Wall clock time and date at job start Mon Mar 30 2020 03:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 H 1.09000 * 109.90729 * 57.86847 * 3 2 1 5 5 C 1.54000 * 109.91609 * 296.76661 * 3 2 1 6 6 H 1.09002 * 110.30745 * 0.88704 * 5 3 2 7 7 C 1.53001 * 110.30630 * 122.95372 * 5 3 2 8 8 O 1.42906 * 109.47090 * 185.00097 * 7 5 3 9 9 C 1.54593 * 105.13916 * 241.86855 * 5 3 2 10 10 C 1.54940 * 102.92005 * 21.95808 * 9 5 3 11 11 N 1.47897 * 109.91821 * 178.97332 * 3 2 1 12 12 C 1.46900 * 111.00120 * 333.50372 * 11 3 2 13 13 H 1.09007 * 109.46386 * 53.11643 * 12 11 3 14 14 C 1.53003 * 109.47175 * 173.10774 * 12 11 3 15 15 C 1.50694 * 109.47435 * 293.11610 * 12 11 3 16 16 H 1.07995 * 120.00145 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00169 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00356 * 179.97438 * 17 15 12 19 19 Si 1.86799 * 119.99819 * 359.97438 * 17 15 12 20 20 H 1.48506 * 109.47186 * 90.00311 * 19 17 15 21 21 H 1.48493 * 109.47407 * 210.00174 * 19 17 15 22 22 H 1.48498 * 109.47385 * 330.00445 * 19 17 15 23 23 H 1.09007 * 109.46666 * 176.07906 * 1 2 3 24 24 H 1.08993 * 109.47029 * 296.07838 * 1 2 3 25 25 H 1.09002 * 109.47256 * 56.08023 * 1 2 3 26 26 H 1.08998 * 109.47683 * 120.00004 * 2 1 3 27 27 H 1.09006 * 109.47143 * 240.00303 * 2 1 3 28 28 H 1.08995 * 109.47335 * 304.99712 * 7 5 3 29 29 H 1.09002 * 109.47311 * 65.00418 * 7 5 3 30 30 H 0.96696 * 114.00155 * 180.02562 * 8 7 5 31 31 H 1.09006 * 110.72100 * 140.31619 * 9 5 3 32 32 H 1.09001 * 110.72511 * 263.59975 * 9 5 3 33 33 H 1.09003 * 110.66515 * 81.02515 * 10 9 5 34 34 H 1.08999 * 110.66204 * 203.98002 * 10 9 5 35 35 H 1.09002 * 109.47343 * 294.55735 * 14 12 11 36 36 H 1.09000 * 109.46670 * 54.55578 * 14 12 11 37 37 H 1.08994 * 109.47023 * 174.55501 * 14 12 11 38 38 H 0.96993 * 120.00309 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6498 1.9741 0.8679 5 6 1.6001 2.1545 -1.2927 6 1 1.0105 1.4803 -1.9141 7 6 0.7923 3.4103 -0.9588 8 8 0.2953 3.9919 -2.1658 9 6 2.9148 2.5372 -2.0103 10 6 3.9422 1.5508 -1.4004 11 7 3.5187 1.4542 0.0249 12 6 4.0443 0.2347 0.6530 13 1 3.6136 -0.6398 0.1651 14 6 5.5670 0.2016 0.5074 15 6 3.6790 0.2250 2.1150 16 1 3.1134 1.0432 2.5357 17 6 4.0678 -0.8278 2.9158 18 7 3.7495 -0.8360 4.1918 19 14 5.0468 -2.2427 2.1884 20 1 6.4982 -1.9480 2.2974 21 1 4.7382 -3.4913 2.9305 22 1 4.6824 -2.4135 0.7590 23 1 -0.3633 -1.0254 -0.0703 24 1 -0.3633 0.4517 0.9230 25 1 -0.3634 0.5735 -0.8528 26 1 1.8934 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8901 28 1 -0.0441 3.1432 -0.3130 29 1 1.4324 4.1284 -0.4462 30 1 -0.2272 4.7941 -2.0298 31 1 2.8255 2.3850 -3.0860 32 1 3.1902 3.5679 -1.7871 33 1 3.8780 0.5780 -1.8881 34 1 4.9528 1.9520 -1.4769 35 1 5.8294 0.1109 -0.5466 36 1 5.9904 1.1220 0.9094 37 1 5.9659 -0.6517 1.0559 38 1 4.0226 -1.5768 4.7551 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385907018.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:39 Heat of formation + Delta-G solvation = -44.943113 kcal Electronic energy + Delta-G solvation = -17184.077860 eV Core-core repulsion = 14640.559774 eV Total energy + Delta-G solvation = -2543.518086 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.41665 -36.57205 -33.97475 -32.61384 -31.64413 -28.98729 -27.91729 -25.20967 -24.26720 -22.04251 -21.59182 -19.83860 -18.52041 -17.07205 -16.50386 -15.54572 -15.32968 -14.62307 -14.19020 -13.99037 -13.41110 -13.01445 -12.72882 -12.52548 -12.28549 -12.17132 -11.70834 -11.51145 -11.12475 -10.85109 -10.75949 -10.61271 -10.45130 -10.26608 -10.18428 -10.12879 -9.76445 -9.65007 -9.45488 -9.05832 -8.56041 -7.33946 -6.07141 -4.04116 3.25500 3.35919 3.37720 4.32529 4.38919 4.82075 5.06304 5.12882 5.23976 5.39777 5.61498 5.64853 5.70641 5.81436 5.83595 5.95784 5.99790 6.11539 6.26304 6.29731 6.31275 6.41435 6.45568 6.50980 6.52475 6.58500 6.67312 6.80546 6.96976 7.18276 7.25476 7.61376 7.70240 7.92522 8.02802 8.66250 9.01709 9.55160 11.05703 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034813 B = 0.008889 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.095223 B = 3149.341195 C = 3496.458434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.155 4.155 3 C 0.093 3.907 4 H 0.082 0.918 5 C -0.097 4.097 6 H 0.078 0.922 7 C 0.086 3.914 8 O -0.577 6.577 9 C -0.110 4.110 10 C 0.028 3.972 11 N -0.495 5.495 12 C 0.167 3.833 13 H 0.010 0.990 14 C -0.148 4.148 15 C -0.496 4.496 16 H 0.080 0.920 17 C 0.070 3.930 18 N -0.899 5.899 19 Si 0.883 3.117 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.269 1.269 23 H 0.046 0.954 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.107 0.893 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.373 0.627 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.073 0.927 35 H 0.026 0.974 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.528 5.186 -10.744 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.193 4.193 3 C -0.016 4.016 4 H 0.100 0.900 5 C -0.117 4.117 6 H 0.096 0.904 7 C 0.008 3.992 8 O -0.382 6.382 9 C -0.148 4.148 10 C -0.100 4.100 11 N -0.219 5.219 12 C 0.060 3.940 13 H 0.028 0.972 14 C -0.205 4.205 15 C -0.534 4.534 16 H 0.098 0.902 17 C -0.132 4.132 18 N -0.537 5.537 19 Si 0.713 3.287 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.194 1.194 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.125 0.875 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.219 0.781 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.975 5.001 -10.504 12.294 hybrid contribution 0.066 -1.117 -0.396 1.187 sum -3.908 3.883 -10.900 12.213 Atomic orbital electron populations 1.21762 0.96829 1.00746 1.01060 1.22298 0.95038 0.98168 1.03804 1.22123 0.89267 0.94687 0.95541 0.90019 1.22154 0.96148 0.95589 0.97760 0.90365 1.22321 0.96446 0.94724 0.85680 1.86472 1.73342 1.45495 1.32857 1.22449 0.94150 0.99654 0.98533 1.23296 0.98795 0.97285 0.90634 1.65093 1.05641 1.39378 1.11759 1.19987 0.90892 0.87105 0.96061 0.97224 1.22206 0.99137 1.01244 0.97931 1.20879 1.34812 1.07001 0.90716 0.90164 1.24920 0.95793 0.97810 0.94680 1.69875 1.46802 1.32110 1.04914 0.86938 0.80516 0.81891 0.79329 1.20607 1.22532 1.19396 0.93488 0.92810 0.93571 0.87473 0.93588 0.93741 0.93198 0.78079 0.91986 0.91233 0.94825 0.90871 0.95511 0.92223 0.93902 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.75 37.16 0.36 -1.96 16 2 C -0.15 -2.94 3.93 -26.73 -0.11 -3.04 16 3 C 0.09 1.73 2.31 -66.64 -0.15 1.58 16 4 H 0.08 1.63 7.68 -51.93 -0.40 1.23 16 5 C -0.10 -1.53 2.33 -89.26 -0.21 -1.74 16 6 H 0.08 1.24 6.55 -51.93 -0.34 0.90 16 7 C 0.09 1.17 6.13 37.16 0.23 1.40 16 8 O -0.58 -7.31 13.55 -35.23 -0.48 -7.78 16 9 C -0.11 -1.69 6.50 -24.87 -0.16 -1.86 16 10 C 0.03 0.49 5.27 -1.63 -0.01 0.49 16 11 N -0.50 -10.25 5.10 -215.63 -1.10 -11.35 16 12 C 0.17 3.91 1.02 -68.87 -0.07 3.84 16 13 H 0.01 0.25 4.96 -51.93 -0.26 -0.01 16 14 C -0.15 -3.28 8.30 37.16 0.31 -2.97 16 15 C -0.50 -13.53 7.21 -34.44 -0.25 -13.77 16 16 H 0.08 2.41 7.94 -52.49 -0.42 1.99 16 17 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 18 N -0.90 -27.01 13.96 55.43 0.77 -26.23 16 19 Si 0.88 21.80 24.41 -169.99 -4.15 17.65 16 20 H -0.28 -6.77 6.83 56.52 0.39 -6.39 16 21 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.27 -6.40 6.53 56.52 0.37 -6.03 16 23 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.66 6.56 -51.93 -0.34 0.32 16 26 H 0.11 2.43 5.31 -51.93 -0.28 2.16 16 27 H 0.05 0.86 7.76 -51.93 -0.40 0.46 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.68 7.99 -51.93 -0.42 0.27 16 30 H 0.37 2.92 9.12 45.56 0.42 3.33 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.05 7.76 -51.93 -0.40 0.65 16 33 H 0.03 0.59 8.03 -51.93 -0.42 0.18 16 34 H 0.07 1.23 7.79 -51.93 -0.40 0.82 16 35 H 0.03 0.51 7.17 -51.93 -0.37 0.14 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.04 0.99 3.21 -51.93 -0.17 0.82 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -30.08 282.57 -6.34 -36.42 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.49 Total: 3.19 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -0.16 Total: -16.16 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: -0.33 Total: -37.58 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.48 Total: -7.78 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.15 Total: 17.65 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.08 -6.34 -36.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385907018.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.519 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds