Wall clock time and date at job start Mon Mar 30 2020 03:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47095 * 2 1 4 4 H 1.08999 * 110.05976 * 302.41810 * 3 2 1 5 5 C 1.53994 * 109.91584 * 181.21740 * 3 2 1 6 6 H 1.08999 * 110.30637 * 120.40476 * 5 3 2 7 7 C 1.52995 * 110.31181 * 358.33574 * 5 3 2 8 8 O 1.42898 * 109.47297 * 174.99964 * 7 5 3 9 9 C 1.54592 * 105.13703 * 239.41797 * 5 3 2 10 10 C 1.54934 * 102.92590 * 338.04332 * 9 5 3 11 11 N 1.47894 * 109.91659 * 63.62690 * 3 2 1 12 12 C 1.46902 * 110.99924 * 265.19637 * 11 3 2 13 13 H 1.09007 * 109.47284 * 57.86699 * 12 11 3 14 14 C 1.53002 * 109.47228 * 177.86578 * 12 11 3 15 15 C 1.50704 * 109.47331 * 297.86732 * 12 11 3 16 16 H 1.08001 * 119.99804 * 0.02562 * 15 12 11 17 17 C 1.37872 * 119.99910 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99669 * 179.97438 * 17 15 12 19 19 Si 1.86804 * 120.00394 * 359.97438 * 17 15 12 20 20 H 1.48499 * 109.46698 * 89.99902 * 19 17 15 21 21 H 1.48494 * 109.46996 * 209.99994 * 19 17 15 22 22 H 1.48502 * 109.46775 * 330.00409 * 19 17 15 23 23 H 1.09005 * 109.47228 * 292.21635 * 1 2 3 24 24 H 1.08998 * 109.47601 * 52.21718 * 1 2 3 25 25 H 1.09001 * 109.47254 * 172.21474 * 1 2 3 26 26 H 1.08999 * 109.47373 * 240.00024 * 2 1 3 27 27 H 1.09004 * 109.47471 * 119.99522 * 2 1 3 28 28 H 1.09004 * 109.47333 * 294.99849 * 7 5 3 29 29 H 1.09002 * 109.47121 * 54.99677 * 7 5 3 30 30 H 0.96706 * 114.00168 * 179.97438 * 8 7 5 31 31 H 1.09003 * 110.72254 * 96.40187 * 9 5 3 32 32 H 1.09003 * 110.72560 * 219.50403 * 9 5 3 33 33 H 1.08999 * 110.67105 * 278.98336 * 10 9 5 34 34 H 1.08994 * 110.66822 * 155.84270 * 10 9 5 35 35 H 1.08999 * 109.46912 * 186.57952 * 14 12 11 36 36 H 1.08998 * 109.46667 * 66.58057 * 14 12 11 37 37 H 1.08995 * 109.47259 * 306.58034 * 14 12 11 38 38 H 0.97006 * 119.99902 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6471 1.9780 -0.8643 5 6 3.5795 1.4546 -0.0308 6 1 3.9361 1.9812 -0.9160 7 6 4.1224 0.0243 -0.0101 8 8 5.5436 0.0521 -0.1563 9 6 4.0030 2.2079 1.2511 10 6 2.7417 3.0381 1.5979 11 7 1.6255 2.1234 1.2458 12 6 0.3760 2.8699 1.0471 13 1 -0.4045 2.1884 0.7086 14 6 -0.0480 3.5154 2.3679 15 6 0.5909 3.9422 0.0101 16 1 1.5587 4.0573 -0.4551 17 6 -0.4484 4.7755 -0.3454 18 7 -0.2607 5.7116 -1.2499 19 14 -2.1231 4.5750 0.4577 20 1 -2.1914 5.4195 1.6773 21 1 -3.1822 4.9945 -0.4949 22 1 -2.3266 3.1517 0.8292 23 1 -0.3634 0.3886 0.9514 24 1 -0.3634 0.6296 -0.8122 25 1 -0.3634 -1.0182 -0.1392 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8638 -0.4488 0.9372 29 1 3.6836 -0.5427 -0.8311 30 1 5.9566 -0.8223 -0.1516 31 1 4.2350 1.5059 2.0521 32 1 4.8542 2.8592 1.0524 33 1 2.7004 3.9452 0.9951 34 1 2.7203 3.2796 2.6605 35 1 -1.0316 3.9702 2.2506 36 1 0.6756 4.2813 2.6467 37 1 -0.0902 2.7544 3.1471 38 1 -0.9920 6.2977 -1.5003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385907016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:35 Heat of formation + Delta-G solvation = -45.328580 kcal Electronic energy + Delta-G solvation = -17272.729853 eV Core-core repulsion = 14729.195051 eV Total energy + Delta-G solvation = -2543.534801 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.28141 -36.48933 -33.96991 -32.67336 -31.67796 -28.93292 -27.57068 -25.03313 -24.21344 -22.99210 -20.94762 -19.49810 -18.43116 -17.24691 -16.64169 -15.63004 -15.02984 -14.39911 -14.26133 -13.93759 -13.15359 -13.03587 -12.73514 -12.38256 -12.17247 -12.01278 -11.79254 -11.35696 -11.24617 -10.98278 -10.70347 -10.62204 -10.27448 -10.18141 -9.99509 -9.92336 -9.68675 -9.56717 -9.42956 -9.22329 -8.56804 -7.23060 -6.11474 -4.11076 3.25819 3.35820 3.37896 4.37588 4.41403 4.92248 5.15784 5.18797 5.22834 5.46929 5.64988 5.70822 5.73909 5.81469 5.95576 6.13035 6.21337 6.29886 6.40549 6.43145 6.44582 6.51030 6.53918 6.60525 6.67407 6.75244 6.81652 6.93280 6.97866 7.10695 7.25789 7.59132 7.76307 8.03453 8.14553 8.45388 8.90631 9.52267 11.01304 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033742 B = 0.009008 C = 0.008467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.614874 B = 3107.738752 C = 3306.242019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.073 3.927 4 H 0.077 0.923 5 C -0.093 4.093 6 H 0.075 0.925 7 C 0.084 3.916 8 O -0.577 6.577 9 C -0.110 4.110 10 C 0.034 3.966 11 N -0.503 5.503 12 C 0.158 3.842 13 H 0.049 0.951 14 C -0.142 4.142 15 C -0.541 4.541 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.898 5.898 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.299 1.299 22 H -0.266 1.266 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.039 0.961 26 H 0.054 0.946 27 H 0.060 0.940 28 H 0.048 0.952 29 H 0.046 0.954 30 H 0.371 0.629 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.037 0.963 36 H 0.050 0.950 37 H 0.036 0.964 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 -11.133 3.742 12.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C -0.036 4.036 4 H 0.095 0.905 5 C -0.112 4.112 6 H 0.093 0.907 7 C 0.007 3.993 8 O -0.382 6.382 9 C -0.148 4.148 10 C -0.094 4.094 11 N -0.227 5.227 12 C 0.050 3.950 13 H 0.067 0.933 14 C -0.200 4.200 15 C -0.580 4.580 16 H 0.096 0.904 17 C -0.129 4.129 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.207 1.207 21 H -0.226 1.226 22 H -0.191 1.191 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.217 0.783 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.915 -10.708 4.038 12.455 hybrid contribution -0.820 0.176 -0.283 0.886 sum 4.095 -10.532 3.755 11.907 Atomic orbital electron populations 1.21845 0.96106 0.99904 1.02900 1.21597 0.96200 0.96388 1.00355 1.22307 0.91411 0.94853 0.95045 0.90484 1.21976 0.95557 0.94343 0.99361 0.90676 1.22510 0.79818 0.97601 0.99379 1.86505 1.21189 1.33631 1.96855 1.22455 0.97604 0.98449 0.96337 1.23175 0.89470 0.96337 1.00376 1.64970 1.03238 1.26138 1.28324 1.20008 0.89267 0.93000 0.92770 0.93304 1.22096 0.99624 0.99619 0.98653 1.21601 0.99158 1.15317 1.21911 0.90441 1.24969 0.98658 0.94726 0.94549 1.69921 1.32584 1.19474 1.31647 0.86851 0.84055 0.78976 0.78271 1.20690 1.22646 1.19083 0.91719 0.92583 0.94241 0.92736 0.92094 0.93345 0.93547 0.78301 0.91953 0.92077 0.91420 0.91684 0.94477 0.93098 0.94472 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.48 37.15 0.31 -2.17 16 2 C -0.11 -1.70 4.44 -26.73 -0.12 -1.81 16 3 C 0.07 1.37 2.29 -66.64 -0.15 1.21 16 4 H 0.08 1.70 6.45 -51.93 -0.33 1.37 16 5 C -0.09 -1.58 3.26 -89.27 -0.29 -1.87 16 6 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 7 C 0.08 1.16 5.16 37.16 0.19 1.35 16 8 O -0.58 -7.70 13.55 -35.23 -0.48 -8.18 16 9 C -0.11 -1.87 6.50 -24.87 -0.16 -2.04 16 10 C 0.03 0.67 5.39 -1.90 -0.01 0.66 16 11 N -0.50 -10.17 4.73 -216.04 -1.02 -11.20 16 12 C 0.16 3.63 1.61 -68.86 -0.11 3.52 16 13 H 0.05 1.16 4.28 -51.92 -0.22 0.94 16 14 C -0.14 -3.12 8.40 37.16 0.31 -2.81 16 15 C -0.54 -14.56 6.95 -34.44 -0.24 -14.80 16 16 H 0.08 2.28 6.26 -52.49 -0.33 1.95 16 17 C 0.07 2.07 5.45 -17.82 -0.10 1.98 16 18 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 19 Si 0.89 21.83 24.31 -169.99 -4.13 17.70 16 20 H -0.28 -6.78 6.93 56.52 0.39 -6.39 16 21 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.27 -6.25 6.53 56.52 0.37 -5.88 16 23 H 0.06 1.16 6.53 -51.93 -0.34 0.82 16 24 H 0.06 1.01 7.95 -51.93 -0.41 0.59 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.76 6.60 -51.93 -0.34 0.42 16 27 H 0.06 0.91 6.94 -51.93 -0.36 0.55 16 28 H 0.05 0.64 6.98 -51.93 -0.36 0.28 16 29 H 0.05 0.59 6.38 -51.93 -0.33 0.26 16 30 H 0.37 3.04 9.12 45.56 0.42 3.46 16 31 H 0.06 1.00 7.76 -51.93 -0.40 0.59 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 1.53 5.91 -51.93 -0.31 1.22 16 34 H 0.06 1.21 7.85 -51.93 -0.41 0.80 16 35 H 0.04 0.84 3.48 -51.93 -0.18 0.66 16 36 H 0.05 1.11 7.39 -51.93 -0.38 0.72 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 275.80 15.07 4.16 4.16 Total: -1.00 -29.90 275.80 -6.23 -36.13 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.17 Total: 4.47 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -0.36 Total: -16.78 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.25 Total: -37.50 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.48 Total: -8.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.13 Total: 17.70 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.90 -6.23 -36.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385907016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.194 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds