Wall clock time and date at job start Mon Mar 30 2020 03:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46856 * 2 1 4 4 H 1.09001 * 109.47355 * 305.65114 * 3 2 1 5 5 C 1.50708 * 109.46664 * 185.65558 * 3 2 1 6 6 H 1.08000 * 119.99377 * 239.99665 * 5 3 2 7 7 C 1.37872 * 120.00082 * 60.00229 * 5 3 2 8 8 N 1.31506 * 120.00242 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99927 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47212 * 59.99335 * 9 7 5 11 11 H 1.48492 * 109.47252 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46674 * 299.99814 * 9 7 5 13 13 N 1.46893 * 109.47631 * 65.65606 * 3 2 1 14 14 C 1.46902 * 111.00476 * 205.47138 * 13 3 2 15 15 C 1.52998 * 109.47465 * 185.21017 * 14 13 3 16 16 C 1.53004 * 109.46741 * 60.00108 * 15 14 13 17 17 O 1.42898 * 109.46872 * 300.00015 * 15 14 13 18 18 C 1.52997 * 109.47223 * 179.97438 * 15 14 13 19 19 C 1.53002 * 117.49806 * 253.75062 * 18 15 14 20 20 C 1.52999 * 117.50153 * 185.09027 * 18 15 14 21 21 H 1.09000 * 109.47442 * 295.53230 * 1 2 3 22 22 H 1.09003 * 109.47147 * 55.53586 * 1 2 3 23 23 H 1.08997 * 109.47309 * 175.52719 * 1 2 3 24 24 H 1.08999 * 109.47202 * 239.99528 * 2 1 3 25 25 H 1.08998 * 109.47024 * 119.99539 * 2 1 3 26 26 H 0.97002 * 120.00247 * 179.97438 * 8 7 5 27 27 H 1.00912 * 110.99713 * 329.42344 * 13 3 2 28 28 H 1.08999 * 109.47157 * 65.20822 * 14 13 3 29 29 H 1.09002 * 109.46530 * 305.21514 * 14 13 3 30 30 H 1.09003 * 109.46489 * 180.02562 * 16 15 14 31 31 H 1.09007 * 109.47090 * 299.99441 * 16 15 14 32 32 H 1.08996 * 109.47629 * 59.99783 * 16 15 14 33 33 H 0.96697 * 114.00207 * 299.99161 * 17 15 14 34 34 H 1.09004 * 115.54807 * 39.41429 * 18 15 14 35 35 H 1.09002 * 117.49963 * 359.97438 * 19 18 15 36 36 H 1.09004 * 117.49822 * 145.01885 * 19 18 15 37 37 H 1.08999 * 117.49984 * 214.98262 * 20 18 15 38 38 H 1.09001 * 117.49558 * 359.97438 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5963 1.9848 -0.8351 5 6 3.5405 1.4448 -0.1400 6 1 4.1541 1.8865 0.6312 7 6 4.1299 0.8831 -1.2527 8 7 3.3828 0.3450 -2.1916 9 14 5.9899 0.8853 -1.4259 10 1 6.5939 0.1462 -0.2882 11 1 6.3691 0.2259 -2.7012 12 1 6.4853 2.2853 -1.4255 13 7 1.6650 2.0945 1.2617 14 6 1.5734 3.5512 1.0948 15 6 1.3097 4.2046 2.4529 16 6 2.4562 3.8721 3.4099 17 8 0.0819 3.7086 2.9897 18 6 1.2150 5.7218 2.2791 19 6 2.3936 6.5642 2.7712 20 6 1.0724 6.5703 3.5442 21 1 -0.3634 0.4429 0.9273 22 1 -0.3633 0.5816 -0.8473 23 1 -0.3634 -1.0245 -0.0801 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 3.7974 -0.0498 -2.9747 27 1 0.8010 1.7167 1.6212 28 1 0.7567 3.7881 0.4129 29 1 2.5100 3.9294 0.6852 30 1 2.2681 4.3373 4.3776 31 1 2.5241 2.7912 3.5339 32 1 3.3928 4.2503 3.0004 33 1 -0.6898 3.8842 2.4341 34 1 0.6931 6.0607 1.3841 35 1 3.2363 6.0376 3.2192 36 1 2.6468 7.4576 2.2003 37 1 0.4568 7.4677 3.4816 38 1 1.0456 6.0476 4.5003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379608327.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:11 Heat of formation + Delta-G solvation = -54.998443 kcal Electronic energy + Delta-G solvation = -16623.933505 eV Core-core repulsion = 14079.979386 eV Total energy + Delta-G solvation = -2543.954118 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29551 -37.86439 -36.32015 -34.33304 -33.03996 -30.82350 -28.61359 -26.86906 -24.78146 -23.41139 -22.93440 -21.49636 -20.45944 -18.37361 -17.70684 -17.09498 -16.67637 -16.10355 -15.73094 -15.47032 -14.80255 -14.53626 -13.89261 -13.81904 -13.62621 -13.26350 -13.09505 -12.91964 -12.75849 -12.59070 -12.47703 -12.04160 -11.97037 -11.85448 -11.62183 -11.51094 -11.36854 -11.04349 -11.00591 -10.54006 -10.41266 -8.93565 -8.06062 -6.18194 1.41265 1.42932 1.50525 2.43894 2.81689 3.18467 3.42712 3.59617 3.95592 4.05150 4.05443 4.20608 4.26927 4.48953 4.55860 4.57183 4.69984 4.78364 4.87921 4.90178 4.99249 5.03425 5.10469 5.16414 5.24695 5.29797 5.31921 5.38061 5.54044 5.59571 5.75177 5.90370 6.37264 6.52435 6.91107 6.95704 7.05206 7.50950 8.96927 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025949 B = 0.007906 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.795181 B = 3540.716277 C = 4313.512673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.225 3.775 4 H -0.034 1.034 5 C -0.511 4.511 6 H 0.050 0.950 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.954 3.046 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.677 5.677 14 C 0.052 3.948 15 C 0.174 3.826 16 C -0.125 4.125 17 O -0.562 6.562 18 C -0.197 4.197 19 C -0.179 4.179 20 C -0.152 4.152 21 H 0.057 0.943 22 H 0.036 0.964 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.035 0.965 26 H 0.260 0.740 27 H 0.330 0.670 28 H 0.015 0.985 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.382 0.618 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.439 9.518 8.438 13.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.117 3.883 4 H -0.017 1.017 5 C -0.550 4.550 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.780 3.220 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.199 1.199 13 N -0.309 5.309 14 C -0.078 4.078 15 C 0.134 3.866 16 C -0.182 4.182 17 O -0.369 6.369 18 C -0.216 4.216 19 C -0.216 4.216 20 C -0.189 4.189 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.053 0.947 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.230 0.770 34 H 0.123 0.877 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.377 9.243 8.981 13.610 hybrid contribution -0.152 0.033 -1.644 1.651 sum -4.529 9.275 7.337 12.664 Atomic orbital electron populations 1.21737 0.96265 1.01120 1.00420 1.21594 0.94268 0.99078 1.01078 1.18925 0.94018 0.90600 0.84773 1.01695 1.21457 0.92867 1.36558 1.04104 0.93205 1.25684 1.02265 0.95354 0.95609 1.69993 1.36299 1.39964 1.09877 0.85670 0.80820 0.78278 0.77196 1.19905 1.20917 1.19870 1.60453 1.37390 1.02854 1.30222 1.22402 0.99483 0.89874 0.96026 1.20545 0.85200 0.89183 0.91718 1.21643 0.96071 1.02338 0.98196 1.86515 1.17213 1.81929 1.51241 1.22933 1.05693 0.93097 0.99899 1.23195 0.92536 1.01834 1.03989 1.22898 0.99767 1.01212 0.95035 0.92426 0.94500 0.92435 0.91428 0.94664 0.93088 0.85123 0.96701 0.92618 0.91762 0.92668 0.91527 0.77005 0.87696 0.88257 0.87845 0.87420 0.88787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.29 9.67 71.98 0.70 -4.59 16 2 C -0.12 -5.86 5.36 30.59 0.16 -5.70 16 3 C 0.23 11.49 2.02 44.17 0.09 11.58 16 4 H -0.03 -1.96 7.85 -2.39 -0.02 -1.97 16 5 C -0.51 -28.87 8.56 25.60 0.22 -28.65 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 7 C 0.01 0.50 5.29 84.65 0.45 0.94 16 8 N -0.92 -53.65 11.29 21.44 0.24 -53.41 16 9 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.68 -28.91 5.50 -495.45 -2.72 -31.63 16 14 C 0.05 1.97 4.60 86.30 0.40 2.37 16 15 C 0.17 5.20 0.99 -10.79 -0.01 5.19 16 16 C -0.13 -3.87 7.34 71.98 0.53 -3.35 16 17 O -0.56 -15.91 12.39 -148.98 -1.85 -17.76 16 18 C -0.20 -4.84 5.32 -10.79 -0.06 -4.90 16 19 C -0.18 -3.92 9.66 30.62 0.30 -3.63 16 20 C -0.15 -3.07 9.86 30.62 0.30 -2.77 16 21 H 0.06 1.95 6.61 -2.39 -0.02 1.94 16 22 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 23 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.07 3.70 5.94 -2.39 -0.01 3.68 16 25 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 26 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 27 H 0.33 13.02 6.10 -89.68 -0.55 12.48 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 2.36 7.93 -2.39 -0.02 2.35 16 30 H 0.06 1.72 6.96 -2.39 -0.02 1.70 16 31 H 0.05 1.97 7.60 -2.38 -0.02 1.95 16 32 H 0.07 2.04 6.74 -2.39 -0.02 2.03 16 33 H 0.38 8.28 9.05 -74.06 -0.67 7.61 16 34 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 35 H 0.10 2.26 5.89 -2.39 -0.01 2.25 16 36 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.09 1.97 7.28 -2.39 -0.02 1.95 16 Total: -1.00 -61.85 299.76 0.59 -61.26 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: -0.18 Total: 28.41 kcal Atomic # 6 Polarization: -36.58 SS G_CDS: 3.07 Total: -33.51 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -2.48 Total: -85.04 kcal Atomic # 8 Polarization: -15.91 SS G_CDS: -1.85 Total: -17.76 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -61.85 0.59 -61.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379608327.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.257 kcal (2) G-P(sol) polarization free energy of solvation -61.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds