Wall clock time and date at job start Mon Mar 30 2020 03:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47576 * 2 1 4 4 H 1.09007 * 109.46803 * 305.00305 * 3 2 1 5 5 C 1.50698 * 109.47288 * 185.00006 * 3 2 1 6 6 H 1.07995 * 119.99745 * 245.46433 * 5 3 2 7 7 C 1.37879 * 119.99692 * 65.46470 * 5 3 2 8 8 N 1.31507 * 120.00346 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99700 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47167 * 89.99912 * 9 7 5 11 11 H 1.48494 * 109.47075 * 210.00128 * 9 7 5 12 12 H 1.48503 * 109.46884 * 329.99824 * 9 7 5 13 13 N 1.46900 * 109.46978 * 64.99829 * 3 2 1 14 14 C 1.48530 * 110.99995 * 156.15337 * 13 3 2 15 15 C 1.54942 * 103.22781 * 159.72173 * 14 13 3 16 16 C 1.54594 * 102.91932 * 322.58638 * 15 14 13 17 17 H 1.08999 * 110.31052 * 263.03935 * 16 15 14 18 18 C 1.53001 * 110.30545 * 140.87454 * 16 15 14 19 19 O 1.42894 * 109.47207 * 69.28426 * 18 16 15 20 20 C 1.47903 * 111.00211 * 273.55415 * 13 3 2 21 21 H 1.08996 * 109.92218 * 94.80306 * 20 13 3 22 22 C 1.53004 * 109.91315 * 333.70138 * 20 13 3 23 23 H 1.09001 * 109.47048 * 300.00240 * 1 2 3 24 24 H 1.09001 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47097 * 60.00019 * 1 2 3 26 26 H 1.09005 * 109.46789 * 120.00405 * 2 1 3 27 27 H 1.09001 * 109.47048 * 239.99760 * 2 1 3 28 28 H 0.97004 * 120.00257 * 179.97438 * 8 7 5 29 29 H 1.08996 * 110.66824 * 278.15523 * 14 13 3 30 30 H 1.08999 * 110.66535 * 41.28305 * 14 13 3 31 31 H 1.08995 * 110.72308 * 204.22487 * 15 14 13 32 32 H 1.09004 * 110.87457 * 81.01553 * 15 14 13 33 33 H 1.09007 * 109.46897 * 189.28347 * 18 16 15 34 34 H 1.08999 * 109.46909 * 309.28113 * 18 16 15 35 35 H 0.96708 * 113.99975 * 180.02562 * 19 18 16 36 36 H 1.09001 * 109.46955 * 66.41816 * 22 20 13 37 37 H 1.08999 * 109.46962 * 186.41012 * 22 20 13 38 38 H 1.08992 * 109.47675 * 306.41417 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1505 1.8083 0.6907 7 6 4.1391 0.9809 -1.2770 8 7 3.3981 0.5370 -2.2687 9 14 6.0008 0.9837 -1.4308 10 1 6.5408 -0.3054 -0.9291 11 1 6.3794 1.1579 -2.8561 12 1 6.5619 2.1009 -0.6294 13 7 1.6514 2.0992 1.2552 14 6 2.5567 3.2356 1.5639 15 6 1.7269 4.0913 2.5537 16 6 0.2900 3.9678 1.9968 17 1 0.0507 4.8290 1.3731 18 6 -0.7153 3.8457 3.1438 19 8 -0.7909 5.0883 3.8452 20 6 0.2954 2.6806 1.1516 21 1 -0.4408 1.9775 1.5410 22 6 -0.0202 3.0099 -0.3089 23 1 -0.3633 0.5139 0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 1.8932 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.8182 0.2115 -3.0801 29 1 3.4725 2.8805 2.0365 30 1 2.7835 3.8029 0.6612 31 1 2.0587 5.1294 2.5382 32 1 1.7857 3.6840 3.5631 33 1 -1.6969 3.5953 2.7414 34 1 -0.3922 3.0612 3.8281 35 1 -1.4106 5.0838 4.5876 36 1 -0.0856 2.0861 -0.8837 37 1 -0.9707 3.5404 -0.3645 38 1 0.7708 3.6377 -0.7190 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385759005.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:07 Heat of formation + Delta-G solvation = -61.598673 kcal Electronic energy + Delta-G solvation = -17176.807841 eV Core-core repulsion = 14632.567516 eV Total energy + Delta-G solvation = -2544.240326 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81870 -37.74127 -35.81711 -33.87399 -32.38700 -31.22089 -28.71581 -27.54279 -24.96944 -24.47138 -22.24344 -21.21564 -20.14546 -18.22974 -18.05010 -17.27815 -16.55283 -16.26554 -15.45313 -15.30164 -14.66796 -14.42236 -14.31909 -13.76026 -13.55629 -13.15116 -13.10325 -13.00537 -12.77927 -12.70335 -12.42407 -12.32635 -11.92872 -11.76951 -11.51390 -11.46425 -11.13824 -11.08558 -10.74531 -10.55226 -10.41136 -8.85315 -8.10745 -6.18791 1.39015 1.40310 1.49397 2.42219 3.19483 3.31727 3.49184 3.85221 3.89819 4.22892 4.41842 4.48360 4.52579 4.57557 4.61539 4.64723 4.74119 4.81484 4.83844 4.87744 5.02429 5.15320 5.18508 5.21988 5.26133 5.39162 5.41020 5.54801 5.57970 5.70031 5.76963 5.93649 6.26057 6.42231 6.77565 6.99450 7.00101 7.49370 8.96256 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034161 B = 0.008453 C = 0.007321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.439431 B = 3311.483554 C = 3823.838469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C 0.195 3.805 4 H 0.013 0.987 5 C -0.530 4.530 6 H 0.056 0.944 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.949 3.051 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.516 5.516 14 C 0.056 3.944 15 C -0.106 4.106 16 C -0.093 4.093 17 H 0.072 0.928 18 C 0.094 3.906 19 O -0.590 6.590 20 C 0.068 3.932 21 H 0.094 0.906 22 C -0.174 4.174 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.045 0.955 26 H 0.027 0.973 27 H 0.048 0.952 28 H 0.259 0.741 29 H 0.060 0.940 30 H 0.019 0.981 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.396 0.604 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.766 5.208 8.794 13.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.136 4.136 3 C 0.088 3.912 4 H 0.031 0.969 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.776 3.224 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 N -0.240 5.240 14 C -0.072 4.072 15 C -0.144 4.144 16 C -0.112 4.112 17 H 0.090 0.910 18 C 0.016 3.984 19 O -0.398 6.398 20 C -0.040 4.040 21 H 0.111 0.889 22 C -0.232 4.232 23 H 0.086 0.914 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.246 0.754 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -8.283 4.892 8.567 12.882 hybrid contribution 0.907 0.141 -0.900 1.286 sum -7.376 5.033 7.667 11.770 Atomic orbital electron populations 1.22061 0.96421 1.00506 1.01208 1.21297 0.94455 0.98652 0.99226 1.19534 0.93527 0.91639 0.86465 0.96915 1.21742 0.93070 1.41412 1.00656 0.92549 1.25627 1.01922 0.95257 0.95655 1.70036 1.36235 1.43465 1.05935 0.85689 0.81285 0.78434 0.77036 1.20329 1.21033 1.19574 1.64918 1.01067 1.23632 1.34409 1.22883 0.96533 0.91279 0.96536 1.22477 0.94062 0.99134 0.98682 1.22037 0.95586 0.97264 0.96280 0.90955 1.22146 0.97823 0.85583 0.92820 1.86432 1.68419 1.35208 1.49766 1.22545 0.93070 0.94504 0.93894 0.88876 1.22520 1.00635 1.01924 0.98078 0.91432 0.93511 0.93641 0.95431 0.93316 0.93144 0.92153 0.96288 0.91248 0.90758 0.92180 0.92852 0.75435 0.91647 0.90972 0.95166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.55 8.56 71.98 0.62 -4.93 16 2 C -0.10 -4.69 5.49 30.59 0.17 -4.52 16 3 C 0.20 9.72 1.49 44.17 0.07 9.79 16 4 H 0.01 0.72 4.62 -2.38 -0.01 0.71 16 5 C -0.53 -29.32 7.60 25.60 0.19 -29.13 16 6 H 0.06 3.12 5.86 -2.91 -0.02 3.10 16 7 C 0.01 0.79 5.30 84.66 0.45 1.24 16 8 N -0.92 -53.11 11.72 21.45 0.25 -52.86 16 9 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 13 N -0.52 -21.80 5.04 -837.44 -4.22 -26.02 16 14 C 0.06 2.28 5.12 86.65 0.44 2.72 16 15 C -0.11 -3.39 6.51 31.80 0.21 -3.19 16 16 C -0.09 -2.75 2.91 -9.91 -0.03 -2.78 16 17 H 0.07 2.20 7.69 -2.39 -0.02 2.18 16 18 C 0.09 2.17 6.13 71.98 0.44 2.61 16 19 O -0.59 -12.92 13.55 -148.98 -2.02 -14.94 16 20 C 0.07 2.34 2.33 45.06 0.11 2.44 16 21 H 0.09 2.93 5.52 -2.39 -0.01 2.92 16 22 C -0.17 -6.18 7.35 71.98 0.53 -5.65 16 23 H 0.07 2.34 4.94 -2.39 -0.01 2.33 16 24 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.73 5.98 -2.39 -0.01 1.72 16 26 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.05 2.64 6.42 -2.39 -0.02 2.63 16 28 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 29 H 0.06 2.57 6.97 -2.39 -0.02 2.56 16 30 H 0.02 0.85 7.76 -2.39 -0.02 0.83 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.07 2.26 7.76 -2.38 -0.02 2.24 16 33 H 0.06 1.17 8.14 -2.38 -0.02 1.16 16 34 H 0.05 1.20 7.99 -2.39 -0.02 1.18 16 35 H 0.40 4.57 9.12 -74.05 -0.68 3.89 16 36 H 0.06 2.55 3.69 -2.39 -0.01 2.54 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.03 1.21 7.59 -2.39 -0.02 1.19 16 Total: -1.00 -62.67 280.89 -0.39 -63.06 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.38 Total: 15.73 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 3.19 Total: -31.40 kcal Atomic # 7 Polarization: -74.91 SS G_CDS: -3.97 Total: -78.88 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -2.02 Total: -14.94 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -62.67 -0.39 -63.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385759005.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.465 kcal (2) G-P(sol) polarization free energy of solvation -62.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds