Wall clock time and date at job start Mon Mar 30 2020 03:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46955 * 2 1 4 4 H 1.09005 * 110.59189 * 309.66277 * 3 2 1 5 5 C 1.54936 * 110.66727 * 186.66039 * 3 2 1 6 6 H 1.09000 * 110.72166 * 322.50780 * 5 3 2 7 7 C 1.53003 * 110.72518 * 85.79119 * 5 3 2 8 8 O 1.42904 * 109.47226 * 179.97438 * 7 5 3 9 9 C 1.54592 * 102.92114 * 204.14893 * 5 3 2 10 10 C 1.53993 * 105.14059 * 21.95626 * 9 5 3 11 11 N 1.47896 * 107.22586 * 1.12591 * 10 9 5 12 12 C 1.46903 * 110.99986 * 214.25449 * 11 10 9 13 13 C 1.53004 * 109.46677 * 74.04050 * 12 11 10 14 14 C 1.50708 * 109.46672 * 185.57101 * 13 12 11 15 15 H 1.07996 * 119.99731 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00096 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99559 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00018 * 180.02562 * 16 14 13 19 19 H 1.48494 * 109.47477 * 90.00072 * 18 16 14 20 20 H 1.48506 * 109.46984 * 209.99918 * 18 16 14 21 21 H 1.48503 * 109.47115 * 329.99800 * 18 16 14 22 22 H 1.08998 * 109.46962 * 50.45041 * 1 2 3 23 23 H 1.09004 * 109.47048 * 170.44958 * 1 2 3 24 24 H 1.09000 * 109.46982 * 290.44462 * 1 2 3 25 25 H 1.09000 * 109.47189 * 240.00011 * 2 1 3 26 26 H 1.08997 * 109.47191 * 119.99591 * 2 1 3 27 27 H 1.09006 * 109.46578 * 299.95514 * 7 5 3 28 28 H 1.09000 * 109.47154 * 59.95277 * 7 5 3 29 29 H 0.96699 * 113.99797 * 180.02562 * 8 7 5 30 30 H 1.09001 * 110.31007 * 263.03862 * 9 5 3 31 31 H 1.09004 * 110.30992 * 140.87316 * 9 5 3 32 32 H 1.08995 * 109.91422 * 120.57888 * 10 9 5 33 33 H 1.09002 * 109.91174 * 241.67327 * 10 9 5 34 34 H 1.09000 * 109.47072 * 194.03291 * 12 11 10 35 35 H 1.08993 * 109.46969 * 314.03616 * 12 11 10 36 36 H 1.08997 * 109.46963 * 305.56679 * 13 12 11 37 37 H 1.08995 * 109.47513 * 65.57214 * 13 12 11 38 38 H 0.97005 * 119.99688 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5537 2.0211 -0.7855 5 6 3.5798 1.4782 -0.1681 6 1 4.0460 0.6550 0.3732 7 6 3.9638 1.4409 -1.6487 8 8 5.3870 1.4754 -1.7727 9 6 3.9651 2.8358 0.4629 10 6 2.7981 3.1875 1.4041 11 7 1.8247 2.0766 1.3289 12 6 0.4485 2.5725 1.4639 13 6 0.0308 3.2757 0.1708 14 6 -1.3271 3.9026 0.3561 15 1 -1.8408 3.8085 1.3014 16 6 -1.9135 4.5964 -0.6811 17 7 -1.2880 4.7106 -1.8324 18 14 -3.5962 5.3740 -0.4512 19 1 -3.4358 6.7603 0.0563 20 1 -4.3102 5.4030 -1.7531 21 1 -4.3806 4.5769 0.5259 22 1 -0.3633 0.6544 -0.7924 23 1 -0.3633 -1.0135 -0.1705 24 1 -0.3633 0.3590 0.9629 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.5821 0.5250 -2.1000 28 1 3.5334 2.3034 -2.1575 29 1 5.7028 1.4549 -2.6865 30 1 4.0697 3.5965 -0.3107 31 1 4.8920 2.7406 1.0287 32 1 3.1637 3.2924 2.4256 33 1 2.3276 4.1161 1.0811 34 1 -0.2224 1.7349 1.6549 35 1 0.3959 3.2768 2.2940 36 1 0.7582 4.0500 -0.0729 37 1 -0.0121 2.5491 -0.6405 38 1 -1.7004 5.1990 -2.5620 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385751096.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:28 Heat of formation + Delta-G solvation = -81.393817 kcal Electronic energy + Delta-G solvation = -16859.163001 eV Core-core repulsion = 14314.064294 eV Total energy + Delta-G solvation = -2545.098707 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.79121 -37.69029 -35.51201 -34.20209 -33.76590 -30.62465 -29.18264 -26.97069 -25.34899 -23.85187 -22.99066 -21.18214 -20.34402 -18.64257 -18.14376 -17.14318 -16.58229 -16.34926 -15.65456 -15.48878 -14.79285 -14.70328 -14.19592 -13.93930 -13.86923 -13.75848 -13.28449 -12.91382 -12.87160 -12.54052 -12.41877 -12.22694 -12.07250 -11.88181 -11.78283 -11.48875 -11.34944 -11.11560 -11.01166 -10.84563 -10.48504 -9.14634 -8.21196 -6.31764 1.37879 1.38223 1.49551 2.38677 3.05306 3.11647 3.33143 3.70415 3.88105 4.08906 4.23833 4.32473 4.38173 4.45015 4.47871 4.54953 4.60915 4.74187 4.77993 4.86301 4.89076 4.99156 5.05411 5.12172 5.14011 5.26154 5.32959 5.37239 5.41307 5.62030 5.67127 5.81440 6.07445 6.12899 6.35894 6.84843 6.89953 7.36784 8.89473 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.030062 B = 0.007267 C = 0.007016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.190501 B = 3851.991263 C = 3989.780023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.097 4.097 3 C 0.059 3.941 4 H 0.044 0.956 5 C -0.081 4.081 6 H 0.093 0.907 7 C 0.089 3.911 8 O -0.583 6.583 9 C -0.112 4.112 10 C 0.028 3.972 11 N -0.509 5.509 12 C 0.054 3.946 13 C 0.007 3.993 14 C -0.540 4.540 15 H 0.057 0.943 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.960 3.040 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.263 1.263 22 H 0.031 0.969 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.033 0.967 29 H 0.396 0.604 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.023 0.977 34 H 0.079 0.921 35 H 0.052 0.948 36 H -0.019 1.019 37 H 0.014 0.986 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.240 -8.001 1.227 12.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.134 4.134 3 C -0.049 4.049 4 H 0.062 0.938 5 C -0.100 4.100 6 H 0.111 0.889 7 C 0.011 3.989 8 O -0.391 6.391 9 C -0.150 4.150 10 C -0.100 4.100 11 N -0.232 5.232 12 C -0.074 4.074 13 C -0.031 4.031 14 C -0.578 4.578 15 H 0.075 0.925 16 C -0.194 4.194 17 N -0.570 5.570 18 Si 0.785 3.215 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.187 1.187 22 H 0.050 0.950 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.080 0.920 28 H 0.052 0.948 29 H 0.246 0.754 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.042 0.958 34 H 0.097 0.903 35 H 0.071 0.929 36 H -0.001 1.001 37 H 0.032 0.968 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.258 -8.285 2.154 12.610 hybrid contribution -1.204 1.546 -1.467 2.448 sum 8.055 -6.739 0.688 10.525 Atomic orbital electron populations 1.21962 0.96472 1.01188 1.01583 1.21380 0.95370 0.94055 1.02634 1.22980 0.94256 0.96550 0.91154 0.93814 1.22021 0.94189 0.98564 0.95254 0.88854 1.22071 0.81249 1.00056 0.95527 1.86404 1.21064 1.97654 1.34025 1.22304 0.97982 0.96583 0.98116 1.22897 0.93302 0.93170 1.00623 1.65131 1.03799 1.24875 1.29400 1.22388 0.89167 0.98271 0.97539 1.19525 0.94658 0.94341 0.94591 1.21614 1.03982 1.33632 0.98615 0.92459 1.25894 1.01761 0.96866 0.94897 1.70090 1.40065 1.42942 1.03920 0.85524 0.79472 0.78857 0.77683 1.20067 1.20742 1.18724 0.94956 0.91449 0.92725 0.90431 0.90508 0.91959 0.94840 0.75437 0.92699 0.89754 0.89605 0.95846 0.90328 0.92917 1.00070 0.96764 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 8.78 71.98 0.63 -4.46 16 2 C -0.10 -2.86 5.65 30.60 0.17 -2.68 16 3 C 0.06 2.04 1.61 45.21 0.07 2.11 16 4 H 0.04 1.86 5.19 -2.38 -0.01 1.85 16 5 C -0.08 -2.39 2.79 -9.59 -0.03 -2.42 16 6 H 0.09 2.59 8.05 -2.39 -0.02 2.57 16 7 C 0.09 2.33 6.37 71.98 0.46 2.79 16 8 O -0.58 -13.70 13.50 -148.98 -2.01 -15.71 16 9 C -0.11 -3.44 6.36 31.47 0.20 -3.24 16 10 C 0.03 0.99 6.40 86.45 0.55 1.55 16 11 N -0.51 -18.83 5.24 -857.56 -4.49 -23.32 16 12 C 0.05 2.32 4.70 86.30 0.41 2.72 16 13 C 0.01 0.35 3.70 29.85 0.11 0.46 16 14 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 15 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 16 C 0.00 0.22 5.46 84.65 0.46 0.68 16 17 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 18 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H 0.03 1.25 6.58 -2.39 -0.02 1.23 16 23 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 24 H 0.05 1.91 5.25 -2.39 -0.01 1.90 16 25 H 0.08 1.96 7.85 -2.39 -0.02 1.94 16 26 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.06 1.42 7.85 -2.38 -0.02 1.40 16 28 H 0.03 0.97 8.08 -2.39 -0.02 0.96 16 29 H 0.40 5.48 9.12 -74.06 -0.68 4.81 16 30 H 0.05 1.78 7.80 -2.39 -0.02 1.76 16 31 H 0.08 2.28 8.14 -2.38 -0.02 2.26 16 32 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.02 0.95 6.43 -2.39 -0.02 0.94 16 34 H 0.08 3.28 5.24 -2.39 -0.01 3.27 16 35 H 0.05 2.28 8.03 -2.39 -0.02 2.26 16 36 H -0.02 -1.10 6.71 -2.39 -0.02 -1.12 16 37 H 0.01 0.78 4.49 -2.39 -0.01 0.77 16 38 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 Total: -1.00 -64.97 289.11 -0.55 -65.52 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.37 Total: 15.99 kcal Atomic # 6 Polarization: -36.23 SS G_CDS: 3.27 Total: -32.95 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -4.21 Total: -79.28 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -2.01 Total: -15.71 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -64.97 -0.55 -65.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385751096.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.871 kcal (2) G-P(sol) polarization free energy of solvation -64.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds