Wall clock time and date at job start Mon Mar 30 2020 03:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47421 * 2 1 4 4 H 1.09004 * 109.47053 * 305.00135 * 3 2 1 5 5 O 1.42901 * 109.47126 * 64.99503 * 3 2 1 6 6 C 1.52998 * 109.47560 * 185.00187 * 3 2 1 7 7 H 1.08998 * 109.47413 * 57.39207 * 6 3 2 8 8 C 1.53005 * 109.46527 * 297.39583 * 6 3 2 9 9 N 1.46898 * 109.47113 * 177.39810 * 6 3 2 10 10 C 1.46900 * 110.99930 * 206.48772 * 9 6 3 11 11 C 1.53002 * 109.47226 * 174.21335 * 10 9 6 12 12 C 1.50697 * 115.54933 * 39.62141 * 11 10 9 13 13 H 1.08002 * 119.99703 * 268.09286 * 12 11 10 14 14 C 1.37874 * 120.00357 * 88.09162 * 12 11 10 15 15 N 1.31517 * 120.00124 * 179.50575 * 14 12 11 16 16 Si 1.86797 * 119.99998 * 359.49929 * 14 12 11 17 17 H 1.48501 * 109.47032 * 91.76086 * 16 14 12 18 18 H 1.48497 * 109.47548 * 211.76423 * 16 14 12 19 19 H 1.48499 * 109.47015 * 331.76344 * 16 14 12 20 20 C 1.52996 * 117.49875 * 253.90766 * 11 10 9 21 21 C 1.52994 * 60.00074 * 252.51397 * 20 11 10 22 22 H 1.08998 * 109.46844 * 300.00657 * 1 2 3 23 23 H 1.09002 * 109.46969 * 59.99956 * 1 2 3 24 24 H 1.08993 * 109.46731 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47511 * 239.99654 * 2 1 3 26 26 H 1.09003 * 109.47022 * 119.99494 * 2 1 3 27 27 H 0.96701 * 114.00154 * 60.00493 * 5 3 2 28 28 H 1.08993 * 109.47103 * 63.94659 * 8 6 3 29 29 H 1.09006 * 109.46738 * 183.94511 * 8 6 3 30 30 H 1.08996 * 109.47165 * 303.94223 * 8 6 3 31 31 H 1.00908 * 111.00386 * 82.54127 * 9 6 3 32 32 H 1.09001 * 109.47639 * 294.21487 * 10 9 6 33 33 H 1.09001 * 109.46761 * 54.21681 * 10 9 6 34 34 H 0.97000 * 119.99991 * 180.02562 * 15 14 12 35 35 H 1.08999 * 117.50217 * 0.02562 * 20 11 10 36 36 H 1.09007 * 117.49505 * 145.02029 * 20 11 10 37 37 H 1.09005 * 117.49477 * 252.51008 * 21 20 11 38 38 H 1.08998 * 117.51886 * 107.48472 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 3.5649 1.4443 -0.1258 7 1 3.8552 0.9164 -1.0341 8 6 4.1775 0.7442 1.0890 9 7 4.0493 2.8297 -0.1884 10 6 5.3271 2.9085 -0.9089 11 6 5.7268 4.3755 -1.0795 12 6 5.4541 5.2654 0.1057 13 1 4.5186 5.8006 0.1751 14 6 6.3989 5.3965 1.1013 15 7 6.1648 6.1808 2.1307 16 14 8.0111 4.4600 0.9881 17 1 9.0267 5.3032 0.3078 18 1 8.4839 4.1212 2.3544 19 1 7.8046 3.2109 0.2120 20 6 5.5816 4.9898 -2.4732 21 6 6.9717 4.6756 -1.9167 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0141 1.6543 2.0139 28 1 3.8739 -0.3026 1.0964 29 1 5.2644 0.8069 1.0345 30 1 3.8308 1.2296 2.0012 31 1 4.1304 3.2267 0.7357 32 1 6.0971 2.3857 -0.3415 33 1 5.2204 2.4446 -1.8895 34 1 6.8297 6.2733 2.8310 35 1 5.2008 4.3490 -3.2685 36 1 5.2885 6.0380 -2.5330 37 1 7.5932 5.5172 -1.6106 38 1 7.5061 3.8280 -2.3457 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386905557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:09 Heat of formation + Delta-G solvation = -38.025939 kcal Electronic energy + Delta-G solvation = -16617.020309 eV Core-core repulsion = 14073.802174 eV Total energy + Delta-G solvation = -2543.218135 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.63359 -37.01706 -34.32203 -32.62681 -32.02260 -29.61672 -26.27977 -25.69807 -24.31186 -21.80533 -21.50823 -20.08746 -18.88448 -16.45874 -16.05170 -15.62254 -14.94976 -14.75024 -14.33643 -14.25758 -13.62857 -13.21006 -12.66579 -12.46086 -12.40363 -11.97920 -11.82758 -11.72613 -11.62550 -11.06751 -10.99938 -10.87698 -10.65072 -10.42787 -10.35079 -10.06669 -9.67649 -9.32224 -8.94773 -8.55953 -8.38398 -7.43920 -6.04669 -4.05275 3.29415 3.38968 3.43273 4.45320 4.46556 4.78438 4.99514 5.12220 5.16607 5.23664 5.29138 5.31919 5.47540 5.56423 5.78558 5.87308 5.88534 5.91571 5.99213 6.07972 6.17286 6.21345 6.25305 6.29062 6.42775 6.51532 6.56519 6.63241 6.82248 7.09726 7.21774 7.81730 7.92524 8.01257 8.35775 8.63388 9.04397 9.58759 11.07087 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031289 B = 0.007688 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.680742 B = 3641.106839 C = 3883.271483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.157 4.157 3 C 0.120 3.880 4 H 0.102 0.898 5 O -0.551 6.551 6 C 0.049 3.951 7 H 0.073 0.927 8 C -0.189 4.189 9 N -0.660 5.660 10 C 0.097 3.903 11 C 0.009 3.991 12 C -0.472 4.472 13 H 0.081 0.919 14 C 0.074 3.926 15 N -0.899 5.899 16 Si 0.875 3.125 17 H -0.280 1.280 18 H -0.297 1.297 19 H -0.259 1.259 20 C -0.175 4.175 21 C -0.209 4.209 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.364 0.636 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.059 0.941 31 H 0.362 0.638 32 H 0.019 0.981 33 H 0.045 0.955 34 H 0.262 0.738 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 -12.897 -3.708 14.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.196 4.196 3 C 0.060 3.940 4 H 0.120 0.880 5 O -0.356 6.356 6 C -0.063 4.063 7 H 0.091 0.909 8 C -0.248 4.248 9 N -0.293 5.293 10 C -0.033 4.033 11 C 0.008 3.992 12 C -0.510 4.510 13 H 0.099 0.901 14 C -0.128 4.128 15 N -0.537 5.537 16 Si 0.704 3.296 17 H -0.207 1.207 18 H -0.225 1.225 19 H -0.184 1.184 20 C -0.212 4.212 21 C -0.247 4.247 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.066 0.934 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.211 0.789 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.185 0.815 32 H 0.037 0.963 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.763 -12.245 -4.487 14.258 hybrid contribution 2.076 -1.270 0.980 2.623 sum -3.688 -13.515 -3.507 14.442 Atomic orbital electron populations 1.21688 0.95417 1.00855 1.02467 1.22300 0.96822 0.98159 1.02298 1.21984 0.92750 0.91240 0.88004 0.88049 1.86645 1.76388 1.57272 1.15283 1.22258 0.95497 0.91214 0.97288 0.90866 1.22581 1.01820 1.00524 0.99903 1.60339 1.29507 1.13895 1.25587 1.21628 0.89301 0.96549 0.95802 1.19382 0.95577 0.92639 0.91614 1.20275 1.03949 1.25252 1.01542 0.90072 1.24990 0.97949 0.94745 0.95110 1.69907 1.35336 1.38005 1.10431 0.86937 0.84663 0.81582 0.76397 1.20661 1.22468 1.18401 1.22789 0.99227 1.00980 0.98246 1.22973 0.91681 1.02287 1.07769 0.92094 0.92784 0.93361 0.91487 0.91821 0.78864 0.92601 0.92439 0.92157 0.81539 0.96312 0.93706 0.92777 0.91197 0.89808 0.89678 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.81 37.16 0.36 -1.15 16 2 C -0.16 -1.70 5.18 -26.73 -0.14 -1.84 16 3 C 0.12 1.67 2.97 -26.73 -0.08 1.59 16 4 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 5 O -0.55 -8.45 12.71 -35.23 -0.45 -8.90 16 6 C 0.05 0.74 2.49 -67.71 -0.17 0.57 16 7 H 0.07 1.06 7.68 -51.93 -0.40 0.67 16 8 C -0.19 -2.59 8.52 37.16 0.32 -2.27 16 9 N -0.66 -12.98 5.92 -106.72 -0.63 -13.61 16 10 C 0.10 2.00 5.47 -3.82 -0.02 1.98 16 11 C 0.01 0.21 1.21 -155.66 -0.19 0.02 16 12 C -0.47 -12.98 8.08 -34.44 -0.28 -13.25 16 13 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 16 Si 0.88 21.59 25.03 -169.99 -4.25 17.34 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.26 -6.07 5.38 56.52 0.30 -5.77 16 20 C -0.18 -3.70 9.88 -26.74 -0.26 -3.97 16 21 C -0.21 -4.55 7.51 -26.74 -0.20 -4.75 16 22 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.64 6.85 -51.93 -0.36 0.28 16 27 H 0.36 4.54 7.17 45.56 0.33 4.87 16 28 H 0.06 0.62 6.82 -51.93 -0.35 0.27 16 29 H 0.06 0.87 7.58 -51.93 -0.39 0.47 16 30 H 0.06 0.81 6.54 -51.93 -0.34 0.47 16 31 H 0.36 7.99 7.46 -39.29 -0.29 7.69 16 32 H 0.02 0.40 5.97 -51.93 -0.31 0.09 16 33 H 0.04 0.85 7.71 -51.93 -0.40 0.45 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 36 H 0.08 1.80 8.14 -51.92 -0.42 1.38 16 37 H 0.08 1.95 7.10 -51.93 -0.37 1.58 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 295.80 15.07 4.46 4.46 Total: -1.00 -29.57 295.80 -6.76 -36.33 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -5.90 Total: 11.76 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -0.76 Total: -21.09 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.14 Total: -39.90 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.45 Total: -8.90 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.25 Total: 17.34 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.57 -6.76 -36.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386905557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.692 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds