Wall clock time and date at job start Mon Mar 30 2020 03:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 H 1.09000 * 109.90729 * 57.86847 * 3 2 1 5 5 C 1.54000 * 109.91609 * 296.76661 * 3 2 1 6 6 H 1.09002 * 110.30745 * 0.88704 * 5 3 2 7 7 C 1.53001 * 110.30630 * 122.95372 * 5 3 2 8 8 O 1.42906 * 109.47090 * 185.00097 * 7 5 3 9 9 C 1.54593 * 105.13916 * 241.86855 * 5 3 2 10 10 C 1.54940 * 102.92005 * 21.95808 * 9 5 3 11 11 N 1.47897 * 109.91821 * 178.97332 * 3 2 1 12 12 C 1.46900 * 111.00120 * 333.50372 * 11 3 2 13 13 H 1.09007 * 109.46386 * 53.11643 * 12 11 3 14 14 C 1.53003 * 109.47175 * 173.10774 * 12 11 3 15 15 C 1.50694 * 109.47435 * 293.11610 * 12 11 3 16 16 H 1.07995 * 120.00145 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00169 * 180.02562 * 15 12 11 18 18 N 1.31514 * 120.00356 * 179.97438 * 17 15 12 19 19 Si 1.86799 * 119.99819 * 359.97438 * 17 15 12 20 20 H 1.48506 * 109.47186 * 90.00311 * 19 17 15 21 21 H 1.48493 * 109.47407 * 210.00174 * 19 17 15 22 22 H 1.48498 * 109.47385 * 330.00445 * 19 17 15 23 23 H 1.09007 * 109.46666 * 176.07906 * 1 2 3 24 24 H 1.08993 * 109.47029 * 296.07838 * 1 2 3 25 25 H 1.09002 * 109.47256 * 56.08023 * 1 2 3 26 26 H 1.08998 * 109.47683 * 120.00004 * 2 1 3 27 27 H 1.09006 * 109.47143 * 240.00303 * 2 1 3 28 28 H 1.08995 * 109.47335 * 304.99712 * 7 5 3 29 29 H 1.09002 * 109.47311 * 65.00418 * 7 5 3 30 30 H 0.96696 * 114.00155 * 180.02562 * 8 7 5 31 31 H 1.09006 * 110.72100 * 140.31619 * 9 5 3 32 32 H 1.09001 * 110.72511 * 263.59975 * 9 5 3 33 33 H 1.09003 * 110.66515 * 81.02515 * 10 9 5 34 34 H 1.08999 * 110.66204 * 203.98002 * 10 9 5 35 35 H 1.09002 * 109.47343 * 294.55735 * 14 12 11 36 36 H 1.09000 * 109.46670 * 54.55578 * 14 12 11 37 37 H 1.08994 * 109.47023 * 174.55501 * 14 12 11 38 38 H 0.96993 * 120.00309 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6498 1.9741 0.8679 5 6 1.6001 2.1545 -1.2927 6 1 1.0105 1.4803 -1.9141 7 6 0.7923 3.4103 -0.9588 8 8 0.2953 3.9919 -2.1658 9 6 2.9148 2.5372 -2.0103 10 6 3.9422 1.5508 -1.4004 11 7 3.5187 1.4542 0.0249 12 6 4.0443 0.2347 0.6530 13 1 3.6136 -0.6398 0.1651 14 6 5.5670 0.2016 0.5074 15 6 3.6790 0.2250 2.1150 16 1 3.1134 1.0432 2.5357 17 6 4.0678 -0.8278 2.9158 18 7 3.7495 -0.8360 4.1918 19 14 5.0468 -2.2427 2.1884 20 1 6.4982 -1.9480 2.2974 21 1 4.7382 -3.4913 2.9305 22 1 4.6824 -2.4135 0.7590 23 1 -0.3633 -1.0254 -0.0703 24 1 -0.3633 0.4517 0.9230 25 1 -0.3634 0.5735 -0.8528 26 1 1.8934 -0.5138 0.8899 27 1 1.8934 -0.5138 -0.8901 28 1 -0.0441 3.1432 -0.3130 29 1 1.4324 4.1284 -0.4462 30 1 -0.2272 4.7941 -2.0298 31 1 2.8255 2.3850 -3.0860 32 1 3.1902 3.5679 -1.7871 33 1 3.8780 0.5780 -1.8881 34 1 4.9528 1.9520 -1.4769 35 1 5.8294 0.1109 -0.5466 36 1 5.9904 1.1220 0.9094 37 1 5.9659 -0.6517 1.0559 38 1 4.0226 -1.5768 4.7551 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385907018.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:38 Heat of formation + Delta-G solvation = -68.654661 kcal Electronic energy + Delta-G solvation = -17185.106070 eV Core-core repulsion = 14640.559774 eV Total energy + Delta-G solvation = -2544.546296 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.87863 -37.69946 -35.69676 -34.12816 -33.48020 -30.52592 -29.31029 -27.13472 -25.64839 -23.42043 -23.27515 -21.18747 -20.17599 -18.62867 -18.01025 -17.24571 -16.59650 -16.35402 -15.70103 -15.32315 -14.79378 -14.74906 -14.38752 -14.12124 -13.92132 -13.69406 -13.13087 -12.87718 -12.70082 -12.45720 -12.38207 -12.11402 -12.00684 -11.95280 -11.74085 -11.43668 -11.36264 -11.19625 -11.01718 -10.78710 -10.70444 -8.96854 -8.26126 -6.26204 1.28757 1.33639 1.43186 2.31690 3.07088 3.26803 3.32879 3.79094 3.84880 4.12787 4.26319 4.37781 4.47660 4.51177 4.54613 4.56907 4.61967 4.66625 4.73137 4.81121 4.84051 4.90316 4.97778 5.03772 5.12947 5.17778 5.25748 5.36712 5.42691 5.51744 5.58881 5.70021 6.05778 6.34211 6.69939 6.78430 6.94900 7.36634 8.90566 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.034813 B = 0.008889 C = 0.008006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.095223 B = 3149.341195 C = 3496.458434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.150 4.150 3 C 0.092 3.908 4 H 0.058 0.942 5 C -0.091 4.091 6 H 0.083 0.917 7 C 0.093 3.907 8 O -0.585 6.585 9 C -0.101 4.101 10 C 0.027 3.973 11 N -0.515 5.515 12 C 0.173 3.827 13 H 0.006 0.994 14 C -0.146 4.146 15 C -0.487 4.487 16 H 0.036 0.964 17 C 0.014 3.986 18 N -0.948 5.948 19 Si 0.942 3.058 20 H -0.268 1.268 21 H -0.300 1.300 22 H -0.252 1.252 23 H 0.056 0.944 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.396 0.604 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.033 0.967 38 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 5.361 -13.489 15.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.189 4.189 3 C -0.017 4.017 4 H 0.077 0.923 5 C -0.110 4.110 6 H 0.101 0.899 7 C 0.015 3.985 8 O -0.393 6.393 9 C -0.139 4.139 10 C -0.101 4.101 11 N -0.239 5.239 12 C 0.065 3.935 13 H 0.023 0.977 14 C -0.203 4.203 15 C -0.525 4.525 16 H 0.054 0.946 17 C -0.183 4.183 18 N -0.589 5.589 19 Si 0.770 3.230 20 H -0.195 1.195 21 H -0.228 1.228 22 H -0.176 1.176 23 H 0.075 0.925 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.245 0.755 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.101 0.899 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.895 5.208 -13.277 14.785 hybrid contribution -0.041 -1.059 0.460 1.155 sum -3.936 4.150 -12.818 14.036 Atomic orbital electron populations 1.21695 0.94448 1.01793 1.01713 1.22154 0.97206 0.97852 1.01674 1.22086 0.88318 0.94723 0.96559 0.92343 1.22043 0.96832 0.96362 0.95777 0.89865 1.22118 0.96445 0.93875 0.86095 1.86403 1.73831 1.46914 1.32140 1.22423 0.92898 0.99153 0.99438 1.23385 0.99987 0.98155 0.88529 1.64966 1.06957 1.37797 1.14181 1.19768 0.91986 0.88259 0.93478 0.97677 1.22136 0.97670 1.00615 0.99901 1.21023 1.33236 1.05234 0.93014 0.94579 1.25684 0.97154 1.00587 0.94885 1.70024 1.48973 1.33315 1.06571 0.85962 0.79427 0.78367 0.79286 1.19451 1.22766 1.17607 0.92496 0.93400 0.91393 0.91871 0.93173 0.93182 0.93445 0.75493 0.89963 0.90887 0.94559 0.89924 0.92260 0.92641 0.94841 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.25 9.75 71.98 0.70 -3.55 16 2 C -0.15 -5.67 3.93 30.60 0.12 -5.55 16 3 C 0.09 3.41 2.31 45.06 0.10 3.51 16 4 H 0.06 2.40 7.68 -2.39 -0.02 2.38 16 5 C -0.09 -2.65 2.33 -9.91 -0.02 -2.68 16 6 H 0.08 2.37 6.55 -2.39 -0.02 2.35 16 7 C 0.09 2.32 6.13 71.98 0.44 2.76 16 8 O -0.58 -12.87 13.55 -148.98 -2.02 -14.89 16 9 C -0.10 -2.81 6.50 31.80 0.21 -2.60 16 10 C 0.03 0.88 5.27 86.56 0.46 1.34 16 11 N -0.52 -20.98 5.10 -836.13 -4.27 -25.25 16 12 C 0.17 8.05 1.02 44.17 0.05 8.09 16 13 H 0.01 0.28 4.96 -2.38 -0.01 0.26 16 14 C -0.15 -6.20 8.30 71.98 0.60 -5.61 16 15 C -0.49 -27.41 7.21 25.60 0.18 -27.22 16 16 H 0.04 2.29 7.94 -2.91 -0.02 2.27 16 17 C 0.01 0.80 5.45 84.66 0.46 1.26 16 18 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 19 Si 0.94 45.09 24.41 68.60 1.67 46.77 16 20 H -0.27 -12.31 6.83 99.48 0.68 -11.63 16 21 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 22 H -0.25 -11.26 6.53 99.48 0.65 -10.61 16 23 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.78 6.56 -2.39 -0.02 1.77 16 26 H 0.06 2.95 5.31 -2.39 -0.01 2.93 16 27 H 0.05 1.81 7.76 -2.38 -0.02 1.80 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.21 7.99 -2.39 -0.02 1.19 16 30 H 0.40 4.87 9.12 -74.06 -0.68 4.20 16 31 H 0.08 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.07 1.99 7.76 -2.39 -0.02 1.97 16 33 H 0.04 1.17 8.03 -2.39 -0.02 1.15 16 34 H 0.08 2.52 7.79 -2.39 -0.02 2.50 16 35 H 0.06 2.11 7.17 -2.39 -0.02 2.10 16 36 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.03 1.47 3.21 -2.39 -0.01 1.47 16 38 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -65.93 282.57 -0.74 -66.66 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.28 Total: 15.76 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 3.30 Total: -30.24 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -3.97 Total: -84.06 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: -2.02 Total: -14.89 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.67 Total: 46.77 kcal Total: -65.93 -0.74 -66.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385907018.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.991 kcal (2) G-P(sol) polarization free energy of solvation -65.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds