Wall clock time and date at job start Mon Mar 30 2020 03:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46590 * 2 1 4 4 H 1.08994 * 109.47800 * 53.44614 * 3 2 1 5 5 N 1.46899 * 109.47189 * 293.44488 * 3 2 1 6 6 C 1.46903 * 111.00111 * 141.11649 * 5 3 2 7 7 H 1.08999 * 109.46955 * 34.05427 * 6 5 3 8 8 C 1.52998 * 109.47122 * 274.05167 * 6 5 3 9 9 C 1.50704 * 109.47312 * 154.05082 * 6 5 3 10 10 H 1.07998 * 119.99593 * 0.02562 * 9 6 5 11 11 C 1.37870 * 120.00159 * 180.02562 * 9 6 5 12 12 N 1.31522 * 119.99773 * 359.97438 * 11 9 6 13 13 Si 1.86798 * 120.00136 * 180.02562 * 11 9 6 14 14 H 1.48503 * 109.47163 * 90.00276 * 13 11 9 15 15 H 1.48505 * 109.47197 * 209.99815 * 13 11 9 16 16 H 1.48498 * 109.47078 * 329.99963 * 13 11 9 17 17 C 1.53002 * 109.47024 * 173.45082 * 3 2 1 18 18 H 1.09000 * 110.27825 * 66.92793 * 17 3 2 19 19 C 1.54946 * 110.30958 * 189.02253 * 17 3 2 20 20 C 1.55415 * 100.89311 * 155.28535 * 19 17 3 21 21 C 1.54387 * 102.31032 * 325.98839 * 20 19 17 22 22 O 1.43244 * 107.58474 * 21.28684 * 21 20 19 23 23 H 1.08998 * 109.46953 * 305.71902 * 1 2 3 24 24 H 1.09001 * 109.47484 * 65.72631 * 1 2 3 25 25 H 1.09000 * 109.46914 * 185.72192 * 1 2 3 26 26 H 1.09000 * 109.46904 * 240.00213 * 2 1 3 27 27 H 1.08993 * 109.47005 * 119.99579 * 2 1 3 28 28 H 1.00901 * 111.00185 * 17.16780 * 5 3 2 29 29 H 1.09001 * 109.47142 * 63.02833 * 8 6 5 30 30 H 1.08995 * 109.47121 * 183.02284 * 8 6 5 31 31 H 1.08996 * 109.47350 * 303.02578 * 8 6 5 32 32 H 0.96996 * 119.99520 * 179.97438 * 12 11 9 33 33 H 1.09000 * 111.11943 * 273.27189 * 19 17 3 34 34 H 1.08996 * 111.12868 * 37.43458 * 19 17 3 35 35 H 1.08995 * 110.88154 * 207.74926 * 20 19 17 36 36 H 1.09009 * 110.93598 * 84.24895 * 20 19 17 37 37 H 1.08996 * 109.82836 * 261.77353 * 21 20 19 38 38 H 1.08998 * 109.83055 * 140.79769 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5840 1.9891 0.8254 5 7 1.6836 2.0879 -1.2706 6 6 1.2801 3.4841 -1.0570 7 1 1.8579 3.9077 -0.2355 8 6 -0.2099 3.5376 -0.7133 9 6 1.5349 4.2784 -2.3122 10 1 1.9542 3.7942 -3.1817 11 6 1.2327 5.6230 -2.3504 12 7 0.7216 6.2125 -1.2916 13 14 1.5478 6.6073 -3.9064 14 1 0.3415 6.5655 -4.7715 15 1 1.8513 8.0162 -3.5480 16 1 2.7012 6.0229 -4.6367 17 6 3.5611 1.4458 0.1645 18 1 4.0370 1.0105 -0.7141 19 6 4.0741 2.8897 0.3942 20 6 5.4032 2.6124 1.1505 21 6 5.0565 1.3537 1.9746 22 8 3.9362 0.7198 1.3459 23 1 -0.3633 0.6000 0.8343 24 1 -0.3634 0.4225 -0.9368 25 1 -0.3633 -1.0226 0.1025 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 0.9600 1.5715 -1.7481 29 1 -0.3859 3.0085 0.2233 30 1 -0.5213 4.5767 -0.6076 31 1 -0.7838 3.0656 -1.5107 32 1 0.5094 7.1586 -1.3184 33 1 4.2578 3.3966 -0.5531 34 1 3.3814 3.4588 1.0142 35 1 5.6592 3.4458 1.8045 36 1 6.2138 2.4071 0.4512 37 1 4.7959 1.6392 2.9937 38 1 5.9079 0.6732 1.9861 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389254022.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:42 Heat of formation + Delta-G solvation = -79.215684 kcal Electronic energy + Delta-G solvation = -16908.909869 eV Core-core repulsion = 14363.905613 eV Total energy + Delta-G solvation = -2545.004257 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60190 -38.19552 -35.40811 -33.27067 -32.76132 -30.94609 -29.03353 -27.18979 -25.94829 -23.10649 -22.40525 -22.06408 -21.15665 -18.25044 -17.74583 -16.87555 -16.77482 -16.12810 -15.68876 -15.37953 -14.62965 -14.56622 -14.14314 -13.93772 -13.63052 -13.47262 -13.20446 -12.86027 -12.81980 -12.60868 -12.49703 -12.23027 -12.18178 -12.03467 -11.79959 -11.68151 -11.62140 -11.18497 -10.91962 -10.43418 -10.37834 -8.94405 -8.06179 -6.16243 1.43148 1.44426 1.54638 2.45286 2.83416 3.22350 3.64724 3.70323 3.96223 4.06107 4.18714 4.23284 4.34638 4.40803 4.51663 4.62772 4.77638 4.82845 4.87579 4.89389 4.98775 5.02175 5.07283 5.11151 5.17280 5.19452 5.23860 5.32931 5.45823 5.51770 5.73163 5.89053 6.16506 6.33440 6.70710 6.88230 7.00152 7.53501 8.98959 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.025085 B = 0.008707 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.931443 B = 3215.156189 C = 3949.808991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.093 3.907 4 H 0.025 0.975 5 N -0.677 5.677 6 C 0.218 3.782 7 H 0.013 0.987 8 C -0.157 4.157 9 C -0.508 4.508 10 H 0.054 0.946 11 C 0.010 3.990 12 N -0.922 5.922 13 Si 0.955 3.045 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.270 1.270 17 C 0.101 3.899 18 H 0.070 0.930 19 C -0.141 4.141 20 C -0.150 4.150 21 C 0.048 3.952 22 O -0.398 6.398 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.336 0.664 29 H 0.020 0.980 30 H 0.060 0.940 31 H 0.031 0.969 32 H 0.259 0.741 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.322 -9.512 4.494 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.018 4.018 4 H 0.044 0.956 5 N -0.309 5.309 6 C 0.110 3.890 7 H 0.031 0.969 8 C -0.217 4.217 9 C -0.546 4.546 10 H 0.072 0.928 11 C -0.188 4.188 12 N -0.563 5.563 13 Si 0.781 3.219 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.195 1.195 17 C 0.043 3.957 18 H 0.088 0.912 19 C -0.179 4.179 20 C -0.187 4.187 21 C -0.028 4.028 22 O -0.318 6.318 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.155 0.845 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.828 -9.371 4.475 11.908 hybrid contribution -0.867 1.125 -0.344 1.462 sum 4.961 -8.245 4.131 10.472 Atomic orbital electron populations 1.21796 0.95428 1.02249 1.01195 1.21666 0.95999 0.95056 1.02872 1.21506 0.93607 0.95076 0.91590 0.95649 1.60469 1.46803 1.03492 1.20164 1.19035 0.90297 0.84471 0.95225 0.96867 1.22280 1.00504 1.01968 0.96928 1.21443 1.40133 0.93739 0.99332 0.92797 1.25653 0.95387 0.98791 0.98988 1.70012 1.45023 1.11112 1.30132 0.85603 0.78480 0.77659 0.80125 1.20360 1.21234 1.19514 1.22801 0.95042 0.90406 0.87452 0.91238 1.23113 0.96947 0.97074 1.00720 1.23158 0.97325 0.98680 0.99579 1.23254 0.89087 0.93909 0.96549 1.88297 1.50291 1.52295 1.40888 0.93925 0.93244 0.90659 0.91042 0.90719 0.84488 0.96128 0.92072 0.95038 0.93193 0.91224 0.93083 0.89197 0.89571 0.90972 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.71 71.98 0.70 -3.44 16 2 C -0.12 -3.54 5.30 30.60 0.16 -3.38 16 3 C 0.09 3.40 1.82 44.92 0.08 3.48 16 4 H 0.03 1.05 7.10 -2.39 -0.02 1.03 16 5 N -0.68 -28.09 6.00 -473.31 -2.84 -30.93 16 6 C 0.22 10.82 2.11 44.17 0.09 10.91 16 7 H 0.01 0.73 5.78 -2.39 -0.01 0.72 16 8 C -0.16 -7.59 8.97 71.98 0.65 -6.95 16 9 C -0.51 -27.75 8.84 25.60 0.23 -27.52 16 10 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 11 C 0.01 0.53 5.30 84.65 0.45 0.98 16 12 N -0.92 -52.89 11.30 21.45 0.24 -52.64 16 13 Si 0.95 43.84 29.54 68.60 2.03 45.86 16 14 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 15 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 16 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 17 C 0.10 3.50 3.19 31.26 0.10 3.60 16 18 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 19 C -0.14 -5.03 5.31 32.09 0.17 -4.86 16 20 C -0.15 -3.93 7.02 31.90 0.22 -3.71 16 21 C 0.05 1.21 7.80 72.45 0.56 1.78 16 22 O -0.40 -12.71 10.11 -148.98 -1.51 -14.22 16 23 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 1.43 6.82 -2.39 -0.02 1.41 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 27 H 0.07 2.18 7.39 -2.39 -0.02 2.16 16 28 H 0.34 13.23 6.38 -89.69 -0.57 12.66 16 29 H 0.02 0.89 7.79 -2.39 -0.02 0.87 16 30 H 0.06 3.31 6.00 -2.39 -0.01 3.30 16 31 H 0.03 1.43 8.08 -2.39 -0.02 1.41 16 32 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 33 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.05 2.04 7.05 -2.39 -0.02 2.02 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -58.75 295.42 1.78 -56.96 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.45 Total: 24.07 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 3.42 Total: -29.10 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -2.60 Total: -83.58 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.51 Total: -14.22 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -58.75 1.78 -56.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389254022.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.254 kcal (2) G-P(sol) polarization free energy of solvation -58.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds