Wall clock time and date at job start Mon Mar 30 2020 03:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47436 * 2 1 4 4 H 1.09006 * 109.90653 * 306.08537 * 3 2 1 5 5 C 1.53990 * 109.91867 * 184.98940 * 3 2 1 6 6 H 1.09001 * 110.31312 * 120.30910 * 5 3 2 7 7 C 1.53000 * 110.30848 * 358.13616 * 5 3 2 8 8 O 1.42906 * 109.46926 * 177.83347 * 7 5 3 9 9 C 1.54598 * 105.13951 * 239.22258 * 5 3 2 10 10 C 1.54939 * 102.91955 * 338.04203 * 9 5 3 11 11 N 1.48056 * 110.16126 * 67.14757 * 3 2 1 12 12 C 1.46904 * 111.16382 * 265.17653 * 11 3 2 13 13 C 1.52994 * 109.47283 * 176.93147 * 12 11 3 14 14 C 1.50706 * 109.47112 * 181.54427 * 13 12 11 15 15 H 1.07993 * 120.00043 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99612 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99526 * 180.02562 * 16 14 13 18 18 Si 1.86795 * 120.00532 * 0.02562 * 16 14 13 19 19 H 1.48508 * 109.47251 * 89.99735 * 18 16 14 20 20 H 1.48494 * 109.47465 * 209.99963 * 18 16 14 21 21 H 1.48502 * 109.46871 * 329.99850 * 18 16 14 22 22 H 1.08996 * 109.46827 * 52.55940 * 1 2 3 23 23 H 1.08996 * 109.47043 * 172.56298 * 1 2 3 24 24 H 1.09007 * 109.46885 * 292.56438 * 1 2 3 25 25 H 1.09004 * 109.47251 * 239.99706 * 2 1 3 26 26 H 1.09004 * 109.47055 * 119.99893 * 2 1 3 27 27 H 1.08999 * 109.47013 * 297.82721 * 7 5 3 28 28 H 1.08993 * 109.47071 * 57.83825 * 7 5 3 29 29 H 0.96702 * 113.99819 * 180.02562 * 8 7 5 30 30 H 1.08996 * 110.72605 * 219.68679 * 9 5 3 31 31 H 1.08999 * 110.87946 * 96.46958 * 9 5 3 32 32 H 1.09002 * 110.66804 * 155.84773 * 10 9 5 33 33 H 1.09006 * 110.66861 * 278.81224 * 10 9 5 34 34 H 1.09004 * 109.46611 * 296.92896 * 12 11 3 35 35 H 1.08998 * 109.47245 * 56.92882 * 12 11 3 36 36 H 1.09001 * 109.47319 * 301.54247 * 13 12 11 37 37 H 1.09005 * 109.47338 * 61.54825 * 13 12 11 38 38 H 0.97004 * 120.00118 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5947 1.9936 -0.8283 5 6 3.5747 1.4562 -0.1259 6 1 3.8761 2.0008 -1.0207 7 6 4.1172 0.0262 -0.1653 8 8 5.5360 0.0593 -0.3329 9 6 4.0773 2.1859 1.1410 10 6 2.8401 3.0087 1.5806 11 7 1.7013 2.1035 1.2808 12 6 0.4446 2.8565 1.1728 13 6 0.0925 3.4591 2.5343 14 6 -1.2161 4.1997 2.4326 15 1 -1.7435 4.2373 1.4910 16 6 -1.7398 4.8294 3.5419 17 7 -2.8820 5.4753 3.4532 18 14 -0.8271 4.7650 5.1704 19 1 0.1033 5.9189 5.2624 20 1 -1.8033 4.8261 6.2877 21 1 -0.0556 3.4990 5.2558 22 1 -0.3633 0.6247 -0.8159 23 1 -0.3633 -1.0190 -0.1330 24 1 -0.3633 0.3944 0.9491 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.8734 -0.4807 0.7683 28 1 3.6654 -0.5109 -0.9992 29 1 5.9485 -0.8146 -0.3670 30 1 4.9126 2.8438 0.9014 31 1 4.3601 1.4717 1.9143 32 1 2.8848 3.2306 2.6468 33 1 2.7637 3.9283 1.0003 34 1 0.5617 3.6559 0.4411 35 1 -0.3542 2.1867 0.8544 36 1 0.0023 2.6618 3.2721 37 1 0.8782 4.1500 2.8401 38 1 -3.2503 5.9186 4.2335 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385751100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:33 Heat of formation + Delta-G solvation = -83.071307 kcal Electronic energy + Delta-G solvation = -16539.147000 eV Core-core repulsion = 13993.975552 eV Total energy + Delta-G solvation = -2545.171449 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76546 -37.58070 -35.66515 -34.30385 -33.83771 -31.12947 -29.28388 -26.83813 -25.13601 -24.19482 -22.47444 -21.45239 -20.01685 -18.98091 -18.28117 -16.94611 -16.55720 -16.24250 -15.95016 -15.64203 -14.92747 -14.72325 -14.39772 -14.24334 -13.69951 -13.55521 -13.46627 -13.13306 -12.94444 -12.54308 -12.41530 -12.03113 -11.92965 -11.81529 -11.68644 -11.51251 -11.42414 -11.31540 -11.10555 -10.76989 -10.64539 -9.32433 -8.31702 -6.35823 1.33811 1.36127 1.49371 2.34798 3.03920 3.05698 3.27655 3.64651 3.75060 4.10763 4.21393 4.31465 4.37470 4.39808 4.46546 4.51211 4.52777 4.71669 4.72496 4.77893 4.89290 4.93723 5.03122 5.10735 5.14682 5.17262 5.22408 5.29022 5.43128 5.43600 5.53216 5.62329 6.05433 6.18914 6.28585 6.71506 6.98854 7.29080 8.85096 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.037786 B = 0.006508 C = 0.005903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.828830 B = 4301.180019 C = 4742.467104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.105 4.105 3 C 0.068 3.932 4 H 0.043 0.957 5 C -0.093 4.093 6 H 0.077 0.923 7 C 0.090 3.910 8 O -0.593 6.593 9 C -0.100 4.100 10 C 0.028 3.972 11 N -0.518 5.518 12 C 0.070 3.930 13 C 0.002 3.998 14 C -0.533 4.533 15 H 0.032 0.968 16 C 0.009 3.991 17 N -0.950 5.950 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.249 1.249 22 H 0.043 0.957 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.090 0.910 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.397 0.603 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.034 0.966 34 H 0.012 0.988 35 H 0.073 0.927 36 H 0.021 0.979 37 H 0.013 0.987 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.002 -13.336 -6.664 21.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.041 4.041 4 H 0.061 0.939 5 C -0.112 4.112 6 H 0.095 0.905 7 C 0.013 3.987 8 O -0.402 6.402 9 C -0.138 4.138 10 C -0.100 4.100 11 N -0.242 5.242 12 C -0.058 4.058 13 C -0.035 4.035 14 C -0.571 4.571 15 H 0.050 0.950 16 C -0.188 4.188 17 N -0.590 5.590 18 Si 0.773 3.227 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.173 1.173 22 H 0.062 0.938 23 H 0.086 0.914 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.246 0.754 30 H 0.095 0.905 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.052 0.948 34 H 0.030 0.970 35 H 0.091 0.909 36 H 0.039 0.961 37 H 0.031 0.969 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.679 -12.987 -6.164 21.272 hybrid contribution -0.327 0.722 0.043 0.794 sum 15.352 -12.265 -6.121 20.581 Atomic orbital electron populations 1.21867 0.96697 1.01683 1.01020 1.21639 0.95400 0.94343 1.02844 1.22493 0.94205 0.96791 0.90597 0.93875 1.21958 0.93202 0.97079 0.98966 0.90455 1.22339 0.80594 0.95144 1.00672 1.86416 1.20948 1.36084 1.96705 1.22407 0.95936 0.98593 0.96903 1.23270 0.91051 0.94616 1.01045 1.64745 1.01901 1.27511 1.30066 1.22135 0.91638 0.94979 0.97001 1.19389 0.94235 0.95056 0.94864 1.21404 1.06296 1.32745 0.96665 0.95001 1.25946 0.95565 0.94174 1.03153 1.70062 1.20931 1.36245 1.31811 0.85663 0.78695 0.80002 0.78346 1.19194 1.20680 1.17287 0.93786 0.91389 0.93997 0.89211 0.90871 0.92597 0.91585 0.75373 0.90476 0.90575 0.90910 0.94752 0.96954 0.90904 0.96105 0.96886 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 8.62 71.98 0.62 -3.42 16 2 C -0.10 -2.36 4.45 30.59 0.14 -2.22 16 3 C 0.07 1.83 2.59 45.03 0.12 1.95 16 4 H 0.04 1.25 7.76 -2.38 -0.02 1.24 16 5 C -0.09 -2.15 3.28 -9.92 -0.03 -2.18 16 6 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 7 C 0.09 1.59 5.15 71.98 0.37 1.96 16 8 O -0.59 -10.41 13.49 -148.98 -2.01 -12.42 16 9 C -0.10 -2.52 6.45 31.80 0.21 -2.31 16 10 C 0.03 0.89 5.64 86.65 0.49 1.38 16 11 N -0.52 -17.66 4.83 -857.69 -4.14 -21.80 16 12 C 0.07 2.94 4.34 86.30 0.37 3.31 16 13 C 0.00 0.11 3.99 29.85 0.12 0.23 16 14 C -0.53 -31.70 9.66 25.60 0.25 -31.45 16 15 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 16 C 0.01 0.52 5.47 84.65 0.46 0.98 16 17 N -0.95 -60.62 13.96 21.45 0.30 -60.32 16 18 Si 0.95 45.62 27.47 68.60 1.88 47.51 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.25 -11.34 6.54 99.48 0.65 -10.69 16 22 H 0.04 1.17 8.11 -2.39 -0.02 1.15 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.04 1.34 6.43 -2.38 -0.02 1.32 16 25 H 0.09 1.51 6.42 -2.39 -0.02 1.50 16 26 H 0.07 1.64 7.08 -2.38 -0.02 1.62 16 27 H 0.06 0.97 6.99 -2.39 -0.02 0.96 16 28 H 0.07 0.94 6.45 -2.39 -0.02 0.92 16 29 H 0.40 3.14 9.12 -74.06 -0.68 2.46 16 30 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.86 7.82 -2.39 -0.02 1.84 16 32 H 0.07 2.40 7.74 -2.39 -0.02 2.38 16 33 H 0.03 1.14 7.91 -2.38 -0.02 1.12 16 34 H 0.01 0.53 7.99 -2.39 -0.02 0.51 16 35 H 0.07 3.07 5.33 -2.39 -0.01 3.05 16 36 H 0.02 1.03 7.20 -2.39 -0.02 1.02 16 37 H 0.01 0.62 6.60 -2.38 -0.02 0.61 16 38 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -69.12 289.84 -0.56 -69.68 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.30 Total: 9.12 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: 3.11 Total: -31.78 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -3.84 Total: -82.12 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -2.01 Total: -12.42 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.88 Total: 47.51 kcal Total: -69.12 -0.56 -69.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385751100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.392 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds