Wall clock time and date at job start Mon Mar 30 2020 03:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47055 * 2 1 4 4 H 1.08997 * 109.47342 * 177.35280 * 3 2 1 5 5 N 1.46905 * 109.46771 * 57.35608 * 3 2 1 6 6 C 1.46900 * 111.00054 * 85.60740 * 5 3 2 7 7 H 1.08996 * 109.46899 * 328.19756 * 6 5 3 8 8 C 1.52993 * 109.47456 * 88.19804 * 6 5 3 9 9 C 1.50697 * 109.46802 * 208.20145 * 6 5 3 10 10 H 1.07992 * 120.00494 * 359.97438 * 9 6 5 11 11 C 1.37879 * 119.99575 * 179.97438 * 9 6 5 12 12 N 1.31521 * 119.99837 * 179.97438 * 11 9 6 13 13 Si 1.86798 * 120.00342 * 0.02562 * 11 9 6 14 14 H 1.48499 * 109.47504 * 89.99642 * 13 11 9 15 15 H 1.48502 * 109.46593 * 329.99326 * 13 11 9 16 16 H 1.48501 * 109.47045 * 210.00127 * 13 11 9 17 17 C 1.52995 * 109.47398 * 297.35719 * 3 2 1 18 18 H 1.09005 * 110.27700 * 59.29449 * 17 3 2 19 19 C 1.54949 * 110.31312 * 181.38898 * 17 3 2 20 20 C 1.55410 * 100.89421 * 155.28737 * 19 17 3 21 21 C 1.54387 * 102.30996 * 325.99048 * 20 19 17 22 22 O 1.43233 * 107.58711 * 21.28659 * 21 20 19 23 23 H 1.09007 * 109.47402 * 181.29892 * 1 2 3 24 24 H 1.09003 * 109.47023 * 301.29408 * 1 2 3 25 25 H 1.09003 * 109.47653 * 61.29350 * 1 2 3 26 26 H 1.09006 * 109.46841 * 240.00744 * 2 1 3 27 27 H 1.08999 * 109.47300 * 120.00248 * 2 1 3 28 28 H 1.00906 * 110.99596 * 209.55801 * 5 3 2 29 29 H 1.09001 * 109.47598 * 180.02562 * 8 6 5 30 30 H 1.09002 * 109.47234 * 300.00469 * 8 6 5 31 31 H 1.09003 * 109.46806 * 59.99837 * 8 6 5 32 32 H 0.96998 * 119.99672 * 180.02562 * 12 11 9 33 33 H 1.08997 * 111.12075 * 273.27923 * 19 17 3 34 34 H 1.09005 * 111.11821 * 37.43670 * 19 17 3 35 35 H 1.09004 * 110.88039 * 207.75628 * 20 19 17 36 36 H 1.08993 * 110.93639 * 84.25191 * 20 19 17 37 37 H 1.09001 * 109.83120 * 261.77530 * 21 20 19 38 38 H 1.09000 * 109.82953 * 140.80071 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1289 1.4430 0.0475 5 7 1.4987 2.1532 1.1663 6 6 2.3395 1.9370 2.3513 7 1 2.7898 0.9456 2.3013 8 6 3.4423 2.9965 2.3944 9 6 1.4930 2.0421 3.5936 10 1 0.4364 2.2492 3.5113 11 6 2.0678 1.8738 4.8356 12 7 1.3292 1.9660 5.9199 13 14 3.8957 1.5162 4.9783 14 1 4.6438 2.7950 5.0801 15 1 4.3495 0.7715 3.7764 16 1 4.1467 0.6978 6.1917 17 6 1.5850 2.1444 -1.2811 18 1 0.4970 2.1405 -1.3480 19 6 2.1209 3.5978 -1.3176 20 6 2.1324 3.8683 -2.8479 21 6 2.4863 2.4806 -3.4248 22 8 2.1575 1.5024 -2.4316 23 1 -0.3634 -1.0274 0.0233 24 1 -0.3633 0.5338 0.8782 25 1 -0.3634 0.4936 -0.9013 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 1.3930 3.1378 0.9727 29 1 4.0665 2.8358 3.2735 30 1 4.0545 2.9205 1.4957 31 1 2.9920 3.9879 2.4444 32 1 1.7336 1.8479 6.7936 33 1 1.4441 4.2789 -0.8018 34 1 3.1266 3.6561 -0.9013 35 1 2.8956 4.6022 -3.1070 36 1 1.1511 4.1932 -3.1934 37 1 3.5517 2.4347 -3.6504 38 1 1.9072 2.2978 -4.3299 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389254021.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:40 Heat of formation + Delta-G solvation = -71.859694 kcal Electronic energy + Delta-G solvation = -16872.535238 eV Core-core repulsion = 14327.849961 eV Total energy + Delta-G solvation = -2544.685277 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74364 -38.26745 -35.37696 -33.64561 -33.00982 -30.92870 -29.32566 -27.11335 -26.09616 -23.73901 -22.46572 -22.02262 -20.49798 -18.79905 -17.85038 -17.29266 -16.77496 -16.03055 -15.76048 -15.37050 -14.96811 -14.65236 -14.34712 -14.08669 -13.91272 -13.89823 -13.46380 -13.01381 -12.68281 -12.66257 -12.47930 -12.16010 -12.12733 -11.96705 -11.78229 -11.54387 -11.48347 -11.25476 -11.11744 -10.73763 -10.34273 -9.01882 -8.25257 -6.26310 1.28072 1.34927 1.43964 2.32495 2.76680 3.08969 3.51834 3.59692 3.80176 4.01880 4.14351 4.24096 4.33423 4.44404 4.47789 4.52512 4.59063 4.63291 4.70389 4.83334 4.84709 4.87633 4.96944 5.00811 5.08591 5.17324 5.22063 5.28374 5.36830 5.43145 5.64820 5.70796 6.04733 6.14404 6.69633 6.79068 6.81762 7.38277 8.92087 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.035832 B = 0.007570 C = 0.007008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.237743 B = 3697.862674 C = 3994.683698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 C 0.090 3.910 4 H 0.031 0.969 5 N -0.665 5.665 6 C 0.191 3.809 7 H 0.022 0.978 8 C -0.176 4.176 9 C -0.495 4.495 10 H 0.039 0.961 11 C 0.010 3.990 12 N -0.950 5.950 13 Si 0.947 3.053 14 H -0.266 1.266 15 H -0.255 1.255 16 H -0.300 1.300 17 C 0.087 3.913 18 H 0.079 0.921 19 C -0.159 4.159 20 C -0.145 4.145 21 C 0.042 3.958 22 O -0.399 6.399 23 H 0.048 0.952 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.037 0.963 28 H 0.338 0.662 29 H 0.034 0.966 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.264 0.736 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.084 2.921 -18.556 19.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.144 4.144 3 C -0.020 4.020 4 H 0.049 0.951 5 N -0.298 5.298 6 C 0.081 3.919 7 H 0.040 0.960 8 C -0.235 4.235 9 C -0.534 4.534 10 H 0.058 0.942 11 C -0.187 4.187 12 N -0.592 5.592 13 Si 0.775 3.225 14 H -0.192 1.192 15 H -0.180 1.180 16 H -0.228 1.228 17 C 0.029 3.971 18 H 0.097 0.903 19 C -0.196 4.196 20 C -0.182 4.182 21 C -0.034 4.034 22 O -0.318 6.318 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.056 0.944 28 H 0.157 0.843 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.671 2.189 -18.267 18.761 hybrid contribution 1.350 0.497 0.660 1.583 sum 5.021 2.686 -17.607 18.505 Atomic orbital electron populations 1.21545 0.95048 1.00669 1.01675 1.21416 0.97341 0.95456 1.00212 1.21548 0.96133 0.95076 0.89230 0.95064 1.60475 1.51420 1.15528 1.02366 1.19394 0.89761 0.93853 0.88907 0.96014 1.22722 0.99634 1.01412 0.99734 1.21243 0.95789 1.46393 0.89979 0.94238 1.25749 1.02247 0.95240 0.95452 1.70041 1.37892 1.52774 0.98469 0.85888 0.81028 0.78397 0.77185 1.19238 1.17967 1.22774 1.23017 0.97792 0.91309 0.84975 0.90337 1.23384 1.02317 0.95967 0.97973 1.23100 1.04018 0.97469 0.93612 1.23321 1.00894 0.87586 0.91609 1.88373 1.82591 1.33537 1.27299 0.93296 0.93216 0.92421 0.91322 0.94411 0.84318 0.94726 0.92575 0.92107 0.92704 0.88844 0.91026 0.88409 0.89392 0.90919 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.33 9.43 71.98 0.68 -3.65 16 2 C -0.11 -3.64 5.68 30.59 0.17 -3.46 16 3 C 0.09 3.02 1.92 44.91 0.09 3.11 16 4 H 0.03 1.10 7.36 -2.39 -0.02 1.09 16 5 N -0.67 -25.85 5.15 -473.33 -2.44 -28.29 16 6 C 0.19 8.77 1.96 44.17 0.09 8.85 16 7 H 0.02 1.07 6.24 -2.39 -0.01 1.05 16 8 C -0.18 -7.13 8.63 71.98 0.62 -6.51 16 9 C -0.50 -28.28 9.42 25.60 0.24 -28.03 16 10 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 11 C 0.01 0.57 5.45 84.65 0.46 1.03 16 12 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 13 Si 0.95 45.43 24.37 68.60 1.67 47.10 16 14 H -0.27 -12.05 6.87 99.48 0.68 -11.37 16 15 H -0.26 -11.54 6.53 99.48 0.65 -10.89 16 16 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 17 C 0.09 2.35 2.78 31.26 0.09 2.44 16 18 H 0.08 2.16 6.54 -2.38 -0.02 2.15 16 19 C -0.16 -3.49 5.62 32.09 0.18 -3.31 16 20 C -0.14 -2.36 7.02 31.89 0.22 -2.13 16 21 C 0.04 0.80 7.80 72.45 0.56 1.37 16 22 O -0.40 -10.81 10.49 -148.98 -1.56 -12.37 16 23 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.05 1.90 7.49 -2.39 -0.02 1.89 16 25 H 0.06 1.68 6.56 -2.39 -0.02 1.66 16 26 H 0.07 2.17 7.73 -2.38 -0.02 2.15 16 27 H 0.04 1.44 7.55 -2.39 -0.02 1.42 16 28 H 0.34 11.96 6.62 -89.69 -0.59 11.37 16 29 H 0.03 1.47 3.27 -2.39 -0.01 1.46 16 30 H 0.06 1.92 7.68 -2.39 -0.02 1.90 16 31 H 0.06 2.36 8.12 -2.39 -0.02 2.34 16 32 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 33 H 0.09 1.94 7.64 -2.39 -0.02 1.92 16 34 H 0.07 1.66 8.06 -2.38 -0.02 1.64 16 35 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -65.41 288.10 1.73 -63.68 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.35 Total: 19.80 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 3.41 Total: -30.30 kcal Atomic # 7 Polarization: -85.78 SS G_CDS: -2.14 Total: -87.92 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: -1.56 Total: -12.37 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.67 Total: 47.10 kcal Total: -65.41 1.73 -63.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389254021.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.175 kcal (2) G-P(sol) polarization free energy of solvation -65.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds