Wall clock time and date at job start Mon Mar 30 2020 03:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47179 * 2 1 4 4 H 1.09005 * 109.46830 * 305.69329 * 3 2 1 5 5 N 1.46893 * 109.47360 * 185.69471 * 3 2 1 6 6 C 1.46906 * 111.00185 * 84.85092 * 5 3 2 7 7 H 1.08998 * 109.47158 * 325.16315 * 6 5 3 8 8 C 1.52999 * 109.46808 * 85.15840 * 6 5 3 9 9 C 1.50695 * 109.47439 * 205.16228 * 6 5 3 10 10 H 1.08006 * 120.00176 * 359.97438 * 9 6 5 11 11 C 1.37873 * 120.00381 * 180.02562 * 9 6 5 12 12 N 1.31515 * 119.99838 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 120.00308 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47156 * 59.99743 * 13 11 9 15 15 H 1.48507 * 109.47223 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47071 * 299.99994 * 13 11 9 17 17 C 1.53006 * 109.47283 * 65.69148 * 3 2 1 18 18 H 1.08991 * 110.43579 * 305.70094 * 17 3 2 19 19 C 1.54811 * 110.48774 * 183.15730 * 17 3 2 20 20 C 1.55220 * 101.98543 * 220.52286 * 19 17 3 21 21 O 1.44380 * 103.56825 * 36.88010 * 20 19 17 22 22 C 1.43746 * 106.97549 * 320.01103 * 21 20 19 23 23 H 1.08998 * 109.47009 * 293.75127 * 1 2 3 24 24 H 1.08991 * 109.47175 * 53.75962 * 1 2 3 25 25 H 1.09001 * 109.46912 * 173.75970 * 1 2 3 26 26 H 1.09005 * 109.46917 * 119.99913 * 2 1 3 27 27 H 1.08999 * 109.47106 * 239.99740 * 2 1 3 28 28 H 1.00893 * 111.00488 * 208.80687 * 5 3 2 29 29 H 1.09006 * 109.46978 * 179.97438 * 8 6 5 30 30 H 1.08995 * 109.47623 * 299.99783 * 8 6 5 31 31 H 1.09001 * 109.47222 * 60.00967 * 8 6 5 32 32 H 0.96997 * 120.00377 * 179.97438 * 12 11 9 33 33 H 1.09002 * 110.90548 * 338.64486 * 19 17 3 34 34 H 1.08995 * 110.90992 * 102.24461 * 19 17 3 35 35 H 1.09003 * 110.51800 * 278.37911 * 20 19 17 36 36 H 1.09008 * 110.78023 * 155.50066 * 20 19 17 37 37 H 1.08996 * 109.87507 * 267.08953 * 22 21 20 38 38 H 1.08998 * 110.00015 * 146.00605 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5958 1.9848 -0.8347 5 7 3.5025 1.4447 -0.1374 6 6 3.8987 1.3677 -1.5499 7 1 3.1886 0.7442 -2.0930 8 6 3.9092 2.7734 -2.1540 9 6 5.2766 0.7664 -1.6531 10 1 5.8055 0.4712 -0.7588 11 6 5.8628 0.5938 -2.8891 12 7 5.2191 0.9536 -3.9781 13 14 7.5711 -0.1510 -3.0170 14 1 7.5614 -1.5154 -2.4309 15 1 7.9715 -0.2289 -4.4449 16 1 8.5382 0.6987 -2.2768 17 6 1.6502 2.1212 1.3146 18 1 0.5762 2.0395 1.4813 19 6 2.0859 3.6068 1.3074 20 6 2.6118 3.7955 2.7556 21 8 3.2557 2.5369 3.0488 22 6 2.4275 1.5021 2.4924 23 1 -0.3633 0.4139 0.9406 24 1 -0.3633 0.6075 -0.8288 25 1 -0.3633 -1.0216 -0.1117 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.9063 2.2552 0.3077 29 1 4.2036 2.7163 -3.2020 30 1 2.9125 3.2083 -2.0794 31 1 4.6194 3.3970 -1.6110 32 1 5.6316 0.8326 -4.8476 33 1 2.8802 3.7756 0.5803 34 1 1.2360 4.2605 1.1117 35 1 1.7843 3.9726 3.4426 36 1 3.3300 4.6141 2.8026 37 1 1.7297 1.1399 3.2474 38 1 3.0475 0.6796 2.1359 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379599079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:52 Heat of formation + Delta-G solvation = -58.954116 kcal Electronic energy + Delta-G solvation = -16915.239087 eV Core-core repulsion = 14371.113438 eV Total energy + Delta-G solvation = -2544.125649 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.60450 -36.54211 -33.90432 -31.65356 -31.27232 -29.00758 -27.54144 -25.13004 -24.20932 -22.93633 -21.45015 -20.33754 -18.73637 -16.63233 -16.15334 -15.71061 -14.81084 -14.64460 -14.41052 -13.96045 -13.80624 -13.10503 -12.54335 -12.32568 -12.23606 -11.74463 -11.56368 -11.35024 -11.19455 -11.03057 -10.87613 -10.85099 -10.65857 -10.42261 -10.22572 -10.11290 -9.97243 -9.64490 -9.34390 -8.92176 -8.30815 -7.14926 -5.93920 -3.96465 3.37861 3.41211 3.45349 4.19419 4.48229 4.73816 4.94677 5.05137 5.27690 5.34438 5.37791 5.41605 5.56145 5.58314 5.74962 5.84918 5.85049 5.94771 6.03114 6.17983 6.21064 6.33547 6.40275 6.46171 6.68783 6.72223 6.84649 6.87626 7.13761 7.16643 7.43854 7.78354 7.95037 8.34252 8.62687 8.69950 9.11255 9.68774 11.13140 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028235 B = 0.007803 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.439377 B = 3587.447841 C = 3924.318349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C 0.096 3.904 4 H 0.037 0.963 5 N -0.679 5.679 6 C 0.212 3.788 7 H 0.034 0.966 8 C -0.169 4.169 9 C -0.492 4.492 10 H 0.062 0.938 11 C 0.054 3.946 12 N -0.899 5.899 13 Si 0.896 3.104 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.278 1.278 17 C -0.124 4.124 18 H 0.080 0.920 19 C -0.157 4.157 20 C 0.047 3.953 21 O -0.375 6.375 22 C 0.055 3.945 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.330 0.670 29 H 0.088 0.912 30 H 0.003 0.997 31 H 0.026 0.974 32 H 0.259 0.741 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.088 0.912 37 H 0.045 0.955 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.903 3.372 9.322 13.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.015 4.015 4 H 0.055 0.945 5 N -0.311 5.311 6 C 0.104 3.896 7 H 0.052 0.948 8 C -0.228 4.228 9 C -0.531 4.531 10 H 0.080 0.920 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.216 1.216 16 H -0.204 1.204 17 C -0.143 4.143 18 H 0.098 0.902 19 C -0.195 4.195 20 C -0.030 4.030 21 O -0.294 6.294 22 C -0.021 4.021 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.149 0.851 29 H 0.107 0.893 30 H 0.022 0.978 31 H 0.045 0.955 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.106 0.894 37 H 0.063 0.937 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.609 2.654 9.341 12.977 hybrid contribution 0.401 0.636 -0.702 1.029 sum -8.207 3.291 8.639 12.362 Atomic orbital electron populations 1.21821 0.96978 1.01055 1.00983 1.21543 0.93705 0.96948 1.02932 1.21399 0.91396 0.94866 0.93798 0.94487 1.60838 1.04913 1.46531 1.18815 1.19177 0.96269 0.92116 0.82000 0.94832 1.22441 0.95826 0.99073 1.05465 1.21138 1.00493 1.39067 0.92366 0.92019 1.24943 0.97833 0.95974 0.95828 1.69873 1.37805 1.48568 0.97690 0.86588 0.84571 0.79782 0.76580 1.20341 1.21553 1.20412 1.22791 1.00163 0.94460 0.96879 0.90151 1.23304 1.01747 0.96369 0.98046 1.23513 0.96925 0.88016 0.94507 1.88883 1.47188 1.15016 1.78331 1.23246 0.93923 0.92097 0.92874 0.93316 0.93130 0.93136 0.91873 0.91182 0.85134 0.89326 0.97801 0.95501 0.93123 0.89956 0.90752 0.92939 0.89400 0.93719 0.87653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.55 37.16 0.35 -1.62 16 2 C -0.11 -1.85 5.52 -26.73 -0.15 -2.00 16 3 C 0.10 1.66 1.54 -67.72 -0.10 1.55 16 4 H 0.04 0.69 7.12 -51.93 -0.37 0.32 16 5 N -0.68 -14.19 5.07 -100.96 -0.51 -14.71 16 6 C 0.21 5.29 2.37 -68.86 -0.16 5.13 16 7 H 0.03 0.92 7.09 -51.93 -0.37 0.55 16 8 C -0.17 -4.07 8.92 37.16 0.33 -3.74 16 9 C -0.49 -13.69 8.84 -34.44 -0.30 -14.00 16 10 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 11 C 0.05 1.52 5.30 -17.82 -0.09 1.43 16 12 N -0.90 -25.89 11.32 55.43 0.63 -25.27 16 13 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 C -0.12 -1.76 2.71 -89.09 -0.24 -2.00 16 18 H 0.08 1.00 6.55 -51.93 -0.34 0.66 16 19 C -0.16 -2.11 6.33 -24.60 -0.16 -2.27 16 20 C 0.05 0.61 7.72 38.33 0.30 0.90 16 21 O -0.38 -6.05 11.52 -35.23 -0.41 -6.46 16 22 C 0.06 0.82 6.39 37.73 0.24 1.06 16 23 H 0.05 0.56 6.79 -51.93 -0.35 0.21 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.01 6.87 -51.93 -0.36 0.65 16 27 H 0.07 1.33 7.36 -51.93 -0.38 0.95 16 28 H 0.33 6.85 6.14 -39.30 -0.24 6.61 16 29 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 30 H 0.00 0.07 7.44 -51.93 -0.39 -0.32 16 31 H 0.03 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 33 H 0.08 1.28 6.48 -51.93 -0.34 0.94 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.02 8.14 -51.92 -0.42 0.60 16 37 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 1.77 6.33 -51.93 -0.33 1.44 16 LS Contribution 291.29 15.07 4.39 4.39 Total: -1.00 -28.62 291.29 -7.19 -35.81 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.28 Total: 4.98 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 0.01 Total: -15.54 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.12 Total: -39.97 kcal Atomic # 8 Polarization: -6.05 SS G_CDS: -0.41 Total: -6.46 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.62 -7.19 -35.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379599079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.144 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds