Wall clock time and date at job start Mon Mar 30 2020 03:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47179 * 2 1 4 4 H 1.09005 * 109.46830 * 305.69329 * 3 2 1 5 5 N 1.46893 * 109.47360 * 185.69471 * 3 2 1 6 6 C 1.46906 * 111.00185 * 84.85092 * 5 3 2 7 7 H 1.08998 * 109.47158 * 325.16315 * 6 5 3 8 8 C 1.52999 * 109.46808 * 85.15840 * 6 5 3 9 9 C 1.50695 * 109.47439 * 205.16228 * 6 5 3 10 10 H 1.08006 * 120.00176 * 359.97438 * 9 6 5 11 11 C 1.37873 * 120.00381 * 180.02562 * 9 6 5 12 12 N 1.31515 * 119.99838 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 120.00308 * 179.97438 * 11 9 6 14 14 H 1.48497 * 109.47156 * 59.99743 * 13 11 9 15 15 H 1.48507 * 109.47223 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.47071 * 299.99994 * 13 11 9 17 17 C 1.53006 * 109.47283 * 65.69148 * 3 2 1 18 18 H 1.08991 * 110.43579 * 305.70094 * 17 3 2 19 19 C 1.54811 * 110.48774 * 183.15730 * 17 3 2 20 20 C 1.55220 * 101.98543 * 220.52286 * 19 17 3 21 21 O 1.44380 * 103.56825 * 36.88010 * 20 19 17 22 22 C 1.43746 * 106.97549 * 320.01103 * 21 20 19 23 23 H 1.08998 * 109.47009 * 293.75127 * 1 2 3 24 24 H 1.08991 * 109.47175 * 53.75962 * 1 2 3 25 25 H 1.09001 * 109.46912 * 173.75970 * 1 2 3 26 26 H 1.09005 * 109.46917 * 119.99913 * 2 1 3 27 27 H 1.08999 * 109.47106 * 239.99740 * 2 1 3 28 28 H 1.00893 * 111.00488 * 208.80687 * 5 3 2 29 29 H 1.09006 * 109.46978 * 179.97438 * 8 6 5 30 30 H 1.08995 * 109.47623 * 299.99783 * 8 6 5 31 31 H 1.09001 * 109.47222 * 60.00967 * 8 6 5 32 32 H 0.96997 * 120.00377 * 179.97438 * 12 11 9 33 33 H 1.09002 * 110.90548 * 338.64486 * 19 17 3 34 34 H 1.08995 * 110.90992 * 102.24461 * 19 17 3 35 35 H 1.09003 * 110.51800 * 278.37911 * 20 19 17 36 36 H 1.09008 * 110.78023 * 155.50066 * 20 19 17 37 37 H 1.08996 * 109.87507 * 267.08953 * 22 21 20 38 38 H 1.08998 * 110.00015 * 146.00605 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5958 1.9848 -0.8347 5 7 3.5025 1.4447 -0.1374 6 6 3.8987 1.3677 -1.5499 7 1 3.1886 0.7442 -2.0930 8 6 3.9092 2.7734 -2.1540 9 6 5.2766 0.7664 -1.6531 10 1 5.8055 0.4712 -0.7588 11 6 5.8628 0.5938 -2.8891 12 7 5.2191 0.9536 -3.9781 13 14 7.5711 -0.1510 -3.0170 14 1 7.5614 -1.5154 -2.4309 15 1 7.9715 -0.2289 -4.4449 16 1 8.5382 0.6987 -2.2768 17 6 1.6502 2.1212 1.3146 18 1 0.5762 2.0395 1.4813 19 6 2.0859 3.6068 1.3074 20 6 2.6118 3.7955 2.7556 21 8 3.2557 2.5369 3.0488 22 6 2.4275 1.5021 2.4924 23 1 -0.3633 0.4139 0.9406 24 1 -0.3633 0.6075 -0.8288 25 1 -0.3633 -1.0216 -0.1117 26 1 1.8934 -0.5138 0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 3.9063 2.2552 0.3077 29 1 4.2036 2.7163 -3.2020 30 1 2.9125 3.2083 -2.0794 31 1 4.6194 3.3970 -1.6110 32 1 5.6316 0.8326 -4.8476 33 1 2.8802 3.7756 0.5803 34 1 1.2360 4.2605 1.1117 35 1 1.7843 3.9726 3.4426 36 1 3.3300 4.6141 2.8026 37 1 1.7297 1.1399 3.2474 38 1 3.0475 0.6796 2.1359 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379599079.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:52 Heat of formation + Delta-G solvation = -77.483836 kcal Electronic energy + Delta-G solvation = -16916.042596 eV Core-core repulsion = 14371.113438 eV Total energy + Delta-G solvation = -2544.929158 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.82009 -38.04900 -35.67515 -33.46118 -32.50482 -30.26907 -29.13880 -27.24227 -25.61347 -24.07892 -22.62920 -22.19064 -20.10674 -18.44899 -17.47933 -17.07521 -16.61262 -16.06630 -15.83159 -15.31620 -15.11232 -14.70425 -14.14520 -13.79917 -13.58179 -13.52425 -12.89085 -12.85448 -12.74396 -12.62140 -12.45286 -12.29049 -12.15885 -12.03497 -11.88397 -11.59800 -11.53993 -11.10499 -10.95913 -10.46977 -10.46474 -8.87297 -8.08732 -6.19107 1.41993 1.43625 1.51426 2.44132 3.11920 3.19327 3.56805 3.70156 3.77555 4.11158 4.21922 4.33343 4.39499 4.44914 4.59768 4.67032 4.74877 4.80268 4.85290 4.87696 4.89931 4.96011 5.05722 5.13436 5.17498 5.22470 5.29495 5.39252 5.45169 5.55622 5.70734 5.85585 6.06834 6.31195 6.70922 6.90073 6.98485 7.50863 8.96512 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028235 B = 0.007803 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.439377 B = 3587.447841 C = 3924.318349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C 0.096 3.904 4 H 0.024 0.976 5 N -0.681 5.681 6 C 0.219 3.781 7 H 0.003 0.997 8 C -0.154 4.154 9 C -0.513 4.513 10 H 0.051 0.949 11 C 0.009 3.991 12 N -0.923 5.923 13 Si 0.958 3.042 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.273 1.273 17 C -0.115 4.115 18 H 0.110 0.890 19 C -0.156 4.156 20 C 0.046 3.954 21 O -0.403 6.403 22 C 0.056 3.944 23 H 0.073 0.927 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.330 0.670 29 H 0.060 0.940 30 H 0.023 0.977 31 H 0.027 0.973 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.902 3.889 10.747 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.149 4.149 3 C -0.014 4.014 4 H 0.042 0.958 5 N -0.312 5.312 6 C 0.111 3.889 7 H 0.020 0.980 8 C -0.213 4.213 9 C -0.551 4.551 10 H 0.069 0.931 11 C -0.189 4.189 12 N -0.563 5.563 13 Si 0.784 3.216 14 H -0.200 1.200 15 H -0.209 1.209 16 H -0.198 1.198 17 C -0.134 4.134 18 H 0.128 0.872 19 C -0.194 4.194 20 C -0.030 4.030 21 O -0.323 6.323 22 C -0.020 4.020 23 H 0.092 0.908 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.149 0.851 29 H 0.079 0.921 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.088 0.912 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.618 3.175 10.778 14.791 hybrid contribution 0.685 0.481 -1.126 1.402 sum -8.934 3.656 9.653 13.651 Atomic orbital electron populations 1.21756 0.93911 1.02067 1.02250 1.21506 0.96353 0.95909 1.01153 1.21471 0.88804 0.95753 0.95399 0.95826 1.60718 1.07683 1.46679 1.16148 1.18893 0.94305 0.91699 0.84030 0.97958 1.22228 0.96903 0.98788 1.03417 1.21431 1.01870 1.39659 0.92178 0.93115 1.25690 1.01408 0.96322 0.95513 1.69998 1.39182 1.49135 0.98000 0.85622 0.80271 0.78989 0.76765 1.20013 1.20891 1.19832 1.22755 1.01672 0.94538 0.94454 0.87198 1.23299 1.01904 0.96219 0.97961 1.23705 0.97912 0.86951 0.94412 1.88853 1.48467 1.16416 1.78546 1.23208 0.93770 0.91340 0.93696 0.90804 0.93299 0.92054 0.91612 0.95008 0.85088 0.92080 0.95761 0.95398 0.93078 0.92554 0.88168 0.90216 0.88578 0.91187 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.55 71.98 0.69 -2.73 16 2 C -0.11 -3.61 5.52 30.59 0.17 -3.44 16 3 C 0.10 3.27 1.54 44.92 0.07 3.34 16 4 H 0.02 0.88 7.12 -2.38 -0.02 0.86 16 5 N -0.68 -28.99 5.07 -473.32 -2.40 -31.39 16 6 C 0.22 11.30 2.37 44.17 0.10 11.40 16 7 H 0.00 0.14 7.09 -2.39 -0.02 0.13 16 8 C -0.15 -7.56 8.92 71.98 0.64 -6.92 16 9 C -0.51 -29.27 8.84 25.60 0.23 -29.04 16 10 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 11 C 0.01 0.49 5.30 84.65 0.45 0.93 16 12 N -0.92 -54.17 11.32 21.45 0.24 -53.93 16 13 Si 0.96 45.16 29.54 68.60 2.03 47.19 16 14 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 17 C -0.12 -3.01 2.71 -9.80 -0.03 -3.03 16 18 H 0.11 2.27 6.55 -2.39 -0.02 2.25 16 19 C -0.16 -3.82 6.33 31.97 0.20 -3.62 16 20 C 0.05 1.06 7.72 72.74 0.56 1.62 16 21 O -0.40 -12.31 11.52 -148.98 -1.72 -14.03 16 22 C 0.06 1.57 6.39 72.35 0.46 2.03 16 23 H 0.07 1.42 6.79 -2.39 -0.02 1.40 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 26 H 0.07 2.07 6.87 -2.38 -0.02 2.06 16 27 H 0.03 1.25 7.36 -2.39 -0.02 1.23 16 28 H 0.33 13.89 6.14 -89.70 -0.55 13.34 16 29 H 0.06 3.35 6.07 -2.38 -0.01 3.33 16 30 H 0.02 1.04 7.44 -2.39 -0.02 1.02 16 31 H 0.03 1.31 8.13 -2.39 -0.02 1.29 16 32 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 33 H 0.06 1.68 6.48 -2.39 -0.02 1.67 16 34 H 0.10 1.93 8.14 -2.39 -0.02 1.92 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 2.60 6.33 -2.39 -0.02 2.59 16 Total: -1.00 -62.69 291.29 2.18 -60.52 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: 0.48 Total: 21.09 kcal Atomic # 6 Polarization: -33.00 SS G_CDS: 3.55 Total: -29.45 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -2.16 Total: -85.32 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: -1.72 Total: -14.03 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -62.69 2.18 -60.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379599079.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.966 kcal (2) G-P(sol) polarization free energy of solvation -62.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds