Wall clock time and date at job start Mon Mar 30 2020 03:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47543 * 2 1 4 4 H 1.08998 * 109.46597 * 304.99665 * 3 2 1 5 5 O 1.42897 * 109.47205 * 64.99408 * 3 2 1 6 6 C 1.53001 * 109.47052 * 185.00153 * 3 2 1 7 7 H 1.08997 * 109.47561 * 60.17102 * 6 3 2 8 8 C 1.53000 * 109.46943 * 180.17203 * 6 3 2 9 9 N 1.46900 * 109.47047 * 300.17129 * 6 3 2 10 10 C 1.46897 * 111.00303 * 155.45581 * 9 6 3 11 11 C 1.52996 * 109.47247 * 179.83803 * 10 9 6 12 12 C 1.50705 * 115.56113 * 268.93655 * 11 10 9 13 13 H 1.07998 * 119.99581 * 140.17436 * 12 11 10 14 14 C 1.37874 * 119.99751 * 320.17196 * 12 11 10 15 15 N 1.31509 * 120.00529 * 344.10518 * 14 12 11 16 16 Si 1.86804 * 119.99781 * 164.10674 * 14 12 11 17 17 H 1.48496 * 109.47049 * 59.99638 * 16 14 12 18 18 H 1.48497 * 109.47139 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46646 * 300.00094 * 16 14 12 20 20 C 1.53002 * 117.50186 * 54.62611 * 11 10 9 21 21 C 1.53000 * 60.03058 * 107.47621 * 20 11 10 22 22 H 1.09000 * 109.47270 * 300.00353 * 1 2 3 23 23 H 1.09000 * 109.46572 * 59.99976 * 1 2 3 24 24 H 1.08997 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47270 * 239.99647 * 2 1 3 26 26 H 1.09007 * 109.47211 * 120.00133 * 2 1 3 27 27 H 0.96707 * 113.99713 * 63.00803 * 5 3 2 28 28 H 1.08995 * 109.47408 * 299.99967 * 8 6 3 29 29 H 1.09002 * 109.47251 * 60.00055 * 8 6 3 30 30 H 1.09001 * 109.47413 * 179.97438 * 8 6 3 31 31 H 1.00896 * 111.00152 * 31.49268 * 9 6 3 32 32 H 1.09002 * 109.47061 * 59.83364 * 10 9 6 33 33 H 1.09002 * 109.46449 * 299.83836 * 10 9 6 34 34 H 0.97000 * 120.00605 * 185.08204 * 15 14 12 35 35 H 1.08995 * 117.49818 * 214.98114 * 20 11 10 36 36 H 1.08999 * 117.49396 * 359.97438 * 20 11 10 37 37 H 1.09004 * 117.49409 * 107.50613 * 21 20 11 38 38 H 1.09001 * 117.50260 * 252.51655 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 3.5649 1.4442 -0.1258 7 1 3.8532 0.9595 -1.0586 8 6 4.0754 2.8865 -0.1214 9 7 4.1504 0.7141 1.0066 10 6 5.4790 0.1891 0.6642 11 6 6.0570 -0.5596 1.8667 12 6 6.8929 0.2688 2.8081 13 1 6.8127 0.1198 3.8747 14 6 7.7599 1.2167 2.3075 15 7 8.0962 1.1944 1.0363 16 14 8.4572 2.5328 3.4350 17 1 9.2234 1.8894 4.5322 18 1 9.3564 3.4240 2.6588 19 1 7.3452 3.3316 4.0101 20 6 5.2116 -1.6812 2.4735 21 6 6.4625 -2.0212 1.6608 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 2.0513 1.6818 2.0109 28 1 3.6409 3.4282 -0.9616 29 1 3.7872 3.3711 0.8114 30 1 5.1617 2.8878 -0.2106 31 1 3.5378 -0.0257 1.3155 32 1 6.1388 1.0153 0.3991 33 1 5.3931 -0.4930 -0.1816 34 1 8.7619 1.8144 0.6997 35 1 5.2600 -1.8199 3.5535 36 1 4.2434 -1.8854 2.0162 37 1 7.3338 -2.3837 2.2062 38 1 6.3173 -2.4488 0.6687 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386905555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:06 Heat of formation + Delta-G solvation = -38.345835 kcal Electronic energy + Delta-G solvation = -16770.349953 eV Core-core repulsion = 14227.117947 eV Total energy + Delta-G solvation = -2543.232007 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.65836 -36.72800 -33.98431 -32.50189 -32.12697 -29.60944 -26.27935 -25.64106 -23.98405 -21.76619 -21.16432 -19.85680 -18.95205 -16.72503 -15.89817 -15.57075 -15.04688 -14.68716 -14.40434 -13.73404 -13.37658 -13.04661 -12.80238 -12.45158 -12.06984 -11.73794 -11.49187 -11.43141 -11.30806 -10.98674 -10.91415 -10.84621 -10.54208 -10.49429 -10.30140 -10.17952 -9.48895 -9.14832 -9.05585 -8.68304 -8.02450 -7.50999 -6.03000 -4.00672 3.33209 3.38418 3.43809 4.42453 4.56433 4.80682 4.93696 5.07844 5.11093 5.13572 5.54591 5.60223 5.67324 5.72785 5.85813 5.96300 6.06408 6.14455 6.19371 6.26749 6.37215 6.39990 6.51568 6.61514 6.66045 6.75219 6.88310 6.97187 7.09550 7.34186 7.68695 7.91319 8.02230 8.07325 8.23868 8.52702 8.92892 9.56692 11.01546 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027339 B = 0.008442 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.928047 B = 3316.045154 C = 3847.321891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.163 4.163 3 C 0.109 3.891 4 H 0.094 0.906 5 O -0.559 6.559 6 C 0.052 3.948 7 H 0.039 0.961 8 C -0.132 4.132 9 N -0.674 5.674 10 C 0.094 3.906 11 C 0.067 3.933 12 C -0.479 4.479 13 H 0.058 0.942 14 C 0.073 3.927 15 N -0.880 5.880 16 Si 0.890 3.110 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.209 4.209 21 C -0.205 4.205 22 H 0.061 0.939 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.382 0.618 28 H 0.042 0.958 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.321 0.679 32 H 0.120 0.880 33 H -0.007 1.007 34 H 0.262 0.738 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.077 0.923 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.335 -0.678 -3.289 10.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.201 4.201 3 C 0.049 3.951 4 H 0.111 0.889 5 O -0.365 6.365 6 C -0.059 4.059 7 H 0.057 0.943 8 C -0.189 4.189 9 N -0.307 5.307 10 C -0.034 4.034 11 C 0.066 3.934 12 C -0.516 4.516 13 H 0.077 0.923 14 C -0.129 4.129 15 N -0.518 5.518 16 Si 0.718 3.282 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.247 4.247 21 C -0.244 4.244 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.230 0.770 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.011 0.989 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.095 0.905 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.347 0.424 -3.555 10.949 hybrid contribution 0.604 -0.703 0.225 0.954 sum -9.744 -0.279 -3.330 10.301 Atomic orbital electron populations 1.21662 0.95255 1.01079 1.02145 1.22302 0.96972 0.98129 1.02663 1.22069 0.93043 0.91922 0.88033 0.88856 1.86427 1.73890 1.59960 1.16209 1.22169 0.93472 0.96596 0.93633 0.94332 1.21649 1.01400 0.94688 1.01209 1.60580 1.04953 1.31028 1.34173 1.21809 0.88093 0.99866 0.93643 1.18911 0.94847 0.85317 0.94358 1.20437 1.21764 1.17420 0.91968 0.92348 1.24898 0.95931 0.97101 0.94959 1.69857 1.30650 1.37415 1.13861 0.86687 0.78678 0.82082 0.80744 1.20455 1.21387 1.19918 1.22764 0.93406 1.10445 0.98063 1.23030 0.97283 1.05608 0.98467 0.92030 0.93073 0.93168 0.91529 0.91262 0.76971 0.93909 0.91681 0.92207 0.85891 0.86197 0.98938 0.92833 0.90682 0.92081 0.90454 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.81 37.16 0.36 -1.21 16 2 C -0.16 -2.02 5.27 -26.73 -0.14 -2.16 16 3 C 0.11 1.52 2.78 -26.73 -0.07 1.45 16 4 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 5 O -0.56 -8.40 12.20 -35.23 -0.43 -8.83 16 6 C 0.05 0.86 2.49 -67.71 -0.17 0.70 16 7 H 0.04 0.66 7.81 -51.93 -0.41 0.25 16 8 C -0.13 -2.28 9.26 37.16 0.34 -1.94 16 9 N -0.67 -12.92 5.68 -106.73 -0.61 -13.52 16 10 C 0.09 2.15 5.28 -3.83 -0.02 2.13 16 11 C 0.07 1.62 1.97 -155.62 -0.31 1.32 16 12 C -0.48 -13.01 8.99 -34.44 -0.31 -13.32 16 13 H 0.06 1.60 7.86 -52.49 -0.41 1.18 16 14 C 0.07 1.99 5.05 -17.82 -0.09 1.90 16 15 N -0.88 -24.33 11.16 55.43 0.62 -23.71 16 16 Si 0.89 21.13 29.57 -169.99 -5.03 16.10 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 C -0.21 -4.46 9.43 -26.73 -0.25 -4.72 16 21 C -0.21 -4.71 9.88 -26.69 -0.26 -4.98 16 22 H 0.06 0.70 7.82 -51.93 -0.41 0.29 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.90 6.42 -51.93 -0.33 0.56 16 27 H 0.38 5.47 8.41 45.56 0.38 5.86 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 1.18 7.68 -51.93 -0.40 0.78 16 30 H 0.06 1.17 7.42 -51.93 -0.39 0.79 16 31 H 0.32 5.68 4.91 -39.29 -0.19 5.48 16 32 H 0.12 3.12 4.72 -51.93 -0.25 2.87 16 33 H -0.01 -0.17 7.79 -51.93 -0.40 -0.58 16 34 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 35 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.06 1.16 7.36 -51.93 -0.38 0.78 16 37 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 38 H 0.06 1.32 8.03 -51.93 -0.42 0.90 16 LS Contribution 301.68 15.07 4.55 4.55 Total: -1.00 -27.48 301.68 -7.51 -34.99 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.70 Total: 11.26 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -0.92 Total: -20.84 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.01 Total: -37.23 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.43 Total: -8.83 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -27.48 -7.51 -34.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386905555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.355 kcal (2) G-P(sol) polarization free energy of solvation -27.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds