Wall clock time and date at job start Mon Mar 30 2020 03:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47060 * 2 1 4 4 H 1.09001 * 109.46968 * 305.65405 * 3 2 1 5 5 N 1.46903 * 109.47187 * 185.66045 * 3 2 1 6 6 C 1.46900 * 111.00115 * 86.23776 * 5 3 2 7 7 H 1.09000 * 109.47403 * 326.26592 * 6 5 3 8 8 C 1.53002 * 109.46877 * 86.26507 * 6 5 3 9 9 C 1.50706 * 109.47095 * 206.26194 * 6 5 3 10 10 H 1.07994 * 120.00044 * 0.02562 * 9 6 5 11 11 C 1.37874 * 119.99678 * 180.02562 * 9 6 5 12 12 N 1.31512 * 120.00258 * 0.02562 * 11 9 6 13 13 Si 1.86804 * 119.99913 * 180.02562 * 11 9 6 14 14 H 1.48501 * 109.46873 * 359.97438 * 13 11 9 15 15 H 1.48495 * 109.47059 * 120.00038 * 13 11 9 16 16 H 1.48496 * 109.46951 * 240.00224 * 13 11 9 17 17 C 1.52997 * 109.47394 * 65.65896 * 3 2 1 18 18 H 1.08995 * 109.82347 * 300.70184 * 17 3 2 19 19 C 1.54384 * 109.83024 * 179.81495 * 17 3 2 20 20 C 1.55454 * 102.18303 * 219.18071 * 19 17 3 21 21 C 1.54938 * 100.99046 * 34.04295 * 20 19 17 22 22 O 1.43232 * 109.83024 * 61.58766 * 17 3 2 23 23 H 1.08996 * 109.46868 * 54.35806 * 1 2 3 24 24 H 1.08995 * 109.47156 * 174.35736 * 1 2 3 25 25 H 1.09003 * 109.47046 * 294.36392 * 1 2 3 26 26 H 1.09000 * 109.47090 * 119.99340 * 2 1 3 27 27 H 1.08996 * 109.47443 * 239.99499 * 2 1 3 28 28 H 1.00904 * 110.99663 * 322.28903 * 5 3 2 29 29 H 1.09000 * 109.47035 * 59.99860 * 8 6 5 30 30 H 1.08999 * 109.47138 * 179.97438 * 8 6 5 31 31 H 1.09001 * 109.46939 * 299.99915 * 8 6 5 32 32 H 0.97003 * 120.00230 * 180.02562 * 12 11 9 33 33 H 1.09001 * 110.84508 * 337.31605 * 19 17 3 34 34 H 1.08999 * 110.84769 * 100.93790 * 19 17 3 35 35 H 1.08999 * 111.06015 * 276.11962 * 20 19 17 36 36 H 1.09004 * 111.17828 * 152.01100 * 20 19 17 37 37 H 1.09005 * 110.31212 * 204.69109 * 21 20 19 38 38 H 1.09000 * 110.40268 * 82.56288 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5963 1.9847 -0.8350 5 7 3.5026 1.4448 -0.1366 6 6 3.8994 1.4007 -1.5503 7 1 3.1774 0.8081 -2.1121 8 6 3.9401 2.8228 -2.1132 9 6 5.2648 0.7740 -1.6695 10 1 5.7855 0.4415 -0.7838 11 6 5.8492 0.6254 -2.9094 12 7 5.2153 1.0309 -3.9880 13 14 7.5413 -0.1520 -3.0573 14 1 8.0370 -0.5195 -1.7065 15 1 7.4542 -1.3704 -3.9016 16 1 8.4782 0.8166 -3.6811 17 6 1.6495 2.1216 1.3142 18 1 0.5654 2.1120 1.4274 19 6 2.1643 3.5770 1.3249 20 6 2.6357 3.7474 2.7964 21 6 3.1545 2.3210 3.1075 22 8 2.2589 1.4368 2.4148 23 1 -0.3633 0.5988 -0.8351 24 1 -0.3633 -1.0226 -0.1010 25 1 -0.3633 0.4240 0.9362 26 1 1.8933 -0.5137 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 3.9151 0.6816 0.3787 29 1 4.6621 3.4154 -1.5514 30 1 4.2349 2.7902 -3.1620 31 1 2.9525 3.2761 -2.0269 32 1 5.6263 0.9260 -4.8604 33 1 2.9986 3.6984 0.6340 34 1 1.3603 4.2746 1.0904 35 1 1.8021 4.0128 3.4465 36 1 3.4377 4.4819 2.8704 37 1 3.1190 2.1310 4.1803 38 1 4.1715 2.1970 2.7354 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389254020.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:39 Heat of formation + Delta-G solvation = -80.454219 kcal Electronic energy + Delta-G solvation = -16930.981881 eV Core-core repulsion = 14385.923918 eV Total energy + Delta-G solvation = -2545.057963 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.59470 -37.84658 -35.42284 -33.31077 -32.79694 -30.59276 -29.29811 -27.28769 -25.51567 -23.52650 -22.27156 -21.98159 -20.75881 -18.53034 -17.61509 -16.96684 -16.73496 -15.70905 -15.56023 -15.50213 -14.85318 -14.61391 -14.03551 -13.86717 -13.56688 -13.33485 -13.05218 -12.82953 -12.55800 -12.50643 -12.40088 -12.28682 -12.18990 -11.97985 -11.87386 -11.68567 -11.54709 -11.29996 -10.88135 -10.57411 -10.20543 -8.87820 -8.12896 -6.26154 1.39119 1.41017 1.52667 2.40871 3.09568 3.15695 3.61115 3.85406 3.97256 4.11857 4.20807 4.23791 4.46076 4.51948 4.60583 4.68750 4.84620 4.88063 4.92793 5.01186 5.05297 5.11189 5.12958 5.14634 5.18865 5.25278 5.31933 5.45240 5.52608 5.57542 5.70727 5.91583 6.24584 6.28694 6.54288 6.83445 7.04405 7.44268 8.92613 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.007787 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.496647 B = 3595.005508 C = 3899.516014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.143 4.143 3 C 0.077 3.923 4 H 0.064 0.936 5 N -0.668 5.668 6 C 0.218 3.782 7 H -0.032 1.032 8 C -0.109 4.109 9 C -0.533 4.533 10 H 0.054 0.946 11 C 0.013 3.987 12 N -0.917 5.917 13 Si 0.959 3.041 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.279 1.279 17 C 0.098 3.902 18 H 0.089 0.911 19 C -0.148 4.148 20 C -0.143 4.143 21 C 0.051 3.949 22 O -0.393 6.393 23 H 0.052 0.948 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.031 0.969 28 H 0.328 0.672 29 H 0.026 0.974 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.261 0.739 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 3.545 11.312 14.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.182 4.182 3 C -0.034 4.034 4 H 0.082 0.918 5 N -0.297 5.297 6 C 0.109 3.891 7 H -0.014 1.014 8 C -0.167 4.167 9 C -0.572 4.572 10 H 0.072 0.928 11 C -0.186 4.186 12 N -0.557 5.557 13 Si 0.785 3.215 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.205 1.205 17 C 0.040 3.960 18 H 0.107 0.893 19 C -0.185 4.185 20 C -0.181 4.181 21 C -0.026 4.026 22 O -0.312 6.312 23 H 0.071 0.929 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.146 0.854 29 H 0.046 0.954 30 H 0.072 0.928 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.532 4.040 11.212 14.099 hybrid contribution 0.877 -1.232 -0.970 1.796 sum -6.655 2.809 10.243 12.534 Atomic orbital electron populations 1.21691 0.93925 1.01944 1.02107 1.22059 0.97849 0.97895 1.00425 1.22006 0.89401 0.94902 0.97121 0.91810 1.60667 1.06774 1.50104 1.12182 1.18879 0.93200 0.92645 0.84326 1.01436 1.21516 0.97028 0.97037 1.01151 1.21620 1.03320 1.39407 0.92806 0.92756 1.25696 1.01339 0.96029 0.95526 1.70028 1.39344 1.47910 0.98406 0.85492 0.79881 0.78035 0.78116 1.19265 1.20738 1.20524 1.22764 0.96563 0.91356 0.85270 0.89309 1.23116 1.02052 0.95460 0.97899 1.23190 1.01893 0.97178 0.95794 1.23386 0.93231 0.88988 0.96953 1.88324 1.60332 1.38889 1.43676 0.92862 0.92350 0.91334 0.92026 0.95018 0.85448 0.95433 0.92766 0.95985 0.92940 0.91020 0.89566 0.89315 0.89581 0.88784 0.93630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.55 71.98 0.69 -3.06 16 2 C -0.14 -4.95 5.30 30.59 0.16 -4.79 16 3 C 0.08 2.76 1.67 44.91 0.07 2.83 16 4 H 0.06 2.43 7.21 -2.39 -0.02 2.42 16 5 N -0.67 -28.56 4.98 -473.29 -2.36 -30.92 16 6 C 0.22 11.21 2.39 44.17 0.11 11.32 16 7 H -0.03 -1.83 7.19 -2.39 -0.02 -1.85 16 8 C -0.11 -5.45 9.19 71.98 0.66 -4.79 16 9 C -0.53 -29.79 8.59 25.60 0.22 -29.57 16 10 H 0.05 3.02 7.60 -2.91 -0.02 2.99 16 11 C 0.01 0.73 5.30 84.65 0.45 1.18 16 12 N -0.92 -53.46 11.32 21.45 0.24 -53.22 16 13 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 15 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 17 C 0.10 2.92 3.10 31.06 0.10 3.02 16 18 H 0.09 2.30 6.71 -2.39 -0.02 2.29 16 19 C -0.15 -4.03 6.44 31.91 0.21 -3.83 16 20 C -0.14 -3.21 7.16 32.10 0.23 -2.98 16 21 C 0.05 1.33 7.78 72.64 0.57 1.90 16 22 O -0.39 -12.27 10.18 -148.98 -1.52 -13.79 16 23 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.07 1.63 6.85 -2.39 -0.02 1.62 16 26 H 0.06 2.16 7.58 -2.39 -0.02 2.15 16 27 H 0.03 1.27 7.49 -2.39 -0.02 1.25 16 28 H 0.33 14.66 7.92 -89.69 -0.71 13.95 16 29 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 2.99 6.07 -2.39 -0.01 2.97 16 31 H 0.02 0.97 7.54 -2.39 -0.02 0.95 16 32 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 33 H 0.07 2.42 7.17 -2.39 -0.02 2.40 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -60.31 296.56 2.16 -58.15 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.31 Total: 22.27 kcal Atomic # 6 Polarization: -32.23 SS G_CDS: 3.46 Total: -28.77 kcal Atomic # 7 Polarization: -82.02 SS G_CDS: -2.11 Total: -84.13 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -1.52 Total: -13.79 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -60.31 2.16 -58.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389254020.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.305 kcal (2) G-P(sol) polarization free energy of solvation -60.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds