Wall clock time and date at job start Mon Mar 30 2020 03:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47095 * 2 1 4 4 H 1.08999 * 110.05976 * 302.41810 * 3 2 1 5 5 C 1.53994 * 109.91584 * 181.21740 * 3 2 1 6 6 H 1.08999 * 110.30637 * 120.40476 * 5 3 2 7 7 C 1.52995 * 110.31181 * 358.33574 * 5 3 2 8 8 O 1.42898 * 109.47297 * 174.99964 * 7 5 3 9 9 C 1.54592 * 105.13703 * 239.41797 * 5 3 2 10 10 C 1.54934 * 102.92590 * 338.04332 * 9 5 3 11 11 N 1.47894 * 109.91659 * 63.62690 * 3 2 1 12 12 C 1.46902 * 110.99924 * 265.19637 * 11 3 2 13 13 H 1.09007 * 109.47284 * 57.86699 * 12 11 3 14 14 C 1.53002 * 109.47228 * 177.86578 * 12 11 3 15 15 C 1.50704 * 109.47331 * 297.86732 * 12 11 3 16 16 H 1.08001 * 119.99804 * 0.02562 * 15 12 11 17 17 C 1.37872 * 119.99910 * 179.97438 * 15 12 11 18 18 N 1.31517 * 119.99669 * 179.97438 * 17 15 12 19 19 Si 1.86804 * 120.00394 * 359.97438 * 17 15 12 20 20 H 1.48499 * 109.46698 * 89.99902 * 19 17 15 21 21 H 1.48494 * 109.46996 * 209.99994 * 19 17 15 22 22 H 1.48502 * 109.46775 * 330.00409 * 19 17 15 23 23 H 1.09005 * 109.47228 * 292.21635 * 1 2 3 24 24 H 1.08998 * 109.47601 * 52.21718 * 1 2 3 25 25 H 1.09001 * 109.47254 * 172.21474 * 1 2 3 26 26 H 1.08999 * 109.47373 * 240.00024 * 2 1 3 27 27 H 1.09004 * 109.47471 * 119.99522 * 2 1 3 28 28 H 1.09004 * 109.47333 * 294.99849 * 7 5 3 29 29 H 1.09002 * 109.47121 * 54.99677 * 7 5 3 30 30 H 0.96706 * 114.00168 * 179.97438 * 8 7 5 31 31 H 1.09003 * 110.72254 * 96.40187 * 9 5 3 32 32 H 1.09003 * 110.72560 * 219.50403 * 9 5 3 33 33 H 1.08999 * 110.67105 * 278.98336 * 10 9 5 34 34 H 1.08994 * 110.66822 * 155.84270 * 10 9 5 35 35 H 1.08999 * 109.46912 * 186.57952 * 14 12 11 36 36 H 1.08998 * 109.46667 * 66.58057 * 14 12 11 37 37 H 1.08995 * 109.47259 * 306.58034 * 14 12 11 38 38 H 0.97006 * 119.99902 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6471 1.9780 -0.8643 5 6 3.5795 1.4546 -0.0308 6 1 3.9361 1.9812 -0.9160 7 6 4.1224 0.0243 -0.0101 8 8 5.5436 0.0521 -0.1563 9 6 4.0030 2.2079 1.2511 10 6 2.7417 3.0381 1.5979 11 7 1.6255 2.1234 1.2458 12 6 0.3760 2.8699 1.0471 13 1 -0.4045 2.1884 0.7086 14 6 -0.0480 3.5154 2.3679 15 6 0.5909 3.9422 0.0101 16 1 1.5587 4.0573 -0.4551 17 6 -0.4484 4.7755 -0.3454 18 7 -0.2607 5.7116 -1.2499 19 14 -2.1231 4.5750 0.4577 20 1 -2.1914 5.4195 1.6773 21 1 -3.1822 4.9945 -0.4949 22 1 -2.3266 3.1517 0.8292 23 1 -0.3634 0.3886 0.9514 24 1 -0.3634 0.6296 -0.8122 25 1 -0.3634 -1.0182 -0.1392 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8638 -0.4488 0.9372 29 1 3.6836 -0.5427 -0.8311 30 1 5.9566 -0.8223 -0.1516 31 1 4.2350 1.5059 2.0521 32 1 4.8542 2.8592 1.0524 33 1 2.7004 3.9452 0.9951 34 1 2.7203 3.2796 2.6605 35 1 -1.0316 3.9702 2.2506 36 1 0.6756 4.2813 2.6467 37 1 -0.0902 2.7544 3.1471 38 1 -0.9920 6.2977 -1.5003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385907016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:35 Heat of formation + Delta-G solvation = -69.033614 kcal Electronic energy + Delta-G solvation = -17273.757780 eV Core-core repulsion = 14729.195051 eV Total energy + Delta-G solvation = -2544.562729 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.78381 -37.68595 -35.66686 -34.10817 -33.61329 -30.49749 -29.03465 -27.09819 -25.52138 -24.46735 -22.45356 -21.29113 -19.87382 -18.68479 -18.27943 -17.28224 -16.61124 -15.94042 -15.67323 -15.44022 -14.85567 -14.50911 -14.29813 -14.01781 -13.87911 -13.53984 -13.25142 -13.00035 -12.76870 -12.66865 -12.40799 -11.94898 -11.86409 -11.78251 -11.66197 -11.42847 -11.35834 -11.15199 -11.03532 -10.72893 -10.59472 -9.00174 -8.30913 -6.33308 1.28995 1.33644 1.43954 2.30348 3.05088 3.33715 3.38107 3.80846 3.85939 4.20286 4.33702 4.44239 4.49133 4.52891 4.58711 4.65594 4.72053 4.80119 4.83410 4.89293 4.93344 5.01828 5.10966 5.16820 5.18424 5.23967 5.31910 5.38348 5.39837 5.53389 5.60596 5.62927 6.18519 6.34715 6.41881 6.74776 7.02337 7.33257 8.85711 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.033742 B = 0.009008 C = 0.008467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.614874 B = 3107.738752 C = 3306.242019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 C 0.070 3.930 4 H 0.030 0.970 5 C -0.096 4.096 6 H 0.050 0.950 7 C 0.095 3.905 8 O -0.594 6.594 9 C -0.100 4.100 10 C 0.033 3.967 11 N -0.492 5.492 12 C 0.160 3.840 13 H 0.049 0.951 14 C -0.140 4.140 15 C -0.529 4.529 16 H 0.035 0.965 17 C 0.013 3.987 18 N -0.950 5.950 19 Si 0.947 3.053 20 H -0.270 1.270 21 H -0.302 1.302 22 H -0.244 1.244 23 H 0.050 0.950 24 H 0.029 0.971 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.396 0.604 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.025 0.975 34 H 0.078 0.922 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.200 -13.942 5.553 15.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 C -0.039 4.039 4 H 0.048 0.952 5 C -0.115 4.115 6 H 0.069 0.931 7 C 0.018 3.982 8 O -0.403 6.403 9 C -0.138 4.138 10 C -0.095 4.095 11 N -0.215 5.215 12 C 0.052 3.948 13 H 0.067 0.933 14 C -0.197 4.197 15 C -0.568 4.568 16 H 0.053 0.947 17 C -0.184 4.184 18 N -0.591 5.591 19 Si 0.774 3.226 20 H -0.196 1.196 21 H -0.230 1.230 22 H -0.168 1.168 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.246 0.754 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.901 -13.557 5.864 15.563 hybrid contribution -0.672 1.051 -0.909 1.544 sum 4.229 -12.506 4.955 14.101 Atomic orbital electron populations 1.21818 0.96637 1.01159 1.01046 1.21588 0.95659 0.94104 1.02435 1.22315 0.92828 0.96244 0.92477 0.95209 1.21933 0.94335 0.96914 0.98319 0.93145 1.22323 0.80283 0.94782 1.00860 1.86441 1.20823 1.36093 1.96913 1.22400 0.96104 0.98365 0.96933 1.23155 0.90937 0.95168 1.00273 1.65037 1.02432 1.25251 1.28806 1.19920 0.90785 0.91860 0.92265 0.93303 1.22024 0.99022 1.00176 0.98497 1.21837 0.97185 1.15821 1.21961 0.94670 1.25811 1.02758 0.94562 0.95289 1.70075 1.33849 1.21147 1.33995 0.85885 0.79090 0.80172 0.77431 1.19582 1.22979 1.16835 0.93071 0.95181 0.91124 0.90486 0.89975 0.91648 0.92065 0.75435 0.89729 0.92005 0.95616 0.90387 0.94945 0.93697 0.91507 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 8.48 71.98 0.61 -3.99 16 2 C -0.10 -2.89 4.44 30.59 0.14 -2.75 16 3 C 0.07 2.62 2.29 45.06 0.10 2.72 16 4 H 0.03 1.38 6.45 -2.39 -0.02 1.37 16 5 C -0.10 -3.17 3.26 -9.92 -0.03 -3.20 16 6 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 7 C 0.09 2.30 5.16 71.98 0.37 2.67 16 8 O -0.59 -13.97 13.55 -148.98 -2.02 -15.99 16 9 C -0.10 -3.28 6.50 31.80 0.21 -3.07 16 10 C 0.03 1.29 5.39 86.65 0.47 1.75 16 11 N -0.49 -19.55 4.73 -837.42 -3.96 -23.51 16 12 C 0.16 7.35 1.61 44.17 0.07 7.42 16 13 H 0.05 2.27 4.28 -2.38 -0.01 2.26 16 14 C -0.14 -5.88 8.40 71.98 0.60 -5.28 16 15 C -0.53 -29.62 6.95 25.60 0.18 -29.44 16 16 H 0.04 2.23 6.26 -2.91 -0.02 2.21 16 17 C 0.01 0.77 5.45 84.65 0.46 1.23 16 18 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 19 Si 0.95 45.17 24.31 68.60 1.67 46.84 16 20 H -0.27 -12.36 6.93 99.48 0.69 -11.67 16 21 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 22 H -0.24 -10.73 6.53 99.48 0.65 -10.08 16 23 H 0.05 1.70 6.53 -2.38 -0.02 1.68 16 24 H 0.03 1.05 7.95 -2.39 -0.02 1.03 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 1.89 6.60 -2.39 -0.02 1.88 16 27 H 0.08 2.08 6.94 -2.38 -0.02 2.06 16 28 H 0.07 1.40 6.98 -2.38 -0.02 1.38 16 29 H 0.06 1.31 6.38 -2.39 -0.02 1.30 16 30 H 0.40 4.97 9.12 -74.05 -0.68 4.30 16 31 H 0.08 2.43 7.76 -2.39 -0.02 2.41 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.03 1.22 5.91 -2.39 -0.01 1.21 16 34 H 0.08 2.82 7.85 -2.39 -0.02 2.80 16 35 H 0.03 1.39 3.48 -2.39 -0.01 1.38 16 36 H 0.04 1.91 7.39 -2.39 -0.02 1.89 16 37 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.26 15.63 8.31 -92.70 -0.77 14.86 16 Total: -1.00 -67.18 275.80 -0.53 -67.71 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.30 Total: 16.45 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 3.18 Total: -31.95 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -3.66 Total: -83.07 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -2.02 Total: -15.99 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.84 kcal Total: -67.18 -0.53 -67.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385907016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.321 kcal (2) G-P(sol) polarization free energy of solvation -67.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds