Wall clock time and date at job start Mon Mar 30 2020 03:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47289 * 2 1 4 4 H 1.09002 * 115.54973 * 330.57913 * 3 2 1 5 5 C 1.53001 * 117.51964 * 116.28130 * 3 2 1 6 6 C 1.52999 * 60.00190 * 107.47982 * 5 3 2 7 7 H 1.09004 * 117.49681 * 107.48417 * 6 5 3 8 8 C 1.52998 * 117.50299 * 252.51327 * 6 5 3 9 9 N 1.46895 * 109.47058 * 243.62158 * 8 6 5 10 10 C 1.46900 * 111.00322 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.47441 * 179.97438 * 10 9 8 12 12 O 1.42904 * 109.46984 * 64.99968 * 11 10 9 13 13 C 1.42906 * 113.99787 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.46949 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00128 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00026 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00072 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00304 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47126 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47063 * 119.99668 * 18 16 14 21 21 H 1.48491 * 109.47497 * 240.00184 * 18 16 14 22 22 H 1.09004 * 109.47396 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47504 * 300.00565 * 1 2 3 24 24 H 1.09005 * 109.46851 * 60.00411 * 1 2 3 25 25 H 1.08999 * 109.47504 * 239.99435 * 2 1 3 26 26 H 1.09005 * 109.46851 * 119.99589 * 2 1 3 27 27 H 1.09001 * 117.49733 * 214.97413 * 5 3 2 28 28 H 1.08995 * 117.49577 * 359.97438 * 5 3 2 29 29 H 1.09000 * 109.46823 * 3.61910 * 8 6 5 30 30 H 1.09001 * 109.47577 * 123.61776 * 8 6 5 31 31 H 1.00901 * 110.99774 * 303.95040 * 9 8 6 32 32 H 1.09010 * 109.46640 * 300.00028 * 10 9 8 33 33 H 1.08993 * 109.47312 * 59.99614 * 10 9 8 34 34 H 1.09002 * 109.46869 * 184.99855 * 11 10 9 35 35 H 1.08997 * 109.47255 * 305.00224 * 11 10 9 36 36 H 1.08998 * 109.46857 * 299.99862 * 13 12 11 37 37 H 1.09001 * 109.46999 * 59.99926 * 13 12 11 38 38 H 0.97000 * 120.00031 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3891 2.1713 -0.4831 5 6 2.8421 1.9087 1.2166 6 6 3.5504 1.6578 -0.1161 7 1 3.8931 2.5282 -0.6757 8 6 4.4351 0.4141 -0.2229 9 7 5.8286 0.8221 -0.4453 10 6 6.7093 -0.3487 -0.5525 11 6 8.1487 0.1153 -0.7839 12 8 8.6090 0.8307 0.3644 13 6 9.9505 1.3100 0.2513 14 6 10.3289 2.0454 1.5110 15 1 9.6162 2.1379 2.3172 16 6 11.5847 2.6011 1.6341 17 7 12.4522 2.4898 0.6519 18 14 12.0536 3.5133 3.1953 19 1 10.9085 3.4977 4.1407 20 1 13.2233 2.8489 3.8245 21 1 12.4021 4.9178 2.8624 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.7189 2.9442 1.5340 28 1 3.0062 1.1879 2.0175 29 1 4.3677 -0.1601 0.7011 30 1 4.0987 -0.2005 -1.0579 31 1 5.9073 1.4101 -1.2615 32 1 6.6576 -0.9279 0.3695 33 1 6.3889 -0.9689 -1.3896 34 1 8.7874 -0.7519 -0.9519 35 1 8.1845 0.7674 -1.6566 36 1 10.6263 0.4674 0.1051 37 1 10.0240 1.9867 -0.6000 38 1 13.3355 2.8810 0.7383 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388083701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:17 Heat of formation + Delta-G solvation = -42.139514 kcal Electronic energy + Delta-G solvation = -15260.666458 eV Core-core repulsion = 12717.269945 eV Total energy + Delta-G solvation = -2543.396513 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.62707 -36.93120 -34.98000 -32.64927 -32.13801 -29.29528 -26.86398 -24.74169 -24.09431 -22.24505 -21.62855 -21.24332 -19.45107 -16.36753 -15.95675 -15.87724 -15.17447 -15.02080 -14.49805 -14.42668 -14.14518 -13.46306 -13.28287 -12.69419 -12.60457 -12.33400 -11.99480 -11.71974 -11.56982 -11.40296 -11.16116 -10.95253 -10.75153 -10.71203 -10.43409 -9.99177 -9.89785 -9.79508 -9.01123 -8.75053 -8.12212 -8.06041 -6.05033 -4.05647 3.33514 3.39649 3.47239 3.66930 4.31402 4.40918 4.51106 4.77657 4.86124 4.96048 5.04981 5.13975 5.31498 5.31863 5.40316 5.51312 5.56403 5.58691 5.73915 5.75475 5.77149 5.85611 5.91137 5.94672 6.05512 6.13140 6.20169 6.26002 6.35786 7.16585 7.25873 7.50194 7.61672 7.87634 8.23570 8.68734 9.09821 9.59108 11.06793 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039267 B = 0.004033 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.897712 B = 6941.108418 C = 7469.980106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.155 4.155 4 H 0.101 0.899 5 C -0.168 4.168 6 C -0.142 4.142 7 H 0.106 0.894 8 C 0.092 3.908 9 N -0.675 5.675 10 C 0.065 3.935 11 C 0.065 3.935 12 O -0.380 6.380 13 C 0.193 3.807 14 C -0.509 4.509 15 H 0.067 0.933 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.907 3.093 19 H -0.270 1.270 20 H -0.283 1.283 21 H -0.283 1.283 22 H 0.052 0.948 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.339 0.661 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.040 0.960 35 H 0.034 0.966 36 H 0.002 0.998 37 H 0.003 0.997 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.048 -4.847 -3.786 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.174 4.174 4 H 0.119 0.881 5 C -0.205 4.205 6 C -0.160 4.160 7 H 0.124 0.876 8 C -0.037 4.037 9 N -0.306 5.306 10 C -0.064 4.064 11 C -0.013 4.013 12 O -0.300 6.300 13 C 0.118 3.882 14 C -0.547 4.547 15 H 0.086 0.914 16 C -0.147 4.147 17 N -0.541 5.541 18 Si 0.734 3.266 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.209 1.209 22 H 0.071 0.929 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.157 0.843 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.020 0.980 37 H 0.021 0.979 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.840 -4.680 -2.991 20.602 hybrid contribution 0.404 0.198 -0.452 0.638 sum -19.435 -4.482 -3.443 20.240 Atomic orbital electron populations 1.21746 0.95689 1.01398 1.01773 1.21095 0.95676 0.94455 1.01962 1.22488 0.93633 0.97901 1.03370 0.88065 1.23109 1.03628 1.02213 0.91500 1.22314 0.92281 1.00079 1.01351 0.87634 1.21467 0.87550 0.94497 1.00173 1.60272 1.05249 1.19243 1.45831 1.21973 0.92144 0.91797 1.00455 1.22230 0.93147 0.95349 0.90593 1.87964 1.32827 1.72754 1.36410 1.20191 0.77362 0.93113 0.97495 1.21118 0.98497 1.33617 1.01471 0.91437 1.24957 0.96010 0.96488 0.97218 1.69980 1.06375 1.45772 1.31958 0.86289 0.78410 0.79174 0.82684 1.19435 1.20926 1.20892 0.92874 0.92660 0.92845 0.91803 0.91804 0.88998 0.88759 0.91089 0.95527 0.84317 0.90465 0.94974 0.94210 0.94799 0.98004 0.97899 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.87 37.16 0.37 -0.71 16 2 C -0.09 -0.81 5.29 -26.73 -0.14 -0.95 16 3 C -0.16 -1.48 5.73 -90.61 -0.52 -2.00 16 4 H 0.10 0.90 8.08 -51.93 -0.42 0.48 16 5 C -0.17 -1.82 9.82 -26.73 -0.26 -2.09 16 6 C -0.14 -1.63 5.95 -90.62 -0.54 -2.16 16 7 H 0.11 1.24 8.13 -51.93 -0.42 0.82 16 8 C 0.09 1.15 5.05 -3.83 -0.02 1.13 16 9 N -0.67 -10.35 6.45 -113.78 -0.73 -11.08 16 10 C 0.07 1.01 6.07 -3.82 -0.02 0.99 16 11 C 0.07 1.24 6.22 37.16 0.23 1.47 16 12 O -0.38 -9.58 10.27 -35.23 -0.36 -9.94 16 13 C 0.19 5.47 5.69 36.00 0.20 5.68 16 14 C -0.51 -15.47 9.43 -34.44 -0.32 -15.80 16 15 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 16 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.56 13.29 55.43 0.74 -26.83 16 18 Si 0.91 22.37 29.54 -169.99 -5.02 17.35 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.54 7.60 -51.93 -0.39 0.15 16 26 H 0.06 0.56 7.88 -51.93 -0.41 0.15 16 27 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.09 1.04 7.92 -51.93 -0.41 0.63 16 29 H 0.07 0.91 7.88 -51.93 -0.41 0.50 16 30 H 0.03 0.30 7.60 -51.93 -0.39 -0.09 16 31 H 0.34 4.86 8.72 -39.29 -0.34 4.52 16 32 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 33 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 38 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 316.81 15.07 4.77 4.77 Total: -1.00 -32.05 316.81 -8.71 -40.76 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -6.98 Total: -2.09 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: -1.13 Total: -12.95 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.00 Total: -37.91 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: -0.36 Total: -9.94 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.05 -8.71 -40.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388083701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.382 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds