Wall clock time and date at job start Mon Mar 30 2020 03:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47055 * 2 1 4 4 H 1.08997 * 109.47342 * 177.35280 * 3 2 1 5 5 N 1.46905 * 109.46771 * 57.35608 * 3 2 1 6 6 C 1.46900 * 111.00054 * 85.60740 * 5 3 2 7 7 H 1.08996 * 109.46899 * 328.19756 * 6 5 3 8 8 C 1.52993 * 109.47456 * 88.19804 * 6 5 3 9 9 C 1.50697 * 109.46802 * 208.20145 * 6 5 3 10 10 H 1.07992 * 120.00494 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99575 * 179.97438 * 9 6 5 12 12 N 1.31521 * 119.99837 * 179.97438 * 11 9 6 13 13 Si 1.86798 * 120.00342 * 0.02562 * 11 9 6 14 14 H 1.48499 * 109.47504 * 89.99642 * 13 11 9 15 15 H 1.48502 * 109.46593 * 329.99326 * 13 11 9 16 16 H 1.48501 * 109.47045 * 210.00127 * 13 11 9 17 17 C 1.52995 * 109.47398 * 297.35719 * 3 2 1 18 18 H 1.09005 * 110.27700 * 59.29449 * 17 3 2 19 19 C 1.54949 * 110.31312 * 181.38898 * 17 3 2 20 20 C 1.55410 * 100.89421 * 155.28737 * 19 17 3 21 21 C 1.54387 * 102.30996 * 325.99048 * 20 19 17 22 22 O 1.43233 * 107.58711 * 21.28659 * 21 20 19 23 23 H 1.09007 * 109.47402 * 181.29892 * 1 2 3 24 24 H 1.09003 * 109.47023 * 301.29408 * 1 2 3 25 25 H 1.09003 * 109.47653 * 61.29350 * 1 2 3 26 26 H 1.09006 * 109.46841 * 240.00744 * 2 1 3 27 27 H 1.08999 * 109.47300 * 120.00248 * 2 1 3 28 28 H 1.00906 * 110.99596 * 209.55801 * 5 3 2 29 29 H 1.09001 * 109.47598 * 180.02562 * 8 6 5 30 30 H 1.09002 * 109.47234 * 300.00469 * 8 6 5 31 31 H 1.09003 * 109.46806 * 59.99837 * 8 6 5 32 32 H 0.96998 * 119.99672 * 180.02562 * 12 11 9 33 33 H 1.08997 * 111.12075 * 273.27923 * 19 17 3 34 34 H 1.09005 * 111.11821 * 37.43670 * 19 17 3 35 35 H 1.09004 * 110.88039 * 207.75628 * 20 19 17 36 36 H 1.08993 * 110.93639 * 84.25191 * 20 19 17 37 37 H 1.09001 * 109.83120 * 261.77530 * 21 20 19 38 38 H 1.09000 * 109.82953 * 140.80071 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1289 1.4430 0.0475 5 7 1.4987 2.1532 1.1663 6 6 2.3395 1.9370 2.3513 7 1 2.7898 0.9456 2.3013 8 6 3.4423 2.9965 2.3944 9 6 1.4930 2.0421 3.5936 10 1 0.4364 2.2492 3.5113 11 6 2.0678 1.8738 4.8356 12 7 1.3292 1.9660 5.9199 13 14 3.8957 1.5162 4.9783 14 1 4.6438 2.7950 5.0801 15 1 4.3495 0.7715 3.7764 16 1 4.1467 0.6978 6.1917 17 6 1.5850 2.1444 -1.2811 18 1 0.4970 2.1405 -1.3480 19 6 2.1209 3.5978 -1.3176 20 6 2.1324 3.8683 -2.8479 21 6 2.4863 2.4806 -3.4248 22 8 2.1575 1.5024 -2.4316 23 1 -0.3634 -1.0274 0.0233 24 1 -0.3633 0.5338 0.8782 25 1 -0.3634 0.4936 -0.9013 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.3930 3.1378 0.9727 29 1 4.0665 2.8358 3.2735 30 1 4.0545 2.9205 1.4957 31 1 2.9920 3.9879 2.4444 32 1 1.7336 1.8479 6.7936 33 1 1.4441 4.2789 -0.8018 34 1 3.1266 3.6561 -0.9013 35 1 2.8956 4.6022 -3.1070 36 1 1.1511 4.1932 -3.1934 37 1 3.5517 2.4347 -3.6504 38 1 1.9072 2.2978 -4.3299 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389254021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:41 Heat of formation + Delta-G solvation = -50.943290 kcal Electronic energy + Delta-G solvation = -16871.628234 eV Core-core repulsion = 14327.849961 eV Total energy + Delta-G solvation = -2543.778273 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.63701 -36.76251 -33.61445 -32.17314 -31.55084 -29.59693 -27.94311 -25.15792 -24.65340 -22.55465 -21.50959 -20.32431 -19.06105 -16.94222 -16.63494 -15.93152 -15.11117 -14.74946 -14.46611 -13.88073 -13.40450 -13.12675 -12.94759 -12.71401 -12.42879 -12.23050 -11.86038 -11.67591 -11.44210 -11.35022 -11.12362 -10.89206 -10.59669 -10.48000 -10.21641 -10.16280 -9.97011 -9.51870 -9.24313 -9.09626 -8.54495 -7.40673 -6.02326 -3.99027 3.26326 3.37395 3.39541 3.82828 4.42307 4.48499 4.73981 4.82564 5.13143 5.19167 5.26782 5.28960 5.47797 5.63014 5.68698 5.69500 5.78328 5.87923 5.96619 6.01504 6.16598 6.20937 6.24534 6.37189 6.48945 6.52801 6.61442 6.77561 6.84381 7.08794 7.09734 7.17278 7.75086 7.93764 8.33958 8.72074 9.09688 9.60781 11.11264 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035832 B = 0.007570 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.237743 B = 3697.862674 C = 3994.683698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C 0.088 3.912 4 H 0.039 0.961 5 N -0.660 5.660 6 C 0.184 3.816 7 H 0.034 0.966 8 C -0.182 4.182 9 C -0.494 4.494 10 H 0.082 0.918 11 C 0.067 3.933 12 N -0.902 5.902 13 Si 0.884 3.116 14 H -0.282 1.282 15 H -0.270 1.270 16 H -0.297 1.297 17 C 0.081 3.919 18 H 0.081 0.919 19 C -0.157 4.157 20 C -0.155 4.155 21 C 0.051 3.949 22 O -0.378 6.378 23 H 0.037 0.963 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.328 0.672 29 H 0.045 0.955 30 H 0.025 0.975 31 H 0.054 0.946 32 H 0.263 0.737 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.576 2.247 -16.276 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C -0.022 4.022 4 H 0.057 0.943 5 N -0.292 5.292 6 C 0.075 3.925 7 H 0.052 0.948 8 C -0.241 4.241 9 C -0.532 4.532 10 H 0.100 0.900 11 C -0.134 4.134 12 N -0.541 5.541 13 Si 0.715 3.285 14 H -0.209 1.209 15 H -0.195 1.195 16 H -0.225 1.225 17 C 0.024 3.976 18 H 0.098 0.902 19 C -0.195 4.195 20 C -0.192 4.192 21 C -0.026 4.026 22 O -0.297 6.297 23 H 0.056 0.944 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.147 0.853 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.162 1.502 -15.949 16.165 hybrid contribution 1.923 0.731 0.027 2.057 sum 4.085 2.233 -15.922 16.589 Atomic orbital electron populations 1.21639 0.95582 1.00172 1.02304 1.21408 0.96889 0.95230 1.00804 1.21568 0.96734 0.95218 0.88697 0.94312 1.60690 1.51676 1.14563 1.02263 1.19673 0.89605 0.93715 0.89479 0.94778 1.22866 1.00332 1.02108 0.98793 1.20973 0.97044 1.47525 0.87692 0.89973 1.24935 0.97407 0.95212 0.95879 1.69885 1.35620 1.50784 0.97780 0.86926 0.86689 0.77900 0.76998 1.20891 1.19498 1.22453 1.23204 0.97950 0.90314 0.86170 0.90152 1.23383 1.02719 0.97495 0.95889 1.23110 1.02575 0.97685 0.95872 1.23068 0.99956 0.87616 0.91923 1.88406 1.82489 1.31942 1.26829 0.94392 0.90379 0.94039 0.92600 0.92072 0.85340 0.93658 0.95638 0.92733 0.92754 0.89430 0.90473 0.90363 0.90619 0.91793 0.91806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.43 37.15 0.35 -1.97 16 2 C -0.11 -1.83 5.68 -26.73 -0.15 -1.99 16 3 C 0.09 1.53 1.92 -67.71 -0.13 1.40 16 4 H 0.04 0.72 7.36 -51.93 -0.38 0.33 16 5 N -0.66 -12.97 5.15 -100.96 -0.52 -13.49 16 6 C 0.18 4.28 1.96 -68.87 -0.14 4.14 16 7 H 0.03 0.84 6.24 -51.93 -0.32 0.52 16 8 C -0.18 -3.89 8.63 37.15 0.32 -3.57 16 9 C -0.49 -13.77 9.42 -34.44 -0.32 -14.10 16 10 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 11 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 12 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 13 Si 0.88 22.06 24.37 -169.99 -4.14 17.92 16 14 H -0.28 -6.85 6.87 56.52 0.39 -6.47 16 15 H -0.27 -6.50 6.53 56.52 0.37 -6.13 16 16 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 17 C 0.08 1.18 2.78 -25.70 -0.07 1.11 16 18 H 0.08 1.19 6.54 -51.93 -0.34 0.85 16 19 C -0.16 -1.94 5.62 -24.42 -0.14 -2.08 16 20 C -0.15 -1.55 7.02 -24.72 -0.17 -1.72 16 21 C 0.05 0.57 7.80 37.88 0.30 0.87 16 22 O -0.38 -5.59 10.49 -35.23 -0.37 -5.96 16 23 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.08 1.48 7.49 -51.93 -0.39 1.09 16 25 H 0.04 0.63 6.56 -51.93 -0.34 0.29 16 26 H 0.06 0.92 7.73 -51.93 -0.40 0.52 16 27 H 0.06 1.16 7.55 -51.93 -0.39 0.77 16 28 H 0.33 5.98 6.62 -39.29 -0.26 5.72 16 29 H 0.04 1.03 3.27 -51.93 -0.17 0.86 16 30 H 0.02 0.47 7.68 -51.93 -0.40 0.07 16 31 H 0.05 1.11 8.12 -51.93 -0.42 0.69 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.09 1.02 7.64 -51.93 -0.40 0.62 16 34 H 0.08 1.01 8.06 -51.93 -0.42 0.59 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 288.10 15.07 4.34 4.34 Total: -1.00 -29.93 288.10 -6.52 -36.45 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -6.35 Total: 3.69 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -0.25 Total: -16.07 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.25 Total: -40.36 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.37 Total: -5.96 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.14 Total: 17.92 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.93 -6.52 -36.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389254021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.495 kcal (2) G-P(sol) polarization free energy of solvation -29.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds