Wall clock time and date at job start Mon Mar 30 2020 03:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47447 * 2 1 4 4 H 1.08998 * 109.47434 * 180.22487 * 3 2 1 5 5 C 1.50697 * 109.47152 * 300.22033 * 3 2 1 6 6 H 1.08003 * 119.99863 * 119.99400 * 5 3 2 7 7 C 1.37876 * 120.00390 * 300.27861 * 5 3 2 8 8 N 1.31519 * 120.00516 * 179.72229 * 7 5 3 9 9 Si 1.86803 * 119.99841 * 359.71702 * 7 5 3 10 10 H 1.48503 * 109.46782 * 90.00154 * 9 7 5 11 11 H 1.48499 * 109.47535 * 210.00451 * 9 7 5 12 12 H 1.48503 * 109.47135 * 330.00694 * 9 7 5 13 13 N 1.46899 * 109.47245 * 60.21934 * 3 2 1 14 14 C 1.48532 * 110.99580 * 59.76616 * 13 3 2 15 15 C 1.54936 * 103.22847 * 159.72465 * 14 13 3 16 16 C 1.54600 * 102.91845 * 322.58449 * 15 14 13 17 17 C 1.53000 * 110.39318 * 140.91615 * 16 15 14 18 18 O 1.42898 * 110.30950 * 263.04475 * 16 15 14 19 19 C 1.42908 * 113.99553 * 295.71505 * 18 16 15 20 20 C 1.47891 * 111.00117 * 177.16222 * 13 3 2 21 21 H 1.08999 * 109.47069 * 185.09290 * 1 2 3 22 22 H 1.09004 * 109.46545 * 305.09247 * 1 2 3 23 23 H 1.08997 * 109.47123 * 65.08661 * 1 2 3 24 24 H 1.09008 * 109.46540 * 240.00110 * 2 1 3 25 25 H 1.08999 * 109.47487 * 120.00578 * 2 1 3 26 26 H 0.96996 * 120.00283 * 179.97438 * 8 7 5 27 27 H 1.09003 * 110.66939 * 278.15305 * 14 13 3 28 28 H 1.08999 * 110.67157 * 41.28592 * 14 13 3 29 29 H 1.08996 * 110.72593 * 204.22926 * 15 14 13 30 30 H 1.08993 * 110.87851 * 81.01078 * 15 14 13 31 31 H 1.09001 * 109.46825 * 304.23496 * 17 16 15 32 32 H 1.09000 * 109.46913 * 64.23564 * 17 16 15 33 33 H 1.09001 * 109.46896 * 184.23697 * 17 16 15 34 34 H 1.08998 * 109.47258 * 60.00093 * 19 18 16 35 35 H 1.08999 * 109.46787 * 180.02562 * 19 18 16 36 36 H 1.08999 * 109.46933 * 299.99647 * 19 18 16 37 37 H 1.08995 * 109.92049 * 333.50700 * 20 13 3 38 38 H 1.09000 * 109.91870 * 94.60892 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1301 1.4425 -0.0040 5 6 1.5333 2.1545 -1.2277 6 1 0.9128 3.0324 -1.1252 7 6 1.8571 1.6817 -2.4818 8 7 1.4103 2.2999 -3.5532 9 14 2.9304 0.1632 -2.6591 10 1 2.0720 -1.0481 -2.6962 11 1 3.7128 0.2542 -3.9180 12 1 3.8596 0.0761 -1.5040 13 7 1.5548 2.1335 1.2021 14 6 2.0309 1.4550 2.4346 15 6 1.8977 2.5542 3.5184 16 6 2.3039 3.8386 2.7598 17 6 1.4167 5.0110 3.1831 18 8 3.6784 4.1446 3.0030 19 6 3.9711 4.4602 4.3657 20 6 2.0843 3.5126 1.2707 21 1 -0.3633 -1.0236 0.0912 22 1 -0.3632 0.5908 0.8409 23 1 -0.3633 0.4329 -0.9320 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6384 1.9675 -4.4354 27 1 1.3969 0.6010 2.6731 28 1 3.0704 1.1455 2.3264 29 1 2.5797 2.3637 4.3470 30 1 0.8702 2.6256 3.8750 31 1 0.3701 4.7496 3.0266 32 1 1.5828 5.2299 4.2379 33 1 1.6652 5.8887 2.5863 34 1 3.7137 3.6111 4.9987 35 1 5.0337 4.6807 4.4673 36 1 3.3892 5.3301 4.6703 37 1 3.0308 3.5742 0.7338 38 1 1.3658 4.2083 0.8373 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379581492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:24 Heat of formation + Delta-G solvation = -56.361498 kcal Electronic energy + Delta-G solvation = -17143.340737 eV Core-core repulsion = 14599.327513 eV Total energy + Delta-G solvation = -2544.013225 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89020 -38.39794 -35.66335 -33.84874 -31.80984 -30.80004 -28.58815 -27.82920 -26.42128 -24.60987 -23.11531 -20.96628 -20.79825 -18.46505 -17.65399 -17.18638 -16.60644 -16.26117 -15.80156 -15.26308 -14.93184 -14.66407 -14.41831 -14.25432 -14.08980 -13.54918 -13.11899 -12.94132 -12.84373 -12.61140 -12.49142 -12.29695 -12.19120 -12.12684 -11.86551 -11.72249 -11.37302 -11.19037 -10.93818 -10.66904 -10.42253 -9.15020 -8.27873 -6.28296 1.26421 1.31701 1.40496 2.30390 2.75941 3.06855 3.38115 3.64851 3.74037 3.96153 4.30141 4.37300 4.38569 4.47984 4.48817 4.52995 4.60789 4.71995 4.74348 4.79944 4.89513 4.93806 4.95863 5.03307 5.09037 5.14214 5.19151 5.26475 5.32626 5.33355 5.63911 5.75349 5.99900 6.15660 6.41294 6.63359 6.75777 7.34994 8.88835 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034364 B = 0.008466 C = 0.008025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.622376 B = 3306.408867 C = 3488.044941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.120 4.120 3 C 0.182 3.818 4 H -0.021 1.021 5 C -0.490 4.490 6 H 0.040 0.960 7 C 0.017 3.983 8 N -0.946 5.946 9 Si 0.939 3.061 10 H -0.261 1.261 11 H -0.298 1.298 12 H -0.259 1.259 13 N -0.501 5.501 14 C 0.030 3.970 15 C -0.134 4.134 16 C 0.101 3.899 17 C -0.161 4.161 18 O -0.408 6.408 19 C 0.019 3.981 20 C 0.065 3.935 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.030 0.970 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.264 0.736 27 H 0.093 0.907 28 H 0.027 0.973 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.020 0.980 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 -0.354 17.554 17.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C 0.073 3.927 4 H -0.004 1.004 5 C -0.529 4.529 6 H 0.058 0.942 7 C -0.181 4.181 8 N -0.587 5.587 9 Si 0.767 3.233 10 H -0.187 1.187 11 H -0.226 1.226 12 H -0.184 1.184 13 N -0.226 5.226 14 C -0.098 4.098 15 C -0.172 4.172 16 C 0.062 3.938 17 C -0.219 4.219 18 O -0.328 6.328 19 C -0.077 4.077 20 C -0.064 4.064 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.049 0.951 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.039 0.961 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.551 -0.358 17.186 17.259 hybrid contribution 1.294 -0.379 -0.864 1.601 sum 2.845 -0.737 16.322 16.584 Atomic orbital electron populations 1.21383 0.94340 0.99944 1.01785 1.21816 0.98426 0.96292 0.99264 1.19746 0.91488 0.92284 0.89162 1.00373 1.21021 1.30366 1.11799 0.89690 0.94211 1.25643 0.97057 0.99829 0.95532 1.70019 1.47661 1.42591 0.98451 0.86000 0.79610 0.80853 0.76868 1.18714 1.22606 1.18415 1.64720 1.54882 1.01204 1.01780 1.23290 0.97995 0.98237 0.90288 1.23083 1.03473 0.93232 0.97402 1.22405 0.81929 0.95391 0.94112 1.22277 0.99997 0.97117 1.02474 1.87986 1.26100 1.89755 1.28976 1.22999 1.02236 1.00262 0.82186 1.22563 0.97535 0.92123 0.94137 0.92744 0.91621 0.95051 0.94829 0.91634 0.92650 0.88859 0.95425 0.88863 0.88449 0.90696 0.89849 0.92557 0.92582 0.88927 0.92450 0.96123 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 9.48 71.98 0.68 -4.04 16 2 C -0.12 -5.14 4.91 30.59 0.15 -4.99 16 3 C 0.18 8.78 1.04 44.17 0.05 8.83 16 4 H -0.02 -1.10 7.06 -2.39 -0.02 -1.11 16 5 C -0.49 -28.35 7.54 25.60 0.19 -28.15 16 6 H 0.04 2.56 7.67 -2.91 -0.02 2.54 16 7 C 0.02 0.98 5.45 84.65 0.46 1.44 16 8 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 9 Si 0.94 46.36 24.37 68.60 1.67 48.03 16 10 H -0.26 -12.15 6.86 99.48 0.68 -11.47 16 11 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 12 H -0.26 -12.27 6.54 99.48 0.65 -11.62 16 13 N -0.50 -20.76 4.26 -862.27 -3.67 -24.43 16 14 C 0.03 0.96 5.40 86.65 0.47 1.43 16 15 C -0.13 -3.46 6.13 31.80 0.19 -3.27 16 16 C 0.10 3.07 1.05 -9.91 -0.01 3.06 16 17 C -0.16 -3.92 8.00 71.98 0.58 -3.35 16 18 O -0.41 -12.69 10.31 -148.98 -1.54 -14.23 16 19 C 0.02 0.38 10.32 113.37 1.17 1.55 16 20 C 0.06 2.65 5.28 86.45 0.46 3.11 16 21 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 22 H 0.06 2.52 7.46 -2.39 -0.02 2.50 16 23 H 0.03 1.45 7.40 -2.39 -0.02 1.44 16 24 H 0.03 1.51 3.26 -2.38 -0.01 1.51 16 25 H 0.07 2.38 6.92 -2.39 -0.02 2.37 16 26 H 0.26 15.77 8.31 -92.71 -0.77 14.99 16 27 H 0.09 2.70 7.65 -2.39 -0.02 2.68 16 28 H 0.03 0.95 8.00 -2.39 -0.02 0.93 16 29 H 0.09 1.98 6.15 -2.39 -0.01 1.97 16 30 H 0.10 2.19 7.84 -2.39 -0.02 2.17 16 31 H 0.07 1.79 8.11 -2.39 -0.02 1.77 16 32 H 0.08 1.54 6.48 -2.39 -0.02 1.52 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 0.95 6.31 -2.39 -0.02 0.94 16 35 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.06 0.97 6.40 -2.39 -0.02 0.96 16 37 H 0.02 0.97 7.51 -2.39 -0.02 0.95 16 38 H 0.07 2.97 7.54 -2.39 -0.02 2.95 16 Total: -1.00 -67.91 282.48 2.09 -65.82 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.94 Total: 8.86 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 4.39 Total: -24.38 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -3.37 Total: -84.10 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.54 Total: -14.23 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.67 Total: 48.03 kcal Total: -67.91 2.09 -65.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379581492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.459 kcal (2) G-P(sol) polarization free energy of solvation -67.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds