 * 109.46825 * 304.23496 * 17 16 15 32 32 H 1.09000 * 109.46913 * 64.23564 * 17 16 15 33 33 H 1.09001 * 109.46896 * 184.23697 * 17 16 15 34 34 H 1.08998 * 109.47258 * 60.00093 * 19 18 16 35 35 H 1.08999 * 109.46787 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.46933 * 299.99647 * 19 18 16 37 37 H 1.08995 * 109.92049 * 333.50700 * 20 13 3 38 38 H 1.09000 * 109.91870 * 94.60892 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4425 -0.0040 5 6 1.5333 2.1545 -1.2277 6 1 0.9128 3.0324 -1.1252 7 6 1.8571 1.6817 -2.4818 8 7 1.4103 2.2999 -3.5532 9 14 2.9304 0.1632 -2.6591 10 1 2.0720 -1.0481 -2.6962 11 1 3.7128 0.2542 -3.9180 12 1 3.8596 0.0761 -1.5040 13 7 1.5548 2.1335 1.2021 14 6 2.0309 1.4550 2.4346 15 6 1.8977 2.5542 3.5184 16 6 2.3039 3.8386 2.7598 17 6 1.4167 5.0110 3.1831 18 8 3.6784 4.1446 3.0030 19 6 3.9711 4.4602 4.3657 20 6 2.0843 3.5126 1.2707 21 1 -0.3633 -1.0236 0.0912 22 1 -0.3632 0.5908 0.8409 23 1 -0.3633 0.4329 -0.9320 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6384 1.9675 -4.4354 27 1 1.3969 0.6010 2.6731 28 1 3.0704 1.1455 2.3264 29 1 2.5797 2.3637 4.3470 30 1 0.8702 2.6256 3.8750 31 1 0.3701 4.7496 3.0266 32 1 1.5828 5.2299 4.2379 33 1 1.6652 5.8887 2.5863 34 1 3.7137 3.6111 4.9987 35 1 5.0337 4.6807 4.4673 36 1 3.3892 5.3301 4.6703 37 1 3.0308 3.5742 0.7338 38 1 1.3658 4.2083 0.8373 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379581492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:24 Heat of formation + Delta-G solvation = -34.592667 kcal Electronic energy + Delta-G solvation = -17142.396770 eV Core-core repulsion = 14599.327513 eV Total energy + Delta-G solvation = -2543.069257 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.53367 -36.89595 -34.00903 -31.79786 -30.41291 -29.36688 -27.21901 -26.27240 -25.00629 -22.81285 -21.56933 -19.56075 -19.15059 -16.39561 -16.29737 -15.51626 -15.12167 -15.06930 -14.33969 -13.60820 -13.38829 -13.06471 -12.81496 -12.65344 -12.41687 -12.14217 -11.95012 -11.47636 -11.36763 -11.07474 -11.00785 -10.81488 -10.55860 -10.40884 -10.23341 -10.01411 -9.82259 -9.38464 -9.23331 -8.94679 -8.49882 -7.44094 -6.03415 -4.00398 3.29193 3.39526 3.40745 3.93184 4.43201 4.84505 4.90256 5.06015 5.15108 5.30448 5.36625 5.39744 5.60483 5.65953 5.70267 5.77115 6.04683 6.08009 6.17086 6.21012 6.23037 6.29102 6.34700 6.37632 6.48377 6.68081 6.71700 6.88306 7.07902 7.12179 7.44633 7.46560 7.61468 7.92678 8.00123 8.67177 9.03752 9.59289 11.09553 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034364 B = 0.008466 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.622376 B = 3306.408867 C = 3488.044941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 C 0.177 3.823 4 H 0.000 1.000 5 C -0.496 4.496 6 H 0.081 0.919 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.881 3.119 10 H -0.278 1.278 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.494 5.494 14 C 0.034 3.966 15 C -0.146 4.146 16 C 0.097 3.903 17 C -0.167 4.167 18 O -0.377 6.377 19 C 0.026 3.974 20 C 0.067 3.933 21 H 0.021 0.979 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.263 0.737 27 H 0.075 0.925 28 H 0.036 0.964 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.737 1.043 14.572 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.158 4.158 3 C 0.069 3.931 4 H 0.017 0.983 5 C -0.534 4.534 6 H 0.099 0.901 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.711 3.289 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.219 5.219 14 C -0.094 4.094 15 C -0.184 4.184 16 C 0.057 3.943 17 C -0.224 4.224 18 O -0.296 6.296 19 C -0.071 4.071 20 C -0.061 4.061 21 H 0.040 0.960 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.302 1.042 14.168 14.266 hybrid contribution 1.373 -0.926 0.015 1.656 sum 2.674 0.116 14.184 14.434 Atomic orbital electron populations 1.21481 0.95281 0.98106 1.03414 1.21848 0.97620 0.97955 0.98339 1.19950 0.92945 0.90952 0.89270 0.98274 1.20859 1.31811 1.13046 0.87722 0.90097 1.24877 0.95564 0.96690 0.95869 1.69876 1.45567 1.40507 0.97853 0.86957 0.81049 0.84029 0.76828 1.20457 1.22500 1.19497 1.64822 1.54771 1.00780 1.01502 1.23145 0.98298 0.96827 0.91153 1.23094 1.01701 0.95674 0.97964 1.22559 0.81094 0.93456 0.97181 1.22328 1.00634 0.98598 1.00860 1.88033 1.26180 1.89373 1.26004 1.22737 1.01005 0.98990 0.84338 1.22621 1.00052 0.92530 0.90878 0.95983 0.92291 0.91525 0.93690 0.94842 0.92704 0.90663 0.94524 0.91382 0.90330 0.90881 0.92818 0.91818 0.94156 0.90198 0.94016 0.92424 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.64 9.48 37.16 0.35 -2.29 16 2 C -0.12 -2.67 4.91 -26.73 -0.13 -2.80 16 3 C 0.18 4.24 1.04 -68.87 -0.07 4.17 16 4 H 0.00 0.00 7.06 -51.93 -0.37 -0.37 16 5 C -0.50 -13.77 7.54 -34.44 -0.26 -14.03 16 6 H 0.08 2.45 7.67 -52.48 -0.40 2.04 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -27.40 13.96 55.43 0.77 -26.63 16 9 Si 0.88 22.26 24.37 -169.99 -4.14 18.12 16 10 H -0.28 -6.84 6.86 56.52 0.39 -6.45 16 11 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 12 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 13 N -0.49 -10.28 4.26 -223.90 -0.95 -11.23 16 14 C 0.03 0.60 5.40 -1.90 -0.01 0.59 16 15 C -0.15 -2.14 6.13 -24.87 -0.15 -2.29 16 16 C 0.10 1.54 1.05 -89.26 -0.09 1.45 16 17 C -0.17 -2.20 8.00 37.16 0.30 -1.91 16 18 O -0.38 -6.15 10.31 -35.23 -0.36 -6.51 16 19 C 0.03 0.30 10.32 101.05 1.04 1.35 16 20 C 0.07 1.34 5.28 -2.76 -0.01 1.32 16 21 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 1.19 7.46 -51.93 -0.39 0.80 16 23 H 0.07 1.57 7.40 -51.93 -0.38 1.18 16 24 H 0.04 1.06 3.26 -51.92 -0.17 0.89 16 25 H 0.03 0.66 6.92 -51.93 -0.36 0.30 16 26 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.08 1.24 7.65 -51.93 -0.40 0.84 16 28 H 0.04 0.67 8.00 -51.93 -0.42 0.26 16 29 H 0.07 0.88 6.15 -51.93 -0.32 0.57 16 30 H 0.08 1.06 7.84 -51.93 -0.41 0.65 16 31 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 32 H 0.05 0.60 6.48 -51.93 -0.34 0.26 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.43 6.31 -51.93 -0.33 0.10 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.04 0.43 6.40 -51.93 -0.33 0.10 16 37 H 0.06 1.28 7.51 -51.93 -0.39 0.89 16 38 H 0.09 1.76 7.54 -51.93 -0.39 1.37 16 LS Contribution 282.48 15.07 4.26 4.26 Total: -1.00 -30.08 282.48 -5.82 -35.90 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.26 Total: -1.42 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 0.86 Total: -12.49 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.18 Total: -37.86 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.36 Total: -6.51 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.08 -5.82 -35.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379581492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.311 kcal (2) G-P(sol) polarization free energy of solvation -30.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds