Wall clock time and date at job start Mon Mar 30 2020 03:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47421 * 2 1 4 4 H 1.09004 * 109.47053 * 305.00135 * 3 2 1 5 5 O 1.42901 * 109.47126 * 64.99503 * 3 2 1 6 6 C 1.52998 * 109.47560 * 185.00187 * 3 2 1 7 7 H 1.08998 * 109.47413 * 57.39207 * 6 3 2 8 8 C 1.53005 * 109.46527 * 297.39583 * 6 3 2 9 9 N 1.46898 * 109.47113 * 177.39810 * 6 3 2 10 10 C 1.46900 * 110.99930 * 206.48772 * 9 6 3 11 11 C 1.53002 * 109.47226 * 174.21335 * 10 9 6 12 12 C 1.50697 * 115.54933 * 39.62141 * 11 10 9 13 13 H 1.08002 * 119.99703 * 268.09286 * 12 11 10 14 14 C 1.37874 * 120.00357 * 88.09162 * 12 11 10 15 15 N 1.31517 * 120.00124 * 179.50575 * 14 12 11 16 16 Si 1.86797 * 119.99998 * 359.49929 * 14 12 11 17 17 H 1.48501 * 109.47032 * 91.76086 * 16 14 12 18 18 H 1.48497 * 109.47548 * 211.76423 * 16 14 12 19 19 H 1.48499 * 109.47015 * 331.76344 * 16 14 12 20 20 C 1.52996 * 117.49875 * 253.90766 * 11 10 9 21 21 C 1.52994 * 60.00074 * 252.51397 * 20 11 10 22 22 H 1.08998 * 109.46844 * 300.00657 * 1 2 3 23 23 H 1.09002 * 109.46969 * 59.99956 * 1 2 3 24 24 H 1.08993 * 109.46731 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47511 * 239.99654 * 2 1 3 26 26 H 1.09003 * 109.47022 * 119.99494 * 2 1 3 27 27 H 0.96701 * 114.00154 * 60.00493 * 5 3 2 28 28 H 1.08993 * 109.47103 * 63.94659 * 8 6 3 29 29 H 1.09006 * 109.46738 * 183.94511 * 8 6 3 30 30 H 1.08996 * 109.47165 * 303.94223 * 8 6 3 31 31 H 1.00908 * 111.00386 * 82.54127 * 9 6 3 32 32 H 1.09001 * 109.47639 * 294.21487 * 10 9 6 33 33 H 1.09001 * 109.46761 * 54.21681 * 10 9 6 34 34 H 0.97000 * 119.99991 * 180.02562 * 15 14 12 35 35 H 1.08999 * 117.50217 * 0.02562 * 20 11 10 36 36 H 1.09007 * 117.49505 * 145.02029 * 20 11 10 37 37 H 1.09005 * 117.49477 * 252.51008 * 21 20 11 38 38 H 1.08998 * 117.51886 * 107.48472 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6620 2.0814 1.2210 6 6 3.5649 1.4443 -0.1258 7 1 3.8552 0.9164 -1.0341 8 6 4.1775 0.7442 1.0890 9 7 4.0493 2.8297 -0.1884 10 6 5.3271 2.9085 -0.9089 11 6 5.7268 4.3755 -1.0795 12 6 5.4541 5.2654 0.1057 13 1 4.5186 5.8006 0.1751 14 6 6.3989 5.3965 1.1013 15 7 6.1648 6.1808 2.1307 16 14 8.0111 4.4600 0.9881 17 1 9.0267 5.3032 0.3078 18 1 8.4839 4.1212 2.3544 19 1 7.8046 3.2109 0.2120 20 6 5.5816 4.9898 -2.4732 21 6 6.9717 4.6756 -1.9167 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3632 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.0141 1.6543 2.0139 28 1 3.8739 -0.3026 1.0964 29 1 5.2644 0.8069 1.0345 30 1 3.8308 1.2296 2.0012 31 1 4.1304 3.2267 0.7357 32 1 6.0971 2.3857 -0.3415 33 1 5.2204 2.4446 -1.8895 34 1 6.8297 6.2733 2.8310 35 1 5.2008 4.3490 -3.2685 36 1 5.2885 6.0380 -2.5330 37 1 7.5932 5.5172 -1.6106 38 1 7.5061 3.8280 -2.3457 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386905557.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:09 Heat of formation + Delta-G solvation = -60.045153 kcal Electronic energy + Delta-G solvation = -16617.975134 eV Core-core repulsion = 14073.802174 eV Total energy + Delta-G solvation = -2544.172960 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.87686 -38.65675 -35.70141 -34.17860 -33.60478 -30.90087 -27.80712 -27.26598 -25.84635 -23.26255 -22.80461 -21.31651 -20.71821 -18.24157 -17.42917 -16.84926 -16.72583 -16.07291 -15.65898 -15.55452 -15.28647 -14.74257 -14.28401 -14.00500 -13.60378 -13.29266 -13.19421 -12.98858 -12.77593 -12.67138 -12.55343 -12.13474 -12.07822 -11.88482 -11.71429 -11.53524 -11.42845 -10.89591 -10.76076 -10.47730 -10.20299 -8.93302 -8.23214 -6.27299 1.34169 1.37024 1.48945 2.38710 3.07665 3.14660 3.44560 3.73385 4.01294 4.06474 4.22666 4.25543 4.32073 4.38077 4.43200 4.52803 4.59955 4.75556 4.79042 4.86591 4.88015 4.96203 5.00715 5.07508 5.12688 5.12880 5.21123 5.37614 5.45425 5.47898 5.51721 5.79148 6.36424 6.54329 6.70114 6.84001 6.96361 7.39620 8.92573 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031289 B = 0.007688 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.680742 B = 3641.106839 C = 3883.271483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.148 4.148 3 C 0.122 3.878 4 H 0.082 0.918 5 O -0.574 6.574 6 C 0.048 3.952 7 H 0.087 0.913 8 C -0.184 4.184 9 N -0.677 5.677 10 C 0.106 3.894 11 C -0.020 4.020 12 C -0.463 4.463 13 H 0.029 0.971 14 C 0.020 3.980 15 N -0.950 5.950 16 Si 0.936 3.064 17 H -0.277 1.277 18 H -0.302 1.302 19 H -0.233 1.233 20 C -0.164 4.164 21 C -0.201 4.201 22 H 0.048 0.952 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.375 0.625 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.056 0.944 31 H 0.343 0.657 32 H 0.014 0.986 33 H 0.069 0.931 34 H 0.262 0.738 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.482 -15.787 -5.180 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.186 4.186 3 C 0.062 3.938 4 H 0.100 0.900 5 O -0.381 6.381 6 C -0.062 4.062 7 H 0.105 0.895 8 C -0.242 4.242 9 N -0.308 5.308 10 C -0.024 4.024 11 C -0.021 4.021 12 C -0.502 4.502 13 H 0.047 0.953 14 C -0.177 4.177 15 N -0.591 5.591 16 Si 0.762 3.238 17 H -0.203 1.203 18 H -0.229 1.229 19 H -0.156 1.156 20 C -0.201 4.201 21 C -0.238 4.238 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.224 0.776 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.163 0.837 32 H 0.032 0.968 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.120 0.880 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.105 -15.162 -5.993 17.084 hybrid contribution 1.737 -0.298 1.416 2.261 sum -3.368 -15.459 -4.577 16.471 Atomic orbital electron populations 1.21681 0.95148 1.01840 1.01708 1.22212 0.96971 0.95749 1.03635 1.21964 0.91868 0.93036 0.86897 0.89970 1.86611 1.76743 1.58419 1.16313 1.22387 0.96154 0.89013 0.98671 0.89489 1.22504 1.00653 1.02197 0.98864 1.60326 1.29150 1.17015 1.24346 1.21515 0.89538 0.94300 0.97018 1.19416 0.98032 0.93747 0.90900 1.20302 1.01665 1.24895 1.03300 0.95302 1.25750 1.01583 0.95715 0.94625 1.70062 1.36809 1.40469 1.11712 0.85953 0.80104 0.81262 0.76450 1.20251 1.22913 1.15633 1.22826 0.98933 1.00733 0.97644 1.22996 0.91419 1.02714 1.06692 0.93241 0.93242 0.91461 0.90002 0.90475 0.77596 0.89475 0.93850 0.92546 0.83741 0.96844 0.91241 0.92879 0.88034 0.91197 0.91275 0.88187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.81 71.98 0.71 -1.99 16 2 C -0.15 -2.76 5.18 30.59 0.16 -2.60 16 3 C 0.12 3.22 2.97 30.59 0.09 3.31 16 4 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 5 O -0.57 -17.45 12.71 -148.98 -1.89 -19.34 16 6 C 0.05 1.36 2.49 44.92 0.11 1.48 16 7 H 0.09 2.23 7.68 -2.39 -0.02 2.22 16 8 C -0.18 -4.58 8.52 71.98 0.61 -3.97 16 9 N -0.68 -26.16 5.92 -491.57 -2.91 -29.07 16 10 C 0.11 4.13 5.47 86.30 0.47 4.60 16 11 C -0.02 -0.90 1.21 -52.93 -0.06 -0.96 16 12 C -0.46 -26.16 8.08 25.60 0.21 -25.96 16 13 H 0.03 1.88 8.06 -2.91 -0.02 1.86 16 14 C 0.02 1.15 5.47 84.65 0.46 1.61 16 15 N -0.95 -59.37 13.96 21.45 0.30 -59.08 16 16 Si 0.94 44.38 25.03 68.60 1.72 46.10 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 18 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 19 H -0.23 -9.99 5.38 99.48 0.54 -9.45 16 20 C -0.16 -6.61 9.88 30.59 0.30 -6.30 16 21 C -0.20 -8.17 7.51 30.59 0.23 -7.94 16 22 H 0.05 1.02 7.82 -2.39 -0.02 1.00 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 26 H 0.08 1.26 6.85 -2.39 -0.02 1.24 16 27 H 0.38 9.14 7.17 -74.06 -0.53 8.61 16 28 H 0.09 1.62 6.82 -2.39 -0.02 1.60 16 29 H 0.04 1.21 7.58 -2.38 -0.02 1.19 16 30 H 0.06 1.44 6.54 -2.39 -0.02 1.42 16 31 H 0.34 15.42 7.46 -89.69 -0.67 14.75 16 32 H 0.01 0.54 5.97 -2.39 -0.01 0.53 16 33 H 0.07 2.37 7.71 -2.39 -0.02 2.35 16 34 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 35 H 0.10 3.45 8.08 -2.39 -0.02 3.43 16 36 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 37 H 0.07 3.04 7.10 -2.38 -0.02 3.02 16 38 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -65.65 295.80 0.17 -65.48 By element: Atomic # 1 Polarization: 34.97 SS G_CDS: -0.33 Total: 34.63 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 3.29 Total: -38.73 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -2.61 Total: -88.14 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -1.89 Total: -19.34 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.72 Total: 46.10 kcal Total: -65.65 0.17 -65.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386905557.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.432 kcal (2) G-P(sol) polarization free energy of solvation -65.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds