Wall clock time and date at job start Mon Mar 30 2020 03:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46856 * 2 1 4 4 H 1.09001 * 109.47355 * 305.65114 * 3 2 1 5 5 C 1.50708 * 109.46664 * 185.65558 * 3 2 1 6 6 H 1.08000 * 119.99377 * 239.99665 * 5 3 2 7 7 C 1.37872 * 120.00082 * 60.00229 * 5 3 2 8 8 N 1.31506 * 120.00242 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99927 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47212 * 59.99335 * 9 7 5 11 11 H 1.48492 * 109.47252 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46674 * 299.99814 * 9 7 5 13 13 N 1.46893 * 109.47631 * 65.65606 * 3 2 1 14 14 C 1.46902 * 111.00476 * 205.47138 * 13 3 2 15 15 C 1.52998 * 109.47465 * 185.21017 * 14 13 3 16 16 C 1.53004 * 109.46741 * 60.00108 * 15 14 13 17 17 O 1.42898 * 109.46872 * 300.00015 * 15 14 13 18 18 C 1.52997 * 109.47223 * 179.97438 * 15 14 13 19 19 C 1.53002 * 117.49806 * 253.75062 * 18 15 14 20 20 C 1.52999 * 117.50153 * 185.09027 * 18 15 14 21 21 H 1.09000 * 109.47442 * 295.53230 * 1 2 3 22 22 H 1.09003 * 109.47147 * 55.53586 * 1 2 3 23 23 H 1.08997 * 109.47309 * 175.52719 * 1 2 3 24 24 H 1.08999 * 109.47202 * 239.99528 * 2 1 3 25 25 H 1.08998 * 109.47024 * 119.99539 * 2 1 3 26 26 H 0.97002 * 120.00247 * 179.97438 * 8 7 5 27 27 H 1.00912 * 110.99713 * 329.42344 * 13 3 2 28 28 H 1.08999 * 109.47157 * 65.20822 * 14 13 3 29 29 H 1.09002 * 109.46530 * 305.21514 * 14 13 3 30 30 H 1.09003 * 109.46489 * 180.02562 * 16 15 14 31 31 H 1.09007 * 109.47090 * 299.99441 * 16 15 14 32 32 H 1.08996 * 109.47629 * 59.99783 * 16 15 14 33 33 H 0.96697 * 114.00207 * 299.99161 * 17 15 14 34 34 H 1.09004 * 115.54807 * 39.41429 * 18 15 14 35 35 H 1.09002 * 117.49963 * 359.97438 * 19 18 15 36 36 H 1.09004 * 117.49822 * 145.01885 * 19 18 15 37 37 H 1.08999 * 117.49984 * 214.98262 * 20 18 15 38 38 H 1.09001 * 117.49558 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5963 1.9848 -0.8351 5 6 3.5405 1.4448 -0.1400 6 1 4.1541 1.8865 0.6312 7 6 4.1299 0.8831 -1.2527 8 7 3.3828 0.3450 -2.1916 9 14 5.9899 0.8853 -1.4259 10 1 6.5939 0.1462 -0.2882 11 1 6.3691 0.2259 -2.7012 12 1 6.4853 2.2853 -1.4255 13 7 1.6650 2.0945 1.2617 14 6 1.5734 3.5512 1.0948 15 6 1.3097 4.2046 2.4529 16 6 2.4562 3.8721 3.4099 17 8 0.0819 3.7086 2.9897 18 6 1.2150 5.7218 2.2791 19 6 2.3936 6.5642 2.7712 20 6 1.0724 6.5703 3.5442 21 1 -0.3634 0.4429 0.9273 22 1 -0.3633 0.5816 -0.8473 23 1 -0.3634 -1.0245 -0.0801 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.7974 -0.0498 -2.9747 27 1 0.8010 1.7167 1.6212 28 1 0.7567 3.7881 0.4129 29 1 2.5100 3.9294 0.6852 30 1 2.2681 4.3373 4.3776 31 1 2.5241 2.7912 3.5339 32 1 3.3928 4.2503 3.0004 33 1 -0.6898 3.8842 2.4341 34 1 0.6931 6.0607 1.3841 35 1 3.2363 6.0376 3.2192 36 1 2.6468 7.4576 2.2003 37 1 0.4568 7.4677 3.4816 38 1 1.0456 6.0476 4.5003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379608327.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:12 Heat of formation + Delta-G solvation = -35.414829 kcal Electronic energy + Delta-G solvation = -16623.084295 eV Core-core repulsion = 14079.979386 eV Total energy + Delta-G solvation = -2543.104909 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.08902 -36.17833 -35.09379 -32.42731 -31.31882 -29.38921 -26.75152 -25.33211 -23.03938 -22.34437 -21.62446 -19.67229 -19.16294 -16.58724 -16.24378 -15.75449 -14.83150 -14.67476 -14.19572 -13.85888 -13.37301 -12.88287 -12.50828 -12.15190 -12.12633 -12.01297 -11.51971 -11.16685 -11.03598 -11.00177 -10.83382 -10.63862 -10.53568 -10.32563 -10.09742 -9.94596 -9.91917 -9.61533 -9.15214 -9.04080 -8.31423 -7.13454 -5.93844 -3.97914 3.35197 3.39385 3.42774 3.81332 4.46211 4.63803 4.71191 5.01909 5.12913 5.28507 5.34169 5.50088 5.54730 5.69868 5.89629 5.92645 6.13754 6.17399 6.19904 6.20624 6.26523 6.32762 6.44766 6.48190 6.58481 6.83539 6.88822 7.11586 7.23739 7.53476 7.82378 7.95483 7.97984 8.35985 8.44764 8.83951 9.09997 9.66970 11.11472 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.007906 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.795181 B = 3540.716277 C = 4313.512673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.219 3.781 4 H -0.001 1.001 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.894 3.106 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.679 5.679 14 C 0.050 3.950 15 C 0.163 3.837 16 C -0.128 4.128 17 O -0.555 6.555 18 C -0.183 4.183 19 C -0.177 4.177 20 C -0.170 4.170 21 H 0.036 0.964 22 H 0.040 0.960 23 H 0.036 0.964 24 H 0.098 0.902 25 H 0.041 0.959 26 H 0.259 0.741 27 H 0.322 0.678 28 H 0.012 0.988 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.367 0.633 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.066 8.519 7.434 12.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.016 0.984 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.310 5.310 14 C -0.081 4.081 15 C 0.122 3.878 16 C -0.185 4.185 17 O -0.360 6.360 18 C -0.202 4.202 19 C -0.213 4.213 20 C -0.207 4.207 21 H 0.055 0.945 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.117 0.883 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.140 0.860 28 H 0.030 0.970 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.213 0.787 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.985 8.234 7.965 12.129 hybrid contribution -0.239 0.332 -1.342 1.403 sum -4.224 8.566 6.623 11.623 Atomic orbital electron populations 1.21878 0.99641 0.99633 0.99567 1.21758 0.91221 1.00396 1.03002 1.19145 0.95378 0.89968 0.84375 0.98370 1.21189 0.91347 1.36410 1.04116 0.92140 1.24959 0.98013 0.95710 0.95902 1.69862 1.34723 1.39586 1.09588 0.86625 0.85904 0.78099 0.77121 1.20314 1.21491 1.20468 1.60560 1.36791 1.01396 1.32300 1.22383 1.00670 0.91366 0.93639 1.20789 0.85019 0.87799 0.94146 1.21678 0.95759 1.03945 0.97079 1.86548 1.16872 1.81682 1.50896 1.23052 1.03994 0.94736 0.98412 1.23101 0.92589 1.01762 1.03892 1.22845 1.00278 1.01345 0.96241 0.94468 0.94038 0.94444 0.88335 0.94051 0.93081 0.86035 0.97025 0.90087 0.93586 0.90169 0.91354 0.78689 0.88191 0.87836 0.89160 0.89403 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.67 37.16 0.36 -2.59 16 2 C -0.13 -2.99 5.36 -26.73 -0.14 -3.13 16 3 C 0.22 5.46 2.02 -68.86 -0.14 5.32 16 4 H 0.00 -0.04 7.85 -51.93 -0.41 -0.44 16 5 C -0.49 -13.59 8.56 -34.44 -0.29 -13.88 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -25.68 11.29 55.43 0.63 -25.05 16 9 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.68 -14.40 5.50 -107.95 -0.59 -14.99 16 14 C 0.05 0.93 4.60 -3.82 -0.02 0.92 16 15 C 0.16 2.52 0.99 -90.62 -0.09 2.43 16 16 C -0.13 -2.02 7.34 37.16 0.27 -1.75 16 17 O -0.56 -8.38 12.39 -35.23 -0.44 -8.82 16 18 C -0.18 -2.42 5.32 -90.62 -0.48 -2.90 16 19 C -0.18 -2.13 9.66 -26.69 -0.26 -2.39 16 20 C -0.17 -1.97 9.86 -26.69 -0.26 -2.23 16 21 H 0.04 0.66 6.61 -51.93 -0.34 0.32 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.10 2.64 5.94 -51.93 -0.31 2.33 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.32 6.46 6.10 -39.29 -0.24 6.22 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.08 1.68 7.93 -51.93 -0.41 1.27 16 30 H 0.05 0.65 6.96 -51.93 -0.36 0.29 16 31 H 0.08 1.44 7.60 -51.92 -0.39 1.05 16 32 H 0.07 1.06 6.74 -51.93 -0.35 0.71 16 33 H 0.37 4.39 9.05 45.56 0.41 4.80 16 34 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.10 1.26 5.89 -51.93 -0.31 0.96 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.15 7.28 -51.93 -0.38 0.77 16 LS Contribution 299.76 15.07 4.52 4.52 Total: -1.00 -28.75 299.76 -7.65 -36.40 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -5.59 Total: 10.17 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: -1.15 Total: -18.79 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.03 Total: -40.04 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: -0.44 Total: -8.82 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.75 -7.65 -36.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379608327.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.984 kcal (2) G-P(sol) polarization free energy of solvation -28.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds