Wall clock time and date at job start Mon Mar 30 2020 03:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47152 * 2 1 4 4 H 1.08997 * 109.47265 * 54.99634 * 3 2 1 5 5 O 1.42902 * 109.46990 * 294.99949 * 3 2 1 6 6 C 1.52996 * 109.47146 * 175.00382 * 3 2 1 7 7 H 1.09010 * 109.47046 * 304.99562 * 6 3 2 8 8 C 1.52989 * 109.47618 * 64.99399 * 6 3 2 9 9 N 1.46902 * 109.47152 * 185.00212 * 6 3 2 10 10 C 1.46897 * 111.00118 * 154.99756 * 9 6 3 11 11 C 1.53007 * 109.46915 * 174.15480 * 10 9 6 12 12 C 1.50697 * 115.56233 * 39.74831 * 11 10 9 13 13 H 1.08008 * 119.99702 * 262.31430 * 12 11 10 14 14 C 1.37876 * 120.00200 * 82.30780 * 12 11 10 15 15 N 1.31516 * 120.00087 * 350.93974 * 14 12 11 16 16 Si 1.86803 * 119.99746 * 170.93758 * 14 12 11 17 17 H 1.48495 * 109.47329 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46914 * 120.00564 * 16 14 12 19 19 H 1.48499 * 109.47022 * 240.00171 * 16 14 12 20 20 C 1.53000 * 117.49471 * 185.43549 * 11 10 9 21 21 C 1.52996 * 60.03039 * 107.47711 * 20 11 10 22 22 H 1.08995 * 109.47272 * 60.00188 * 1 2 3 23 23 H 1.09000 * 109.47062 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46936 * 299.99664 * 1 2 3 25 25 H 1.08998 * 109.47117 * 239.99813 * 2 1 3 26 26 H 1.09004 * 109.47277 * 120.00011 * 2 1 3 27 27 H 0.96702 * 113.99792 * 300.00222 * 5 3 2 28 28 H 1.09010 * 109.46779 * 59.99999 * 8 6 3 29 29 H 1.09000 * 109.47876 * 179.97438 * 8 6 3 30 30 H 1.09002 * 109.47690 * 300.00462 * 8 6 3 31 31 H 1.00898 * 110.99797 * 31.03699 * 9 6 3 32 32 H 1.08994 * 109.47348 * 54.15231 * 10 9 6 33 33 H 1.09003 * 109.46782 * 294.15162 * 10 9 6 34 34 H 0.96997 * 119.99640 * 185.01602 * 15 14 12 35 35 H 1.08999 * 117.49259 * 214.97749 * 20 11 10 36 36 H 1.08992 * 117.50148 * 359.97290 * 20 11 10 37 37 H 1.09007 * 117.50119 * 107.50061 * 21 20 11 38 38 H 1.09003 * 117.50070 * 252.52140 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 8 1.6620 2.0814 -1.2211 6 6 3.5648 1.4443 0.1256 7 1 3.8571 0.8800 1.0113 8 6 4.1798 0.7976 -1.1170 9 7 4.0446 2.8276 0.2461 10 6 5.3394 2.8773 0.9382 11 6 5.8747 4.3105 0.9160 12 6 4.8470 5.3919 1.1293 13 1 4.4212 5.9071 0.2808 14 6 4.4501 5.7235 2.4074 15 7 4.8290 4.9834 3.4264 16 14 3.3744 7.2240 2.6916 17 1 3.0887 7.8818 1.3913 18 1 2.0982 6.8053 3.3250 19 1 4.0808 8.1775 3.5845 20 6 7.2780 4.5491 1.4769 21 6 7.0366 4.6163 -0.0324 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 2.0142 1.6541 -2.0139 28 1 3.8875 1.3619 -2.0027 29 1 5.2661 0.7992 -1.0277 30 1 3.8238 -0.2288 -1.2064 31 1 3.3629 3.4074 0.7120 32 1 6.0461 2.2177 0.4347 33 1 5.2119 2.5529 1.9710 34 1 4.4913 5.1732 4.3157 35 1 7.4579 5.4883 2.0001 36 1 7.8197 3.6853 1.8620 37 1 7.0577 5.5997 -0.5022 38 1 7.4191 3.7963 -0.6403 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386905558.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:11 Heat of formation + Delta-G solvation = -61.255549 kcal Electronic energy + Delta-G solvation = -16564.206205 eV Core-core repulsion = 14019.980758 eV Total energy + Delta-G solvation = -2544.225447 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.81635 -38.42460 -35.53651 -33.97038 -33.59873 -30.90105 -27.61719 -27.40249 -25.76768 -22.90800 -22.63549 -21.21335 -20.86304 -17.99215 -17.46073 -16.83297 -16.56770 -16.24993 -15.93906 -15.45112 -14.98203 -14.54412 -14.11862 -13.63467 -13.32628 -13.28492 -12.95458 -12.90638 -12.81686 -12.68943 -12.60597 -12.33072 -12.23090 -11.94068 -11.74252 -11.51533 -11.28805 -10.74824 -10.62280 -10.37266 -9.90875 -8.94855 -8.07044 -6.14438 1.38882 1.43246 1.53774 2.44409 3.18789 3.28947 3.56647 3.76526 3.85319 4.08099 4.19903 4.34086 4.40176 4.48879 4.59597 4.63686 4.77720 4.80624 4.89646 4.93400 5.00870 5.04669 5.08969 5.10282 5.19216 5.25233 5.27563 5.41965 5.51493 5.63752 5.65638 5.82244 6.43429 6.62107 6.74712 6.91923 6.98411 7.51153 9.00385 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023509 B = 0.008415 C = 0.006877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.743698 B = 3326.521340 C = 4070.621395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.146 4.146 3 C 0.113 3.887 4 H 0.071 0.929 5 O -0.564 6.564 6 C 0.045 3.955 7 H 0.032 0.968 8 C -0.135 4.135 9 N -0.666 5.666 10 C 0.124 3.876 11 C 0.025 3.975 12 C -0.487 4.487 13 H 0.047 0.953 14 C 0.028 3.972 15 N -0.908 5.908 16 Si 0.942 3.058 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.285 1.285 20 C -0.173 4.173 21 C -0.185 4.185 22 H 0.056 0.944 23 H 0.068 0.932 24 H 0.043 0.957 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.381 0.619 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.338 0.662 32 H 0.049 0.951 33 H -0.002 1.002 34 H 0.257 0.743 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 -10.844 -6.814 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.185 4.185 3 C 0.053 3.947 4 H 0.089 0.911 5 O -0.371 6.371 6 C -0.065 4.065 7 H 0.050 0.950 8 C -0.193 4.193 9 N -0.298 5.298 10 C -0.006 4.006 11 C 0.024 3.976 12 C -0.525 4.525 13 H 0.066 0.934 14 C -0.172 4.172 15 N -0.547 5.547 16 Si 0.769 3.231 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.211 1.211 20 C -0.211 4.211 21 C -0.222 4.222 22 H 0.075 0.925 23 H 0.087 0.913 24 H 0.062 0.938 25 H 0.105 0.895 26 H 0.090 0.910 27 H 0.231 0.769 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.157 0.843 32 H 0.068 0.932 33 H 0.016 0.984 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.670 -10.412 -6.832 13.300 hybrid contribution -0.247 0.510 1.334 1.449 sum -4.917 -9.901 -5.498 12.347 Atomic orbital electron populations 1.21687 0.94883 1.02028 1.01748 1.22196 0.97158 0.95414 1.03689 1.21978 0.91706 0.93718 0.87284 0.91146 1.86569 1.76413 1.58217 1.15927 1.22327 0.95568 0.90326 0.98327 0.95035 1.21776 1.00409 1.00050 0.97018 1.60411 1.04809 1.08192 1.56352 1.21157 0.90981 0.95370 0.93096 1.19004 0.87239 0.93398 0.97969 1.20557 1.22879 1.17668 0.91386 0.93440 1.25565 0.97306 0.98377 0.95968 1.70100 1.44926 1.39814 0.99823 0.85750 0.78645 0.80769 0.77949 1.19545 1.20806 1.21100 1.22482 1.03301 1.00124 0.95181 1.22967 1.06420 1.01061 0.91765 0.92532 0.91257 0.93800 0.89526 0.90955 0.76934 0.91670 0.93664 0.90162 0.84310 0.93233 0.98413 0.93375 0.92545 0.91032 0.90916 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 9.81 71.98 0.71 -2.18 16 2 C -0.15 -3.04 5.24 30.60 0.16 -2.88 16 3 C 0.11 3.20 2.67 30.59 0.08 3.28 16 4 H 0.07 2.33 8.02 -2.39 -0.02 2.31 16 5 O -0.56 -16.53 12.72 -148.98 -1.90 -18.42 16 6 C 0.04 1.42 2.48 44.91 0.11 1.53 16 7 H 0.03 1.05 7.86 -2.38 -0.02 1.03 16 8 C -0.13 -3.42 8.74 71.98 0.63 -2.79 16 9 N -0.67 -27.56 6.01 -491.58 -2.95 -30.51 16 10 C 0.12 5.59 5.58 86.31 0.48 6.07 16 11 C 0.02 1.22 1.70 -52.90 -0.09 1.13 16 12 C -0.49 -26.63 7.47 25.60 0.19 -26.44 16 13 H 0.05 2.68 7.83 -2.91 -0.02 2.66 16 14 C 0.03 1.51 5.39 84.65 0.46 1.97 16 15 N -0.91 -51.66 13.13 21.45 0.28 -51.37 16 16 Si 0.94 44.09 29.55 68.60 2.03 46.11 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 C -0.17 -8.26 9.70 30.59 0.30 -7.96 16 21 C -0.19 -8.15 9.88 30.62 0.30 -7.85 16 22 H 0.06 1.16 7.82 -2.39 -0.02 1.14 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.09 1.46 6.81 -2.39 -0.02 1.45 16 26 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.38 8.48 7.19 -74.06 -0.53 7.94 16 28 H 0.06 1.61 6.72 -2.38 -0.02 1.59 16 29 H 0.04 1.24 7.38 -2.39 -0.02 1.22 16 30 H 0.08 1.52 6.68 -2.39 -0.02 1.50 16 31 H 0.34 15.88 7.29 -89.70 -0.65 15.23 16 32 H 0.05 2.05 7.12 -2.39 -0.02 2.04 16 33 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 34 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 35 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 36 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.07 3.20 8.14 -2.38 -0.02 3.18 16 38 H 0.09 3.40 8.08 -2.39 -0.02 3.38 16 Total: -1.00 -60.20 305.52 0.63 -59.56 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: -0.15 Total: 30.73 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 3.33 Total: -36.10 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -2.67 Total: -81.88 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -1.90 Total: -18.42 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -60.20 0.63 -59.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386905558.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.694 kcal (2) G-P(sol) polarization free energy of solvation -60.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds