Wall clock time and date at job start Mon Mar 30 2020 03:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46955 * 2 1 4 4 H 1.09005 * 110.59189 * 309.66277 * 3 2 1 5 5 C 1.54936 * 110.66727 * 186.66039 * 3 2 1 6 6 H 1.09000 * 110.72166 * 322.50780 * 5 3 2 7 7 C 1.53003 * 110.72518 * 85.79119 * 5 3 2 8 8 O 1.42904 * 109.47226 * 179.97438 * 7 5 3 9 9 C 1.54592 * 102.92114 * 204.14893 * 5 3 2 10 10 C 1.53993 * 105.14059 * 21.95626 * 9 5 3 11 11 N 1.47896 * 107.22586 * 1.12591 * 10 9 5 12 12 C 1.46903 * 110.99986 * 214.25449 * 11 10 9 13 13 C 1.53004 * 109.46677 * 74.04050 * 12 11 10 14 14 C 1.50708 * 109.46672 * 185.57101 * 13 12 11 15 15 H 1.07996 * 119.99731 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00096 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99559 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00018 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47477 * 90.00072 * 18 16 14 20 20 H 1.48506 * 109.46984 * 209.99918 * 18 16 14 21 21 H 1.48503 * 109.47115 * 329.99800 * 18 16 14 22 22 H 1.08998 * 109.46962 * 50.45041 * 1 2 3 23 23 H 1.09004 * 109.47048 * 170.44958 * 1 2 3 24 24 H 1.09000 * 109.46982 * 290.44462 * 1 2 3 25 25 H 1.09000 * 109.47189 * 240.00011 * 2 1 3 26 26 H 1.08997 * 109.47191 * 119.99591 * 2 1 3 27 27 H 1.09006 * 109.46578 * 299.95514 * 7 5 3 28 28 H 1.09000 * 109.47154 * 59.95277 * 7 5 3 29 29 H 0.96699 * 113.99797 * 180.02562 * 8 7 5 30 30 H 1.09001 * 110.31007 * 263.03862 * 9 5 3 31 31 H 1.09004 * 110.30992 * 140.87316 * 9 5 3 32 32 H 1.08995 * 109.91422 * 120.57888 * 10 9 5 33 33 H 1.09002 * 109.91174 * 241.67327 * 10 9 5 34 34 H 1.09000 * 109.47072 * 194.03291 * 12 11 10 35 35 H 1.08993 * 109.46969 * 314.03616 * 12 11 10 36 36 H 1.08997 * 109.46963 * 305.56679 * 13 12 11 37 37 H 1.08995 * 109.47513 * 65.57214 * 13 12 11 38 38 H 0.97005 * 119.99688 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5537 2.0211 -0.7855 5 6 3.5798 1.4782 -0.1681 6 1 4.0460 0.6550 0.3732 7 6 3.9638 1.4409 -1.6487 8 8 5.3870 1.4754 -1.7727 9 6 3.9651 2.8358 0.4629 10 6 2.7981 3.1875 1.4041 11 7 1.8247 2.0766 1.3289 12 6 0.4485 2.5725 1.4639 13 6 0.0308 3.2757 0.1708 14 6 -1.3271 3.9026 0.3561 15 1 -1.8408 3.8085 1.3014 16 6 -1.9135 4.5964 -0.6811 17 7 -1.2880 4.7106 -1.8324 18 14 -3.5962 5.3740 -0.4512 19 1 -3.4358 6.7603 0.0563 20 1 -4.3102 5.4030 -1.7531 21 1 -4.3806 4.5769 0.5259 22 1 -0.3633 0.6544 -0.7924 23 1 -0.3633 -1.0135 -0.1705 24 1 -0.3633 0.3590 0.9629 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.5821 0.5250 -2.1000 28 1 3.5334 2.3034 -2.1575 29 1 5.7028 1.4549 -2.6865 30 1 4.0697 3.5965 -0.3107 31 1 4.8920 2.7406 1.0287 32 1 3.1637 3.2924 2.4256 33 1 2.3276 4.1161 1.0811 34 1 -0.2224 1.7349 1.6549 35 1 0.3959 3.2768 2.2940 36 1 0.7582 4.0500 -0.0729 37 1 -0.0121 2.5491 -0.6405 38 1 -1.7004 5.1990 -2.5620 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385751096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:28 Heat of formation + Delta-G solvation = -59.300209 kcal Electronic energy + Delta-G solvation = -16858.204950 eV Core-core repulsion = 14314.064294 eV Total energy + Delta-G solvation = -2544.140657 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36810 -36.56870 -33.64515 -32.84756 -32.01810 -28.92421 -27.71457 -25.37206 -23.68413 -22.33723 -21.40880 -19.87404 -18.80036 -17.11659 -16.56676 -15.70166 -14.96963 -14.56160 -14.25331 -14.14200 -13.42546 -13.02845 -12.67073 -12.59805 -12.31795 -12.07211 -11.62559 -11.49432 -11.02654 -10.87848 -10.79320 -10.65671 -10.57819 -10.47724 -10.12699 -9.99500 -9.86033 -9.78664 -9.39618 -9.05674 -8.35144 -7.51340 -6.04148 -4.06233 3.29119 3.35685 3.39096 4.23505 4.42701 4.66100 4.99459 5.18360 5.29639 5.31645 5.56069 5.60419 5.64372 5.71214 5.77128 5.96861 5.98536 6.15753 6.17606 6.28533 6.32374 6.40794 6.46898 6.48733 6.57537 6.69945 6.74233 6.94472 7.03888 7.46690 7.56667 7.68471 7.73730 7.81851 7.99449 8.40663 9.00432 9.57856 11.06821 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030062 B = 0.007267 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.190501 B = 3851.991263 C = 3989.780023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.102 4.102 3 C 0.060 3.940 4 H 0.080 0.920 5 C -0.087 4.087 6 H 0.082 0.918 7 C 0.083 3.917 8 O -0.575 6.575 9 C -0.116 4.116 10 C 0.031 3.969 11 N -0.515 5.515 12 C 0.040 3.960 13 C -0.009 4.009 14 C -0.517 4.517 15 H 0.055 0.945 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.891 3.109 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.063 0.937 23 H 0.041 0.959 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.375 0.625 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.013 0.987 37 H 0.028 0.972 38 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.886 -6.883 0.700 11.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.140 4.140 3 C -0.048 4.048 4 H 0.098 0.902 5 C -0.106 4.106 6 H 0.100 0.900 7 C 0.005 3.995 8 O -0.379 6.379 9 C -0.154 4.154 10 C -0.097 4.097 11 N -0.239 5.239 12 C -0.087 4.087 13 C -0.046 4.046 14 C -0.556 4.556 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.221 0.779 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.032 0.968 37 H 0.046 0.954 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.886 -7.159 1.633 11.528 hybrid contribution -1.149 1.197 -1.275 2.093 sum 7.737 -5.962 0.358 9.775 Atomic orbital electron populations 1.22038 0.95425 1.00560 1.03667 1.21378 0.96415 0.95241 1.00964 1.22981 0.92705 0.96019 0.93102 0.90194 1.22052 0.96022 0.98647 0.93850 0.90000 1.22243 0.80525 0.99874 0.96853 1.86467 1.22017 1.97679 1.31776 1.22326 0.98064 0.96482 0.98538 1.22828 0.93018 0.94744 0.99154 1.65066 1.05196 1.24979 1.28616 1.22629 0.87408 0.98649 1.00048 1.19716 0.96416 0.95539 0.92960 1.21174 1.02754 1.33288 0.98420 0.92690 1.25004 0.97691 0.96360 0.95268 1.69959 1.38264 1.42160 1.03079 0.86614 0.84355 0.79721 0.77454 1.20719 1.21256 1.19826 0.91758 0.93984 0.91400 0.92640 0.91838 0.93657 0.93265 0.77933 0.91783 0.91676 0.91423 0.92904 0.90919 0.92433 0.96842 0.95354 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 8.78 37.16 0.33 -2.35 16 2 C -0.10 -1.60 5.65 -26.73 -0.15 -1.75 16 3 C 0.06 1.05 1.61 -65.63 -0.11 0.94 16 4 H 0.08 1.63 5.19 -51.93 -0.27 1.36 16 5 C -0.09 -1.34 2.79 -88.76 -0.25 -1.59 16 6 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 7 C 0.08 1.15 6.37 37.16 0.24 1.38 16 8 O -0.57 -7.41 13.50 -35.23 -0.48 -7.88 16 9 C -0.12 -1.84 6.36 -25.38 -0.16 -2.00 16 10 C 0.03 0.54 6.40 -2.76 -0.02 0.52 16 11 N -0.51 -9.58 5.24 -222.41 -1.16 -10.74 16 12 C 0.04 0.84 4.70 -3.82 -0.02 0.82 16 13 C -0.01 -0.21 3.70 -27.88 -0.10 -0.32 16 14 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 15 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 18 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H 0.06 1.23 6.58 -51.93 -0.34 0.88 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.07 1.20 5.25 -51.93 -0.27 0.93 16 25 H 0.05 0.77 7.85 -51.93 -0.41 0.36 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.57 7.85 -51.93 -0.41 0.16 16 28 H 0.05 0.72 8.08 -51.93 -0.42 0.30 16 29 H 0.37 3.04 9.12 45.56 0.42 3.45 16 30 H 0.06 1.03 7.80 -51.93 -0.41 0.63 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 1.03 6.43 -51.93 -0.33 0.70 16 34 H 0.07 1.51 5.24 -51.93 -0.27 1.23 16 35 H 0.06 1.23 8.03 -51.93 -0.42 0.81 16 36 H 0.01 0.37 6.71 -51.93 -0.35 0.02 16 37 H 0.03 0.74 4.49 -51.93 -0.23 0.51 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 289.11 15.07 4.36 4.36 Total: -1.00 -30.10 289.11 -7.58 -37.69 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -5.36 Total: 3.26 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -0.65 Total: -17.50 kcal Atomic # 7 Polarization: -36.00 SS G_CDS: -0.43 Total: -36.43 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.48 Total: -7.88 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.10 -7.58 -37.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385751096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.614 kcal (2) G-P(sol) polarization free energy of solvation -30.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds