Wall clock time and date at job start Mon Mar 30 2020 03:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47576 * 2 1 4 4 H 1.09007 * 109.46803 * 305.00305 * 3 2 1 5 5 C 1.50698 * 109.47288 * 185.00006 * 3 2 1 6 6 H 1.07995 * 119.99745 * 245.46433 * 5 3 2 7 7 C 1.37879 * 119.99692 * 65.46470 * 5 3 2 8 8 N 1.31507 * 120.00346 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99700 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47167 * 89.99912 * 9 7 5 11 11 H 1.48494 * 109.47075 * 210.00128 * 9 7 5 12 12 H 1.48503 * 109.46884 * 329.99824 * 9 7 5 13 13 N 1.46900 * 109.46978 * 64.99829 * 3 2 1 14 14 C 1.48530 * 110.99995 * 156.15337 * 13 3 2 15 15 C 1.54942 * 103.22781 * 159.72173 * 14 13 3 16 16 C 1.54594 * 102.91932 * 322.58638 * 15 14 13 17 17 H 1.08999 * 110.31052 * 263.03935 * 16 15 14 18 18 C 1.53001 * 110.30545 * 140.87454 * 16 15 14 19 19 O 1.42894 * 109.47207 * 69.28426 * 18 16 15 20 20 C 1.47903 * 111.00211 * 273.55415 * 13 3 2 21 21 H 1.08996 * 109.92218 * 94.80306 * 20 13 3 22 22 C 1.53004 * 109.91315 * 333.70138 * 20 13 3 23 23 H 1.09001 * 109.47048 * 300.00240 * 1 2 3 24 24 H 1.09001 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47097 * 60.00019 * 1 2 3 26 26 H 1.09005 * 109.46789 * 120.00405 * 2 1 3 27 27 H 1.09001 * 109.47048 * 239.99760 * 2 1 3 28 28 H 0.97004 * 120.00257 * 179.97438 * 8 7 5 29 29 H 1.08996 * 110.66824 * 278.15523 * 14 13 3 30 30 H 1.08999 * 110.66535 * 41.28305 * 14 13 3 31 31 H 1.08995 * 110.72308 * 204.22487 * 15 14 13 32 32 H 1.09004 * 110.87457 * 81.01553 * 15 14 13 33 33 H 1.09007 * 109.46897 * 189.28347 * 18 16 15 34 34 H 1.08999 * 109.46909 * 309.28113 * 18 16 15 35 35 H 0.96708 * 113.99975 * 180.02562 * 19 18 16 36 36 H 1.09001 * 109.46955 * 66.41816 * 22 20 13 37 37 H 1.08999 * 109.46962 * 186.41012 * 22 20 13 38 38 H 1.08992 * 109.47675 * 306.41417 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1505 1.8083 0.6907 7 6 4.1391 0.9809 -1.2770 8 7 3.3981 0.5370 -2.2687 9 14 6.0008 0.9837 -1.4308 10 1 6.5408 -0.3054 -0.9291 11 1 6.3794 1.1579 -2.8561 12 1 6.5619 2.1009 -0.6294 13 7 1.6514 2.0992 1.2552 14 6 2.5567 3.2356 1.5639 15 6 1.7269 4.0913 2.5537 16 6 0.2900 3.9678 1.9968 17 1 0.0507 4.8290 1.3731 18 6 -0.7153 3.8457 3.1438 19 8 -0.7909 5.0883 3.8452 20 6 0.2954 2.6806 1.1516 21 1 -0.4408 1.9775 1.5410 22 6 -0.0202 3.0099 -0.3089 23 1 -0.3633 0.5139 0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.8182 0.2115 -3.0801 29 1 3.4725 2.8805 2.0365 30 1 2.7835 3.8029 0.6612 31 1 2.0587 5.1294 2.5382 32 1 1.7857 3.6840 3.5631 33 1 -1.6969 3.5953 2.7414 34 1 -0.3922 3.0612 3.8281 35 1 -1.4106 5.0838 4.5876 36 1 -0.0856 2.0861 -0.8837 37 1 -0.9707 3.5404 -0.3645 38 1 0.7708 3.6377 -0.7190 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385759005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:08 Heat of formation + Delta-G solvation = -40.355561 kcal Electronic energy + Delta-G solvation = -17175.886671 eV Core-core repulsion = 14632.567516 eV Total energy + Delta-G solvation = -2543.319155 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.28885 -36.61642 -34.14214 -31.97388 -30.82083 -29.67446 -27.10938 -25.85212 -23.14904 -23.10340 -20.59654 -19.73940 -18.49131 -17.04158 -16.26597 -15.59308 -15.11225 -14.56969 -14.06181 -13.64954 -13.27151 -12.84397 -12.67422 -12.18104 -12.01513 -11.62928 -11.38486 -11.28743 -11.08357 -10.99796 -10.72810 -10.56683 -10.43870 -10.20483 -10.00701 -9.88651 -9.66582 -9.42758 -9.29812 -8.61221 -8.38808 -7.11137 -6.01146 -4.03782 3.30857 3.37550 3.40534 4.32323 4.43248 5.03893 5.14282 5.20830 5.30977 5.49912 5.67468 5.75699 5.84691 5.98152 6.03045 6.14435 6.17929 6.31402 6.34768 6.44738 6.52443 6.56757 6.75805 6.81709 6.87494 6.90836 7.11495 7.20776 7.37973 7.58123 7.69456 7.76108 7.88621 8.13193 8.37064 8.62016 9.04380 9.60895 11.06778 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034161 B = 0.008453 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.439431 B = 3311.483554 C = 3823.838469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.102 4.102 3 C 0.190 3.810 4 H 0.034 0.966 5 C -0.515 4.515 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.275 1.275 13 N -0.509 5.509 14 C 0.056 3.944 15 C -0.117 4.117 16 C -0.096 4.096 17 H 0.074 0.926 18 C 0.087 3.913 19 O -0.575 6.575 20 C 0.069 3.931 21 H 0.078 0.922 22 C -0.181 4.181 23 H 0.051 0.949 24 H 0.028 0.972 25 H 0.045 0.955 26 H 0.038 0.962 27 H 0.081 0.919 28 H 0.260 0.740 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.373 0.627 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 4.637 7.386 11.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.140 4.140 3 C 0.084 3.916 4 H 0.052 0.948 5 C -0.553 4.553 6 H 0.081 0.919 7 C -0.140 4.140 8 N -0.530 5.530 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.200 1.200 13 N -0.234 5.234 14 C -0.072 4.072 15 C -0.155 4.155 16 C -0.115 4.115 17 H 0.092 0.908 18 C 0.009 3.991 19 O -0.380 6.380 20 C -0.040 4.040 21 H 0.096 0.904 22 C -0.239 4.239 23 H 0.069 0.931 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.218 0.782 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.055 4.313 7.131 10.919 hybrid contribution 0.545 0.282 -0.490 0.785 sum -6.510 4.595 6.641 10.373 Atomic orbital electron populations 1.22203 0.99751 0.99049 1.00424 1.21455 0.91456 0.99648 1.01459 1.19740 0.94993 0.91171 0.85709 0.94834 1.21394 0.91307 1.41833 1.00806 0.91881 1.24926 0.97958 0.95351 0.95797 1.69920 1.34785 1.42681 1.05606 0.86604 0.85970 0.78411 0.77072 1.20714 1.21372 1.19978 1.64998 0.99182 1.22800 1.36389 1.22953 0.96315 0.91207 0.96691 1.22563 0.94119 0.99397 0.99408 1.22101 0.95295 0.98667 0.95423 0.90756 1.22314 0.97907 0.85202 0.93664 1.86500 1.67242 1.35641 1.48591 1.22469 0.94820 0.93166 0.93566 0.90407 1.22626 1.00043 1.02911 0.98324 0.93062 0.95285 0.93661 0.94333 0.90082 0.93048 0.90767 0.93810 0.92195 0.91689 0.94147 0.93291 0.78162 0.90003 0.94028 0.92523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 8.56 37.16 0.32 -2.79 16 2 C -0.10 -2.41 5.49 -26.73 -0.15 -2.56 16 3 C 0.19 4.64 1.49 -68.87 -0.10 4.54 16 4 H 0.03 0.89 4.62 -51.93 -0.24 0.65 16 5 C -0.51 -13.87 7.60 -34.44 -0.26 -14.13 16 6 H 0.06 1.70 5.86 -52.49 -0.31 1.39 16 7 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 8 N -0.89 -25.17 11.72 55.43 0.65 -24.52 16 9 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.51 -10.82 5.04 -216.05 -1.09 -11.90 16 14 C 0.06 1.14 5.12 -1.90 -0.01 1.13 16 15 C -0.12 -1.97 6.51 -24.87 -0.16 -2.14 16 16 C -0.10 -1.54 2.91 -89.26 -0.26 -1.80 16 17 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 18 C 0.09 1.17 6.13 37.16 0.23 1.39 16 19 O -0.58 -7.39 13.55 -35.23 -0.48 -7.86 16 20 C 0.07 1.24 2.33 -66.64 -0.16 1.08 16 21 H 0.08 1.35 5.52 -51.93 -0.29 1.06 16 22 C -0.18 -3.30 7.35 37.16 0.27 -3.03 16 23 H 0.05 0.95 4.94 -51.93 -0.26 0.69 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.04 0.88 5.98 -51.93 -0.31 0.57 16 26 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.08 2.14 6.42 -51.93 -0.33 1.81 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.07 1.55 6.97 -51.93 -0.36 1.19 16 30 H 0.04 0.95 7.76 -51.93 -0.40 0.55 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 1.07 7.76 -51.93 -0.40 0.66 16 33 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.65 7.99 -51.93 -0.42 0.23 16 35 H 0.37 2.89 9.12 45.56 0.42 3.31 16 36 H 0.08 1.61 3.69 -51.93 -0.19 1.42 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.13 7.59 -51.93 -0.39 0.73 16 LS Contribution 280.89 15.07 4.23 4.23 Total: -1.00 -28.93 280.89 -7.21 -36.14 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -5.14 Total: 4.38 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -0.37 Total: -16.73 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.44 Total: -36.42 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.48 Total: -7.86 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.93 -7.21 -36.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385759005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.215 kcal (2) G-P(sol) polarization free energy of solvation -28.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds