Wall clock time and date at job start Mon Mar 30 2020 03:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47289 * 2 1 4 4 H 1.09002 * 115.54973 * 330.57913 * 3 2 1 5 5 C 1.53001 * 117.51964 * 116.28130 * 3 2 1 6 6 C 1.52999 * 60.00190 * 107.47982 * 5 3 2 7 7 H 1.09004 * 117.49681 * 107.48417 * 6 5 3 8 8 C 1.52998 * 117.50299 * 252.51327 * 6 5 3 9 9 N 1.46895 * 109.47058 * 243.62158 * 8 6 5 10 10 C 1.46900 * 111.00322 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.47441 * 179.97438 * 10 9 8 12 12 O 1.42904 * 109.46984 * 64.99968 * 11 10 9 13 13 C 1.42906 * 113.99787 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.46949 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00128 * 359.97438 * 14 13 12 16 16 C 1.37873 * 120.00026 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00072 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00304 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47126 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47063 * 119.99668 * 18 16 14 21 21 H 1.48491 * 109.47497 * 240.00184 * 18 16 14 22 22 H 1.09004 * 109.47396 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47504 * 300.00565 * 1 2 3 24 24 H 1.09005 * 109.46851 * 60.00411 * 1 2 3 25 25 H 1.08999 * 109.47504 * 239.99435 * 2 1 3 26 26 H 1.09005 * 109.46851 * 119.99589 * 2 1 3 27 27 H 1.09001 * 117.49733 * 214.97413 * 5 3 2 28 28 H 1.08995 * 117.49577 * 359.97438 * 5 3 2 29 29 H 1.09000 * 109.46823 * 3.61910 * 8 6 5 30 30 H 1.09001 * 109.47577 * 123.61776 * 8 6 5 31 31 H 1.00901 * 110.99774 * 303.95040 * 9 8 6 32 32 H 1.09010 * 109.46640 * 300.00028 * 10 9 8 33 33 H 1.08993 * 109.47312 * 59.99614 * 10 9 8 34 34 H 1.09002 * 109.46869 * 184.99855 * 11 10 9 35 35 H 1.08997 * 109.47255 * 305.00224 * 11 10 9 36 36 H 1.08998 * 109.46857 * 299.99862 * 13 12 11 37 37 H 1.09001 * 109.46999 * 59.99926 * 13 12 11 38 38 H 0.97000 * 120.00031 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3891 2.1713 -0.4831 5 6 2.8421 1.9087 1.2166 6 6 3.5504 1.6578 -0.1161 7 1 3.8931 2.5282 -0.6757 8 6 4.4351 0.4141 -0.2229 9 7 5.8286 0.8221 -0.4453 10 6 6.7093 -0.3487 -0.5525 11 6 8.1487 0.1153 -0.7839 12 8 8.6090 0.8307 0.3644 13 6 9.9505 1.3100 0.2513 14 6 10.3289 2.0454 1.5110 15 1 9.6162 2.1379 2.3172 16 6 11.5847 2.6011 1.6341 17 7 12.4522 2.4898 0.6519 18 14 12.0536 3.5133 3.1953 19 1 10.9085 3.4977 4.1407 20 1 13.2233 2.8489 3.8245 21 1 12.4021 4.9178 2.8624 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 2.7189 2.9442 1.5340 28 1 3.0062 1.1879 2.0175 29 1 4.3677 -0.1601 0.7011 30 1 4.0987 -0.2005 -1.0579 31 1 5.9073 1.4101 -1.2615 32 1 6.6576 -0.9279 0.3695 33 1 6.3889 -0.9689 -1.3896 34 1 8.7874 -0.7519 -0.9519 35 1 8.1845 0.7674 -1.6566 36 1 10.6263 0.4674 0.1051 37 1 10.0240 1.9867 -0.6000 38 1 13.3355 2.8810 0.7383 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388083701.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:16 Heat of formation + Delta-G solvation = -63.097257 kcal Electronic energy + Delta-G solvation = -15261.575254 eV Core-core repulsion = 12717.269945 eV Total energy + Delta-G solvation = -2544.305309 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.54022 -38.64342 -36.32723 -34.83752 -32.89180 -30.78159 -28.90477 -25.96078 -24.76190 -24.45867 -22.88650 -22.21519 -20.30177 -18.61921 -17.57463 -17.02665 -16.65690 -16.40364 -15.97601 -15.63298 -15.21022 -14.96120 -14.58176 -14.14828 -13.72775 -13.42430 -13.31470 -13.02071 -12.85925 -12.70314 -12.62806 -12.31054 -12.28869 -12.10088 -11.79601 -11.66904 -11.24494 -10.87007 -10.76217 -10.65186 -10.18620 -9.22269 -8.31697 -6.43547 1.39950 1.41679 1.56803 2.35901 2.80093 3.01795 3.22131 3.29645 3.72795 3.94756 4.05901 4.21931 4.25499 4.32028 4.46496 4.50889 4.54714 4.62836 4.64545 4.75510 4.82262 4.83378 4.89335 4.98999 5.00760 5.18373 5.19646 5.23391 5.30237 5.34963 5.51826 5.56425 5.98063 6.13631 6.48170 6.58770 6.87346 7.28838 8.80993 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.039267 B = 0.004033 C = 0.003747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.897712 B = 6941.108418 C = 7469.980106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.134 4.134 4 H 0.112 0.888 5 C -0.179 4.179 6 C -0.157 4.157 7 H 0.100 0.900 8 C 0.099 3.901 9 N -0.700 5.700 10 C 0.075 3.925 11 C 0.054 3.946 12 O -0.398 6.398 13 C 0.208 3.792 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.984 3.016 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.270 1.270 22 H 0.060 0.940 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.093 0.907 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.342 0.658 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.049 0.951 35 H 0.040 0.960 36 H -0.015 1.015 37 H -0.016 1.016 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.037 -4.828 -3.455 21.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.153 4.153 4 H 0.130 0.870 5 C -0.216 4.216 6 C -0.175 4.175 7 H 0.118 0.882 8 C -0.030 4.030 9 N -0.332 5.332 10 C -0.054 4.054 11 C -0.023 4.023 12 O -0.318 6.318 13 C 0.133 3.867 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.807 3.193 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.195 1.195 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.161 0.839 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.002 0.998 37 H 0.001 0.999 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -20.849 -4.677 -2.679 21.535 hybrid contribution 0.675 0.150 -0.631 0.936 sum -20.174 -4.527 -3.310 20.939 Atomic orbital electron populations 1.21731 0.94569 1.02058 1.02047 1.21126 0.96655 0.93584 1.01924 1.22553 0.92332 0.98788 1.01616 0.87021 1.23161 1.04461 1.02349 0.91597 1.22302 0.93625 0.99684 1.01931 0.88229 1.21426 0.86110 0.95030 1.00396 1.60238 1.06900 1.19636 1.46437 1.21873 0.89819 0.92101 1.01571 1.22611 0.95550 0.95196 0.88965 1.87916 1.30942 1.73503 1.39392 1.19810 0.78804 0.91919 0.96210 1.21416 0.99358 1.35399 1.02155 0.92307 1.25977 0.95471 0.96815 1.01076 1.70077 1.06945 1.46060 1.34036 0.85124 0.78327 0.78025 0.77847 1.18977 1.19498 1.19548 0.92079 0.92694 0.92273 0.91457 0.92225 0.88852 0.89199 0.91773 0.93820 0.83909 0.91152 0.91306 0.93285 0.94174 0.99761 0.99859 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.87 71.98 0.71 -1.11 16 2 C -0.10 -1.45 5.29 30.59 0.16 -1.29 16 3 C -0.13 -2.35 5.73 -10.79 -0.06 -2.41 16 4 H 0.11 1.74 8.08 -2.39 -0.02 1.72 16 5 C -0.18 -3.77 9.82 30.59 0.30 -3.47 16 6 C -0.16 -3.46 5.95 -10.79 -0.06 -3.53 16 7 H 0.10 2.31 8.13 -2.38 -0.02 2.29 16 8 C 0.10 2.34 5.05 86.30 0.44 2.77 16 9 N -0.70 -20.96 6.45 -513.90 -3.31 -24.27 16 10 C 0.08 2.24 6.07 86.30 0.52 2.77 16 11 C 0.05 2.06 6.22 71.98 0.45 2.51 16 12 O -0.40 -20.44 10.27 -148.98 -1.53 -21.97 16 13 C 0.21 12.15 5.69 71.23 0.41 12.55 16 14 C -0.55 -33.79 9.43 25.60 0.24 -33.55 16 15 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 16 C 0.00 0.28 5.46 84.65 0.46 0.74 16 17 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 18 Si 0.98 45.60 29.54 68.60 2.03 47.63 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 25 H 0.07 0.99 7.60 -2.39 -0.02 0.98 16 26 H 0.06 0.96 7.88 -2.38 -0.02 0.95 16 27 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.09 1.96 7.92 -2.39 -0.02 1.94 16 29 H 0.06 1.59 7.88 -2.39 -0.02 1.58 16 30 H 0.04 0.89 7.60 -2.39 -0.02 0.87 16 31 H 0.34 9.62 8.72 -89.69 -0.78 8.83 16 32 H 0.07 2.19 8.14 -2.38 -0.02 2.18 16 33 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 37 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -68.42 316.81 1.25 -67.18 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.22 Total: 12.39 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: 3.56 Total: -24.02 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -3.03 Total: -81.20 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -1.53 Total: -21.97 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -68.42 1.25 -67.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388083701.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.078 kcal (2) G-P(sol) polarization free energy of solvation -68.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds