Wall clock time and date at job start Mon Mar 30 2020 03:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46590 * 2 1 4 4 H 1.08994 * 109.47800 * 53.44614 * 3 2 1 5 5 N 1.46899 * 109.47189 * 293.44488 * 3 2 1 6 6 C 1.46903 * 111.00111 * 141.11649 * 5 3 2 7 7 H 1.08999 * 109.46955 * 34.05427 * 6 5 3 8 8 C 1.52998 * 109.47122 * 274.05167 * 6 5 3 9 9 C 1.50704 * 109.47312 * 154.05082 * 6 5 3 10 10 H 1.07998 * 119.99593 * 0.02562 * 9 6 5 11 11 C 1.37870 * 120.00159 * 180.02562 * 9 6 5 12 12 N 1.31522 * 119.99773 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 120.00136 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.47163 * 90.00276 * 13 11 9 15 15 H 1.48505 * 109.47197 * 209.99815 * 13 11 9 16 16 H 1.48498 * 109.47078 * 329.99963 * 13 11 9 17 17 C 1.53002 * 109.47024 * 173.45082 * 3 2 1 18 18 H 1.09000 * 110.27825 * 66.92793 * 17 3 2 19 19 C 1.54946 * 110.30958 * 189.02253 * 17 3 2 20 20 C 1.55415 * 100.89311 * 155.28535 * 19 17 3 21 21 C 1.54387 * 102.31032 * 325.98839 * 20 19 17 22 22 O 1.43244 * 107.58474 * 21.28684 * 21 20 19 23 23 H 1.08998 * 109.46953 * 305.71902 * 1 2 3 24 24 H 1.09001 * 109.47484 * 65.72631 * 1 2 3 25 25 H 1.09000 * 109.46914 * 185.72192 * 1 2 3 26 26 H 1.09000 * 109.46904 * 240.00213 * 2 1 3 27 27 H 1.08993 * 109.47005 * 119.99579 * 2 1 3 28 28 H 1.00901 * 111.00185 * 17.16780 * 5 3 2 29 29 H 1.09001 * 109.47142 * 63.02833 * 8 6 5 30 30 H 1.08995 * 109.47121 * 183.02284 * 8 6 5 31 31 H 1.08996 * 109.47350 * 303.02578 * 8 6 5 32 32 H 0.96996 * 119.99520 * 179.97438 * 12 11 9 33 33 H 1.09000 * 111.11943 * 273.27189 * 19 17 3 34 34 H 1.08996 * 111.12868 * 37.43458 * 19 17 3 35 35 H 1.08995 * 110.88154 * 207.74926 * 20 19 17 36 36 H 1.09009 * 110.93598 * 84.24895 * 20 19 17 37 37 H 1.08996 * 109.82836 * 261.77353 * 21 20 19 38 38 H 1.08998 * 109.83055 * 140.79769 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5840 1.9891 0.8254 5 7 1.6836 2.0879 -1.2706 6 6 1.2801 3.4841 -1.0570 7 1 1.8579 3.9077 -0.2355 8 6 -0.2099 3.5376 -0.7133 9 6 1.5349 4.2784 -2.3122 10 1 1.9542 3.7942 -3.1817 11 6 1.2327 5.6230 -2.3504 12 7 0.7216 6.2125 -1.2916 13 14 1.5478 6.6073 -3.9064 14 1 0.3415 6.5655 -4.7715 15 1 1.8513 8.0162 -3.5480 16 1 2.7012 6.0229 -4.6367 17 6 3.5611 1.4458 0.1645 18 1 4.0370 1.0105 -0.7141 19 6 4.0741 2.8897 0.3942 20 6 5.4032 2.6124 1.1505 21 6 5.0565 1.3537 1.9746 22 8 3.9362 0.7198 1.3459 23 1 -0.3633 0.6000 0.8343 24 1 -0.3634 0.4225 -0.9368 25 1 -0.3633 -1.0226 0.1025 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 0.9600 1.5715 -1.7481 29 1 -0.3859 3.0085 0.2233 30 1 -0.5213 4.5767 -0.6076 31 1 -0.7838 3.0656 -1.5107 32 1 0.5094 7.1586 -1.3184 33 1 4.2578 3.3966 -0.5531 34 1 3.3814 3.4588 1.0142 35 1 5.6592 3.4458 1.8045 36 1 6.2138 2.4071 0.4512 37 1 4.7959 1.6392 2.9937 38 1 5.9079 0.6732 1.9861 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389254022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:42 Heat of formation + Delta-G solvation = -62.073499 kcal Electronic energy + Delta-G solvation = -16908.166528 eV Core-core repulsion = 14363.905613 eV Total energy + Delta-G solvation = -2544.260916 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.25196 -36.61206 -33.60065 -31.79372 -31.14669 -29.58133 -27.37041 -25.12025 -24.52198 -21.89689 -20.95802 -20.27440 -19.69657 -16.39243 -16.21451 -15.59285 -14.93320 -14.71956 -14.10630 -13.84271 -13.28436 -12.94078 -12.72831 -12.19701 -12.12916 -12.07109 -11.56286 -11.31394 -11.03690 -10.93854 -10.92309 -10.77205 -10.59618 -10.41058 -10.29296 -10.03444 -9.99079 -9.68220 -9.18381 -8.85665 -8.33471 -7.21645 -5.97148 -4.00226 3.32393 3.39122 3.43308 4.13698 4.45739 4.92350 5.07699 5.18489 5.34219 5.39043 5.41947 5.52354 5.64897 5.73908 5.81869 5.93890 5.99078 6.05043 6.21051 6.27462 6.35616 6.36903 6.52827 6.63598 6.69708 6.72309 6.77689 6.89958 7.15916 7.37264 7.49618 7.77896 7.92582 8.31666 8.58840 8.65619 9.07680 9.65186 11.09456 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.008707 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.931443 B = 3215.156189 C = 3949.808991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.092 3.908 4 H 0.048 0.952 5 N -0.679 5.679 6 C 0.210 3.790 7 H 0.039 0.961 8 C -0.170 4.170 9 C -0.493 4.493 10 H 0.061 0.939 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.894 3.106 14 H -0.283 1.283 15 H -0.289 1.289 16 H -0.274 1.274 17 C 0.095 3.905 18 H 0.071 0.929 19 C -0.138 4.138 20 C -0.160 4.160 21 C 0.054 3.946 22 O -0.388 6.388 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.331 0.669 29 H 0.005 0.995 30 H 0.088 0.912 31 H 0.025 0.975 32 H 0.259 0.741 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 -8.393 4.617 10.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.019 4.019 4 H 0.066 0.934 5 N -0.311 5.311 6 C 0.102 3.898 7 H 0.057 0.943 8 C -0.229 4.229 9 C -0.531 4.531 10 H 0.080 0.920 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.723 3.277 14 H -0.209 1.209 15 H -0.215 1.215 16 H -0.199 1.199 17 C 0.038 3.962 18 H 0.089 0.911 19 C -0.175 4.175 20 C -0.198 4.198 21 C -0.023 4.023 22 O -0.307 6.307 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.149 0.851 29 H 0.025 0.975 30 H 0.107 0.893 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.061 -8.234 4.593 10.701 hybrid contribution -0.653 0.803 -0.435 1.123 sum 4.408 -7.431 4.159 9.588 Atomic orbital electron populations 1.21824 0.96312 1.00832 1.02029 1.21731 0.95286 0.97168 1.02244 1.21494 0.92844 0.93834 0.93717 0.93398 1.60587 1.46930 1.04897 1.18721 1.19310 0.90511 0.82833 0.97132 0.94332 1.22459 1.00809 1.03616 0.96033 1.21173 1.40182 0.93062 0.98726 0.92039 1.24938 0.95539 0.97800 0.96251 1.69884 1.44369 1.10959 1.28503 0.86558 0.78512 0.79158 0.83501 1.20907 1.21464 1.19929 1.22974 0.95785 0.90559 0.86919 0.91134 1.23237 0.95046 0.97394 1.01872 1.23176 0.99191 0.97913 0.99476 1.23014 0.89151 0.93671 0.96460 1.88325 1.49016 1.52132 1.41264 0.92966 0.92527 0.93240 0.91870 0.91312 0.85058 0.97548 0.89293 0.95586 0.93147 0.88743 0.90642 0.90647 0.91038 0.92078 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.71 37.16 0.36 -1.88 16 2 C -0.13 -1.99 5.30 -26.73 -0.14 -2.13 16 3 C 0.09 1.69 1.82 -67.71 -0.12 1.57 16 4 H 0.05 0.97 7.10 -51.93 -0.37 0.60 16 5 N -0.68 -14.03 6.00 -100.95 -0.61 -14.63 16 6 C 0.21 5.09 2.11 -68.86 -0.15 4.95 16 7 H 0.04 1.02 5.78 -51.93 -0.30 0.72 16 8 C -0.17 -4.04 8.97 37.16 0.33 -3.71 16 9 C -0.49 -13.29 8.84 -34.44 -0.30 -13.59 16 10 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 11 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 12 N -0.90 -25.31 11.30 55.43 0.63 -24.68 16 13 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 17 C 0.10 1.68 3.19 -25.70 -0.08 1.59 16 18 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 19 C -0.14 -2.43 5.31 -24.42 -0.13 -2.56 16 20 C -0.16 -2.23 7.02 -24.72 -0.17 -2.40 16 21 C 0.05 0.74 7.80 37.88 0.30 1.04 16 22 O -0.39 -6.51 10.11 -35.23 -0.36 -6.87 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 0.86 6.82 -51.93 -0.35 0.51 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.07 7.39 -51.93 -0.38 0.69 16 28 H 0.33 6.59 6.38 -39.29 -0.25 6.34 16 29 H 0.01 0.12 7.79 -51.93 -0.40 -0.28 16 30 H 0.09 2.36 6.00 -51.93 -0.31 2.05 16 31 H 0.03 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 34 H 0.07 1.45 7.05 -51.93 -0.37 1.08 16 35 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 295.42 15.07 4.45 4.45 Total: -1.00 -27.56 295.42 -7.62 -35.18 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.51 Total: 6.00 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -0.21 Total: -15.72 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.02 Total: -39.32 kcal Atomic # 8 Polarization: -6.51 SS G_CDS: -0.36 Total: -6.87 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.56 -7.62 -35.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389254022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.894 kcal (2) G-P(sol) polarization free energy of solvation -27.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds