Wall clock time and date at job start Mon Mar 30 2020 03:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47543 * 2 1 4 4 H 1.08998 * 109.46597 * 304.99665 * 3 2 1 5 5 O 1.42897 * 109.47205 * 64.99408 * 3 2 1 6 6 C 1.53001 * 109.47052 * 185.00153 * 3 2 1 7 7 H 1.08997 * 109.47561 * 60.17102 * 6 3 2 8 8 C 1.53000 * 109.46943 * 180.17203 * 6 3 2 9 9 N 1.46900 * 109.47047 * 300.17129 * 6 3 2 10 10 C 1.46897 * 111.00303 * 155.45581 * 9 6 3 11 11 C 1.52996 * 109.47247 * 179.83803 * 10 9 6 12 12 C 1.50705 * 115.56113 * 268.93655 * 11 10 9 13 13 H 1.07998 * 119.99581 * 140.17436 * 12 11 10 14 14 C 1.37874 * 119.99751 * 320.17196 * 12 11 10 15 15 N 1.31509 * 120.00529 * 344.10518 * 14 12 11 16 16 Si 1.86804 * 119.99781 * 164.10674 * 14 12 11 17 17 H 1.48496 * 109.47049 * 59.99638 * 16 14 12 18 18 H 1.48497 * 109.47139 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46646 * 300.00094 * 16 14 12 20 20 C 1.53002 * 117.50186 * 54.62611 * 11 10 9 21 21 C 1.53000 * 60.03058 * 107.47621 * 20 11 10 22 22 H 1.09000 * 109.47270 * 300.00353 * 1 2 3 23 23 H 1.09000 * 109.46572 * 59.99976 * 1 2 3 24 24 H 1.08997 * 109.47291 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47270 * 239.99647 * 2 1 3 26 26 H 1.09007 * 109.47211 * 120.00133 * 2 1 3 27 27 H 0.96707 * 113.99713 * 63.00803 * 5 3 2 28 28 H 1.08995 * 109.47408 * 299.99967 * 8 6 3 29 29 H 1.09002 * 109.47251 * 60.00055 * 8 6 3 30 30 H 1.09001 * 109.47413 * 179.97438 * 8 6 3 31 31 H 1.00896 * 111.00152 * 31.49268 * 9 6 3 32 32 H 1.09002 * 109.47061 * 59.83364 * 10 9 6 33 33 H 1.09002 * 109.46449 * 299.83836 * 10 9 6 34 34 H 0.97000 * 120.00605 * 185.08204 * 15 14 12 35 35 H 1.08995 * 117.49818 * 214.98114 * 20 11 10 36 36 H 1.08999 * 117.49396 * 359.97438 * 20 11 10 37 37 H 1.09004 * 117.49409 * 107.50613 * 21 20 11 38 38 H 1.09001 * 117.50260 * 252.51655 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 3.5649 1.4442 -0.1258 7 1 3.8532 0.9595 -1.0586 8 6 4.0754 2.8865 -0.1214 9 7 4.1504 0.7141 1.0066 10 6 5.4790 0.1891 0.6642 11 6 6.0570 -0.5596 1.8667 12 6 6.8929 0.2688 2.8081 13 1 6.8127 0.1198 3.8747 14 6 7.7599 1.2167 2.3075 15 7 8.0962 1.1944 1.0363 16 14 8.4572 2.5328 3.4350 17 1 9.2234 1.8894 4.5322 18 1 9.3564 3.4240 2.6588 19 1 7.3452 3.3316 4.0101 20 6 5.2116 -1.6812 2.4735 21 6 6.4625 -2.0212 1.6608 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 2.0513 1.6818 2.0109 28 1 3.6409 3.4282 -0.9616 29 1 3.7872 3.3711 0.8114 30 1 5.1617 2.8878 -0.2106 31 1 3.5378 -0.0257 1.3155 32 1 6.1388 1.0153 0.3991 33 1 5.3931 -0.4930 -0.1816 34 1 8.7619 1.8144 0.6997 35 1 5.2600 -1.8199 3.5535 36 1 4.2434 -1.8854 2.0162 37 1 7.3338 -2.3837 2.2062 38 1 6.3173 -2.4488 0.6687 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386905555.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:06 Heat of formation + Delta-G solvation = -56.257860 kcal Electronic energy + Delta-G solvation = -16771.126677 eV Core-core repulsion = 14227.117947 eV Total energy + Delta-G solvation = -2544.008731 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.98802 -38.40497 -35.41879 -34.16634 -33.50920 -31.09965 -27.81124 -27.31307 -25.63643 -23.05975 -22.69483 -21.20445 -20.83808 -18.43900 -17.28359 -16.91811 -16.62648 -16.35277 -15.75778 -15.34082 -14.94340 -14.74213 -13.95448 -13.63814 -13.56727 -13.28155 -13.08436 -12.84222 -12.78581 -12.65841 -12.53416 -12.31332 -12.13147 -12.05318 -11.82565 -11.63517 -11.04126 -10.97732 -10.60924 -10.54857 -9.95213 -9.08542 -8.07508 -6.10518 1.41919 1.46577 1.52582 2.44673 3.02924 3.27031 3.55209 3.74451 3.86123 3.95818 4.13779 4.33945 4.42860 4.51319 4.59390 4.67393 4.73145 4.78324 4.84500 4.87846 4.94890 5.01377 5.07724 5.13468 5.16525 5.27776 5.34411 5.40657 5.45311 5.56001 5.66891 6.11125 6.36638 6.43543 6.78732 6.86963 6.87745 7.48684 8.95539 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.027339 B = 0.008442 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.928047 B = 3316.045154 C = 3847.321891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.159 4.159 3 C 0.117 3.883 4 H 0.108 0.892 5 O -0.566 6.566 6 C 0.051 3.949 7 H 0.038 0.962 8 C -0.127 4.127 9 N -0.676 5.676 10 C 0.107 3.893 11 C 0.034 3.966 12 C -0.500 4.500 13 H 0.048 0.952 14 C 0.033 3.967 15 N -0.901 5.901 16 Si 0.944 3.056 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.275 1.275 20 C -0.181 4.181 21 C -0.210 4.210 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.383 0.617 28 H 0.068 0.932 29 H 0.054 0.946 30 H 0.027 0.973 31 H 0.332 0.668 32 H 0.088 0.912 33 H -0.010 1.010 34 H 0.261 0.739 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.910 -0.874 -3.366 12.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C 0.057 3.943 4 H 0.126 0.874 5 O -0.373 6.373 6 C -0.059 4.059 7 H 0.056 0.944 8 C -0.185 4.185 9 N -0.310 5.310 10 C -0.021 4.021 11 C 0.034 3.966 12 C -0.537 4.537 13 H 0.066 0.934 14 C -0.167 4.167 15 N -0.539 5.539 16 Si 0.770 3.230 17 H -0.200 1.200 18 H -0.210 1.210 19 H -0.200 1.200 20 C -0.218 4.218 21 C -0.249 4.249 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.082 0.918 27 H 0.232 0.768 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.153 0.847 32 H 0.106 0.894 33 H 0.008 0.992 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.933 0.219 -3.623 12.473 hybrid contribution 1.086 -0.657 0.240 1.292 sum -10.847 -0.438 -3.383 11.371 Atomic orbital electron populations 1.21628 0.93880 1.01947 1.02269 1.22257 0.98100 0.96718 1.02617 1.22067 0.90735 0.93316 0.88137 0.87438 1.86424 1.73845 1.60413 1.16586 1.22240 0.95463 0.95509 0.92662 0.94423 1.21602 0.99452 0.95682 1.01751 1.60434 1.03902 1.31269 1.35385 1.21437 0.89374 0.98379 0.92942 1.19012 0.96468 0.85925 0.95240 1.20703 1.22480 1.18516 0.92006 0.93391 1.25494 0.96445 0.98605 0.96147 1.69967 1.31060 1.37911 1.15002 0.85838 0.78003 0.79860 0.79257 1.19961 1.21044 1.20017 1.22766 0.93857 1.07110 0.98102 1.23004 0.97984 1.04542 0.99341 0.92587 0.92269 0.91973 0.91091 0.91759 0.76762 0.91333 0.92706 0.95344 0.84693 0.89365 0.99246 0.92985 0.90554 0.89300 0.91661 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.81 71.98 0.71 -1.94 16 2 C -0.16 -3.52 5.27 30.59 0.16 -3.36 16 3 C 0.12 3.00 2.78 30.59 0.09 3.08 16 4 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 5 O -0.57 -15.89 12.20 -148.98 -1.82 -17.71 16 6 C 0.05 1.65 2.49 44.92 0.11 1.76 16 7 H 0.04 1.24 7.81 -2.39 -0.02 1.22 16 8 C -0.13 -4.34 9.26 71.98 0.67 -3.68 16 9 N -0.68 -25.29 5.68 -491.58 -2.79 -28.08 16 10 C 0.11 4.93 5.28 86.30 0.46 5.38 16 11 C 0.03 1.67 1.97 -52.90 -0.10 1.56 16 12 C -0.50 -27.36 8.99 25.60 0.23 -27.13 16 13 H 0.05 2.64 7.86 -2.91 -0.02 2.62 16 14 C 0.03 1.81 5.05 84.65 0.43 2.24 16 15 N -0.90 -50.66 11.16 21.45 0.24 -50.42 16 16 Si 0.94 43.73 29.57 68.60 2.03 45.76 16 17 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 20 C -0.18 -7.39 9.43 30.59 0.29 -7.11 16 21 C -0.21 -9.49 9.88 30.62 0.30 -9.19 16 22 H 0.06 1.13 7.82 -2.39 -0.02 1.11 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.06 1.49 6.42 -2.38 -0.02 1.48 16 27 H 0.38 10.38 8.41 -74.05 -0.62 9.75 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.96 7.68 -2.39 -0.02 1.94 16 30 H 0.03 1.12 7.42 -2.39 -0.02 1.10 16 31 H 0.33 11.12 4.91 -89.70 -0.44 10.68 16 32 H 0.09 4.69 4.72 -2.39 -0.01 4.68 16 33 H -0.01 -0.48 7.79 -2.39 -0.02 -0.49 16 34 H 0.26 14.08 8.32 -92.71 -0.77 13.31 16 35 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.09 3.12 7.36 -2.39 -0.02 3.10 16 37 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 38 H 0.07 3.03 8.03 -2.39 -0.02 3.01 16 Total: -1.00 -58.12 301.68 0.96 -57.15 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: -0.03 Total: 31.66 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 3.33 Total: -38.37 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -2.55 Total: -78.49 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -1.82 Total: -17.71 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -58.12 0.96 -57.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386905555.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.897 kcal (2) G-P(sol) polarization free energy of solvation -58.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds