Wall clock time and date at job start Mon Mar 30 2020 03:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47436 * 2 1 4 4 H 1.09006 * 109.90653 * 306.08537 * 3 2 1 5 5 C 1.53990 * 109.91867 * 184.98940 * 3 2 1 6 6 H 1.09001 * 110.31312 * 120.30910 * 5 3 2 7 7 C 1.53000 * 110.30848 * 358.13616 * 5 3 2 8 8 O 1.42906 * 109.46926 * 177.83347 * 7 5 3 9 9 C 1.54598 * 105.13951 * 239.22258 * 5 3 2 10 10 C 1.54939 * 102.91955 * 338.04203 * 9 5 3 11 11 N 1.48056 * 110.16126 * 67.14757 * 3 2 1 12 12 C 1.46904 * 111.16382 * 265.17653 * 11 3 2 13 13 C 1.52994 * 109.47283 * 176.93147 * 12 11 3 14 14 C 1.50706 * 109.47112 * 181.54427 * 13 12 11 15 15 H 1.07993 * 120.00043 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99612 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99526 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00532 * 0.02562 * 16 14 13 19 19 H 1.48508 * 109.47251 * 89.99735 * 18 16 14 20 20 H 1.48494 * 109.47465 * 209.99963 * 18 16 14 21 21 H 1.48502 * 109.46871 * 329.99850 * 18 16 14 22 22 H 1.08996 * 109.46827 * 52.55940 * 1 2 3 23 23 H 1.08996 * 109.47043 * 172.56298 * 1 2 3 24 24 H 1.09007 * 109.46885 * 292.56438 * 1 2 3 25 25 H 1.09004 * 109.47251 * 239.99706 * 2 1 3 26 26 H 1.09004 * 109.47055 * 119.99893 * 2 1 3 27 27 H 1.08999 * 109.47013 * 297.82721 * 7 5 3 28 28 H 1.08993 * 109.47071 * 57.83825 * 7 5 3 29 29 H 0.96702 * 113.99819 * 180.02562 * 8 7 5 30 30 H 1.08996 * 110.72605 * 219.68679 * 9 5 3 31 31 H 1.08999 * 110.87946 * 96.46958 * 9 5 3 32 32 H 1.09002 * 110.66804 * 155.84773 * 10 9 5 33 33 H 1.09006 * 110.66861 * 278.81224 * 10 9 5 34 34 H 1.09004 * 109.46611 * 296.92896 * 12 11 3 35 35 H 1.08998 * 109.47245 * 56.92882 * 12 11 3 36 36 H 1.09001 * 109.47319 * 301.54247 * 13 12 11 37 37 H 1.09005 * 109.47338 * 61.54825 * 13 12 11 38 38 H 0.97004 * 120.00118 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5947 1.9936 -0.8283 5 6 3.5747 1.4562 -0.1259 6 1 3.8761 2.0008 -1.0207 7 6 4.1172 0.0262 -0.1653 8 8 5.5360 0.0593 -0.3329 9 6 4.0773 2.1859 1.1410 10 6 2.8401 3.0087 1.5806 11 7 1.7013 2.1035 1.2808 12 6 0.4446 2.8565 1.1728 13 6 0.0925 3.4591 2.5343 14 6 -1.2161 4.1997 2.4326 15 1 -1.7435 4.2373 1.4910 16 6 -1.7398 4.8294 3.5419 17 7 -2.8820 5.4753 3.4532 18 14 -0.8271 4.7650 5.1704 19 1 0.1033 5.9189 5.2624 20 1 -1.8033 4.8261 6.2877 21 1 -0.0556 3.4990 5.2558 22 1 -0.3633 0.6247 -0.8159 23 1 -0.3633 -1.0190 -0.1330 24 1 -0.3633 0.3944 0.9491 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8734 -0.4807 0.7683 28 1 3.6654 -0.5109 -0.9992 29 1 5.9485 -0.8146 -0.3670 30 1 4.9126 2.8438 0.9014 31 1 4.3601 1.4717 1.9143 32 1 2.8848 3.2306 2.6468 33 1 2.7637 3.9283 1.0003 34 1 0.5617 3.6559 0.4411 35 1 -0.3542 2.1867 0.8544 36 1 0.0023 2.6618 3.2721 37 1 0.8782 4.1500 2.8401 38 1 -3.2503 5.9186 4.2335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385751100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:33 Heat of formation + Delta-G solvation = -59.116744 kcal Electronic energy + Delta-G solvation = -16538.108253 eV Core-core repulsion = 13993.975552 eV Total energy + Delta-G solvation = -2544.132701 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.59197 -36.66850 -33.92240 -33.04796 -32.11531 -29.44182 -28.10007 -25.31508 -23.93470 -22.75080 -21.13693 -19.82850 -18.89549 -17.50741 -16.82311 -15.80363 -15.16589 -14.82908 -14.53358 -14.13938 -13.65423 -13.23131 -13.12733 -12.66618 -12.33485 -12.22238 -12.13818 -11.67362 -11.41443 -11.08928 -11.00859 -10.82314 -10.70627 -10.49976 -10.25210 -9.90305 -9.81562 -9.78932 -9.56498 -9.17621 -8.51137 -7.91411 -6.02711 -4.00621 3.33251 3.40680 3.46949 4.08376 4.37266 4.48064 4.70359 4.79212 5.10398 5.26152 5.31467 5.32277 5.40228 5.43539 5.57855 5.66422 5.74806 5.83219 5.99646 6.06499 6.11059 6.13211 6.15909 6.29151 6.32157 6.40342 6.49133 6.59605 6.83327 7.20891 7.27833 7.50316 7.52871 7.66387 7.87688 8.55095 9.01500 9.60133 11.10730 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037786 B = 0.006508 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.828830 B = 4301.180019 C = 4742.467104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C 0.071 3.929 4 H 0.052 0.948 5 C -0.095 4.095 6 H 0.076 0.924 7 C 0.084 3.916 8 O -0.577 6.577 9 C -0.110 4.110 10 C 0.035 3.965 11 N -0.513 5.513 12 C 0.057 3.943 13 C -0.006 4.006 14 C -0.520 4.520 15 H 0.070 0.930 16 C 0.068 3.932 17 N -0.905 5.905 18 Si 0.879 3.121 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.263 1.263 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.048 0.952 29 H 0.375 0.625 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.076 0.924 36 H 0.024 0.976 37 H 0.009 0.991 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.735 -11.631 -6.901 19.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.038 4.038 4 H 0.070 0.930 5 C -0.114 4.114 6 H 0.095 0.905 7 C 0.007 3.993 8 O -0.382 6.382 9 C -0.148 4.148 10 C -0.093 4.093 11 N -0.238 5.238 12 C -0.070 4.070 13 C -0.044 4.044 14 C -0.559 4.559 15 H 0.088 0.912 16 C -0.133 4.133 17 N -0.544 5.544 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.187 1.187 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.222 0.778 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.028 0.972 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 13.388 -11.255 -6.384 18.619 hybrid contribution 0.410 0.186 0.210 0.497 sum 13.798 -11.069 -6.174 18.736 Atomic orbital electron populations 1.21893 0.95610 1.00791 1.03009 1.21629 0.96485 0.95491 1.01238 1.22390 0.92721 0.96132 0.92593 0.92973 1.21984 0.94648 0.95279 0.99475 0.90508 1.22454 0.80227 0.96949 0.99718 1.86477 1.21129 1.33908 1.96686 1.22469 0.97115 0.98767 0.96446 1.23206 0.90013 0.94476 1.01613 1.64786 1.02971 1.28049 1.27954 1.22455 0.89692 0.95218 0.99673 1.19535 0.96539 0.95614 0.92718 1.21091 1.04651 1.32143 0.97986 0.91180 1.24988 0.94725 0.94729 0.98884 1.69919 1.19063 1.35056 1.30340 0.86777 0.79797 0.79157 0.83610 1.20403 1.21437 1.18743 0.93183 0.93428 0.90932 0.92255 0.91202 0.92900 0.93421 0.77848 0.91455 0.91000 0.90044 0.93882 0.95717 0.90571 0.95762 0.97250 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.62 37.16 0.32 -1.79 16 2 C -0.11 -1.39 4.45 -26.73 -0.12 -1.51 16 3 C 0.07 1.01 2.59 -66.56 -0.17 0.84 16 4 H 0.05 0.78 7.76 -51.93 -0.40 0.38 16 5 C -0.09 -1.22 3.28 -89.26 -0.29 -1.51 16 6 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 7 C 0.08 0.90 5.15 37.16 0.19 1.09 16 8 O -0.58 -6.10 13.49 -35.23 -0.48 -6.57 16 9 C -0.11 -1.50 6.45 -24.87 -0.16 -1.66 16 10 C 0.03 0.57 5.64 -1.90 -0.01 0.56 16 11 N -0.51 -8.93 4.83 -222.45 -1.07 -10.00 16 12 C 0.06 1.16 4.34 -3.82 -0.02 1.15 16 13 C -0.01 -0.15 3.99 -27.88 -0.11 -0.27 16 14 C -0.52 -15.02 9.66 -34.44 -0.33 -15.36 16 15 H 0.07 2.16 7.99 -52.49 -0.42 1.75 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 18 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 22 H 0.05 0.68 8.11 -51.93 -0.42 0.26 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.07 1.16 6.43 -51.93 -0.33 0.83 16 25 H 0.06 0.62 6.42 -51.93 -0.33 0.29 16 26 H 0.07 0.89 7.08 -51.93 -0.37 0.52 16 27 H 0.05 0.56 6.99 -51.93 -0.36 0.20 16 28 H 0.05 0.45 6.45 -51.93 -0.34 0.11 16 29 H 0.38 2.18 9.12 45.56 0.42 2.60 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.97 7.82 -51.93 -0.41 0.57 16 32 H 0.08 1.38 7.74 -51.93 -0.40 0.98 16 33 H 0.04 0.72 7.91 -51.93 -0.41 0.31 16 34 H 0.02 0.52 7.99 -51.93 -0.41 0.10 16 35 H 0.08 1.55 5.33 -51.93 -0.28 1.28 16 36 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 37 H 0.01 0.23 6.60 -51.93 -0.34 -0.12 16 38 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 289.84 15.07 4.37 4.37 Total: -1.00 -31.79 289.84 -7.50 -39.30 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -5.62 Total: -0.57 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: -0.80 Total: -16.56 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.30 Total: -37.44 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.48 Total: -6.57 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.79 -7.50 -39.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385751100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.820 kcal (2) G-P(sol) polarization free energy of solvation -31.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds