Wall clock time and date at job start Mon Mar 30 2020 03:51:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53000 * 109.46856 * 2 1
4 4 H 1.09001 * 109.47355 * 305.65114 * 3 2 1
5 5 C 1.50708 * 109.46664 * 185.65558 * 3 2 1
6 6 H 1.08000 * 119.99377 * 239.99665 * 5 3 2
7 7 C 1.37872 * 120.00082 * 60.00229 * 5 3 2
8 8 N 1.31506 * 120.00242 * 359.97438 * 7 5 3
9 9 Si 1.86807 * 119.99927 * 180.02562 * 7 5 3
10 10 H 1.48503 * 109.47212 * 59.99335 * 9 7 5
11 11 H 1.48492 * 109.47252 * 179.97438 * 9 7 5
12 12 H 1.48502 * 109.46674 * 299.99814 * 9 7 5
13 13 N 1.46893 * 109.47631 * 65.65606 * 3 2 1
14 14 C 1.46902 * 111.00476 * 205.47138 * 13 3 2
15 15 C 1.52998 * 109.47465 * 185.21017 * 14 13 3
16 16 C 1.53004 * 109.46741 * 60.00108 * 15 14 13
17 17 O 1.42898 * 109.46872 * 300.00015 * 15 14 13
18 18 C 1.52997 * 109.47223 * 179.97438 * 15 14 13
19 19 C 1.53002 * 117.49806 * 253.75062 * 18 15 14
20 20 C 1.52999 * 117.50153 * 185.09027 * 18 15 14
21 21 H 1.09000 * 109.47442 * 295.53230 * 1 2 3
22 22 H 1.09003 * 109.47147 * 55.53586 * 1 2 3
23 23 H 1.08997 * 109.47309 * 175.52719 * 1 2 3
24 24 H 1.08999 * 109.47202 * 239.99528 * 2 1 3
25 25 H 1.08998 * 109.47024 * 119.99539 * 2 1 3
26 26 H 0.97002 * 120.00247 * 179.97438 * 8 7 5
27 27 H 1.00912 * 110.99713 * 329.42344 * 13 3 2
28 28 H 1.08999 * 109.47157 * 65.20822 * 14 13 3
29 29 H 1.09002 * 109.46530 * 305.21514 * 14 13 3
30 30 H 1.09003 * 109.46489 * 180.02562 * 16 15 14
31 31 H 1.09007 * 109.47090 * 299.99441 * 16 15 14
32 32 H 1.08996 * 109.47629 * 59.99783 * 16 15 14
33 33 H 0.96697 * 114.00207 * 299.99161 * 17 15 14
34 34 H 1.09004 * 115.54807 * 39.41429 * 18 15 14
35 35 H 1.09002 * 117.49963 * 359.97438 * 19 18 15
36 36 H 1.09004 * 117.49822 * 145.01885 * 19 18 15
37 37 H 1.08999 * 117.49984 * 214.98262 * 20 18 15
38 38 H 1.09001 * 117.49558 * 359.97438 * 20 18 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.5963 1.9848 -0.8351
5 6 3.5405 1.4448 -0.1400
6 1 4.1541 1.8865 0.6312
7 6 4.1299 0.8831 -1.2527
8 7 3.3828 0.3450 -2.1916
9 14 5.9899 0.8853 -1.4259
10 1 6.5939 0.1462 -0.2882
11 1 6.3691 0.2259 -2.7012
12 1 6.4853 2.2853 -1.4255
13 7 1.6650 2.0945 1.2617
14 6 1.5734 3.5512 1.0948
15 6 1.3097 4.2046 2.4529
16 6 2.4562 3.8721 3.4099
17 8 0.0819 3.7086 2.9897
18 6 1.2150 5.7218 2.2791
19 6 2.3936 6.5642 2.7712
20 6 1.0724 6.5703 3.5442
21 1 -0.3634 0.4429 0.9273
22 1 -0.3633 0.5816 -0.8473
23 1 -0.3634 -1.0245 -0.0801
24 1 1.8934 -0.5139 -0.8899
25 1 1.8933 -0.5138 0.8900
26 1 3.7974 -0.0498 -2.9747
27 1 0.8010 1.7167 1.6212
28 1 0.7567 3.7881 0.4129
29 1 2.5100 3.9294 0.6852
30 1 2.2681 4.3373 4.3776
31 1 2.5241 2.7912 3.5339
32 1 3.3928 4.2503 3.0004
33 1 -0.6898 3.8842 2.4341
34 1 0.6931 6.0607 1.3841
35 1 3.2363 6.0376 3.2192
36 1 2.6468 7.4576 2.2003
37 1 0.4568 7.4677 3.4816
38 1 1.0456 6.0476 4.5003
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000379608327.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:51:11
Heat of formation + Delta-G solvation = -54.998443 kcal
Electronic energy + Delta-G solvation = -16623.933505 eV
Core-core repulsion = 14079.979386 eV
Total energy + Delta-G solvation = -2543.954118 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 227.163 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.29551 -37.86439 -36.32015 -34.33304 -33.03996 -30.82350 -28.61359 -26.86906
-24.78146 -23.41139 -22.93440 -21.49636 -20.45944 -18.37361 -17.70684 -17.09498
-16.67637 -16.10355 -15.73094 -15.47032 -14.80255 -14.53626 -13.89261 -13.81904
-13.62621 -13.26350 -13.09505 -12.91964 -12.75849 -12.59070 -12.47703 -12.04160
-11.97037 -11.85448 -11.62183 -11.51094 -11.36854 -11.04349 -11.00591 -10.54006
-10.41266 -8.93565 -8.06062 -6.18194 1.41265 1.42932 1.50525 2.43894
2.81689 3.18467 3.42712 3.59617 3.95592 4.05150 4.05443 4.20608
4.26927 4.48953 4.55860 4.57183 4.69984 4.78364 4.87921 4.90178
4.99249 5.03425 5.10469 5.16414 5.24695 5.29797 5.31921 5.38061
5.54044 5.59571 5.75177 5.90370 6.37264 6.52435 6.91107 6.95704
7.05206 7.50950 8.96927
Molecular weight = 227.16amu
Principal moments of inertia in cm(-1)
A = 0.025949 B = 0.007906 C = 0.006490
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1078.795181 B = 3540.716277 C = 4313.512673
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.121 4.121
3 C 0.225 3.775
4 H -0.034 1.034
5 C -0.511 4.511
6 H 0.050 0.950
7 C 0.009 3.991
8 N -0.921 5.921
9 Si 0.954 3.046
10 H -0.274 1.274
11 H -0.284 1.284
12 H -0.273 1.273
13 N -0.677 5.677
14 C 0.052 3.948
15 C 0.174 3.826
16 C -0.125 4.125
17 O -0.562 6.562
18 C -0.197 4.197
19 C -0.179 4.179
20 C -0.152 4.152
21 H 0.057 0.943
22 H 0.036 0.964
23 H 0.057 0.943
24 H 0.067 0.933
25 H 0.035 0.965
26 H 0.260 0.740
27 H 0.330 0.670
28 H 0.015 0.985
29 H 0.055 0.945
30 H 0.063 0.937
31 H 0.054 0.946
32 H 0.066 0.934
33 H 0.382 0.618
34 H 0.105 0.895
35 H 0.099 0.901
36 H 0.103 0.897
37 H 0.107 0.893
38 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.439 9.518 8.438 13.834
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.160 4.160
3 C 0.117 3.883
4 H -0.017 1.017
5 C -0.550 4.550
6 H 0.068 0.932
7 C -0.189 4.189
8 N -0.561 5.561
9 Si 0.780 3.220
10 H -0.199 1.199
11 H -0.209 1.209
12 H -0.199 1.199
13 N -0.309 5.309
14 C -0.078 4.078
15 C 0.134 3.866
16 C -0.182 4.182
17 O -0.369 6.369
18 C -0.216 4.216
19 C -0.216 4.216
20 C -0.189 4.189
21 H 0.076 0.924
22 H 0.055 0.945
23 H 0.076 0.924
24 H 0.086 0.914
25 H 0.053 0.947
26 H 0.069 0.931
27 H 0.149 0.851
28 H 0.033 0.967
29 H 0.074 0.926
30 H 0.082 0.918
31 H 0.073 0.927
32 H 0.085 0.915
33 H 0.230 0.770
34 H 0.123 0.877
35 H 0.117 0.883
36 H 0.122 0.878
37 H 0.126 0.874
38 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -4.377 9.243 8.981 13.610
hybrid contribution -0.152 0.033 -1.644 1.651
sum -4.529 9.275 7.337 12.664
Atomic orbital electron populations
1.21737 0.96265 1.01120 1.00420 1.21594 0.94268 0.99078 1.01078
1.18925 0.94018 0.90600 0.84773 1.01695 1.21457 0.92867 1.36558
1.04104 0.93205 1.25684 1.02265 0.95354 0.95609 1.69993 1.36299
1.39964 1.09877 0.85670 0.80820 0.78278 0.77196 1.19905 1.20917
1.19870 1.60453 1.37390 1.02854 1.30222 1.22402 0.99483 0.89874
0.96026 1.20545 0.85200 0.89183 0.91718 1.21643 0.96071 1.02338
0.98196 1.86515 1.17213 1.81929 1.51241 1.22933 1.05693 0.93097
0.99899 1.23195 0.92536 1.01834 1.03989 1.22898 0.99767 1.01212
0.95035 0.92426 0.94500 0.92435 0.91428 0.94664 0.93088 0.85123
0.96701 0.92618 0.91762 0.92668 0.91527 0.77005 0.87696 0.88257
0.87845 0.87420 0.88787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.29 9.67 71.98 0.70 -4.59 16
2 C -0.12 -5.86 5.36 30.59 0.16 -5.70 16
3 C 0.23 11.49 2.02 44.17 0.09 11.58 16
4 H -0.03 -1.96 7.85 -2.39 -0.02 -1.97 16
5 C -0.51 -28.87 8.56 25.60 0.22 -28.65 16
6 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16
7 C 0.01 0.50 5.29 84.65 0.45 0.94 16
8 N -0.92 -53.65 11.29 21.44 0.24 -53.41 16
9 Si 0.95 44.61 29.54 68.60 2.03 46.64 16
10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16
11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16
12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16
13 N -0.68 -28.91 5.50 -495.45 -2.72 -31.63 16
14 C 0.05 1.97 4.60 86.30 0.40 2.37 16
15 C 0.17 5.20 0.99 -10.79 -0.01 5.19 16
16 C -0.13 -3.87 7.34 71.98 0.53 -3.35 16
17 O -0.56 -15.91 12.39 -148.98 -1.85 -17.76 16
18 C -0.20 -4.84 5.32 -10.79 -0.06 -4.90 16
19 C -0.18 -3.92 9.66 30.62 0.30 -3.63 16
20 C -0.15 -3.07 9.86 30.62 0.30 -2.77 16
21 H 0.06 1.95 6.61 -2.39 -0.02 1.94 16
22 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16
23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
24 H 0.07 3.70 5.94 -2.39 -0.01 3.68 16
25 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16
26 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16
27 H 0.33 13.02 6.10 -89.68 -0.55 12.48 16
28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16
29 H 0.06 2.36 7.93 -2.39 -0.02 2.35 16
30 H 0.06 1.72 6.96 -2.39 -0.02 1.70 16
31 H 0.05 1.97 7.60 -2.38 -0.02 1.95 16
32 H 0.07 2.04 6.74 -2.39 -0.02 2.03 16
33 H 0.38 8.28 9.05 -74.06 -0.67 7.61 16
34 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16
35 H 0.10 2.26 5.89 -2.39 -0.01 2.25 16
36 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16
37 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16
38 H 0.09 1.97 7.28 -2.39 -0.02 1.95 16
Total: -1.00 -61.85 299.76 0.59 -61.26
By element:
Atomic # 1 Polarization: 28.58 SS G_CDS: -0.18 Total: 28.41 kcal
Atomic # 6 Polarization: -36.58 SS G_CDS: 3.07 Total: -33.51 kcal
Atomic # 7 Polarization: -82.56 SS G_CDS: -2.48 Total: -85.04 kcal
Atomic # 8 Polarization: -15.91 SS G_CDS: -1.85 Total: -17.76 kcal
Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal
Total: -61.85 0.59 -61.26 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000379608327.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 6.257 kcal
(2) G-P(sol) polarization free energy of solvation -61.849 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.593 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.255 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.998 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds