Wall clock time and date at job start Mon Mar 30 2020 03:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 H 1.09000 * 109.47483 * 53.90083 * 3 2 1 5 5 N 1.46899 * 109.47372 * 293.89862 * 3 2 1 6 6 C 1.46894 * 111.00416 * 143.19155 * 5 3 2 7 7 H 1.09003 * 109.47119 * 36.76678 * 6 5 3 8 8 C 1.52997 * 109.47191 * 276.77356 * 6 5 3 9 9 C 1.50694 * 109.47656 * 156.76946 * 6 5 3 10 10 H 1.08005 * 119.99570 * 4.90104 * 9 6 5 11 11 C 1.37879 * 120.00458 * 184.90654 * 9 6 5 12 12 N 1.31518 * 120.00031 * 192.83249 * 11 9 6 13 13 Si 1.86797 * 119.99680 * 12.82884 * 11 9 6 14 14 H 1.48494 * 109.47429 * 95.28298 * 13 11 9 15 15 H 1.48506 * 109.46845 * 215.27898 * 13 11 9 16 16 H 1.48504 * 109.47537 * 335.27862 * 13 11 9 17 17 C 1.53006 * 109.47001 * 173.90309 * 3 2 1 18 18 H 1.09004 * 110.27386 * 298.50893 * 17 3 2 19 19 C 1.55500 * 110.36784 * 176.40370 * 17 3 2 20 20 C 1.55305 * 100.69565 * 204.60717 * 19 17 3 21 21 C 1.54387 * 102.43453 * 34.12849 * 20 19 17 22 22 O 1.43231 * 107.58911 * 338.53743 * 21 20 19 23 23 H 1.08998 * 109.47422 * 56.26282 * 1 2 3 24 24 H 1.08997 * 109.47432 * 176.26276 * 1 2 3 25 25 H 1.09004 * 109.47529 * 296.26557 * 1 2 3 26 26 H 1.09000 * 109.47311 * 240.00046 * 2 1 3 27 27 H 1.09001 * 109.47199 * 120.00211 * 2 1 3 28 28 H 1.00899 * 110.99566 * 19.24120 * 5 3 2 29 29 H 1.09000 * 109.47531 * 64.30545 * 8 6 5 30 30 H 1.08999 * 109.47364 * 184.30702 * 8 6 5 31 31 H 1.09000 * 109.47291 * 304.30430 * 8 6 5 32 32 H 0.96999 * 119.99661 * 179.97438 * 12 11 9 33 33 H 1.08996 * 111.33447 * 86.73296 * 19 17 3 34 34 H 1.09005 * 111.14441 * 322.39941 * 19 17 3 35 35 H 1.08995 * 110.84905 * 275.83323 * 20 19 17 36 36 H 1.08995 * 110.84629 * 152.41633 * 20 19 17 37 37 H 1.08993 * 109.82982 * 98.05735 * 21 20 19 38 38 H 1.09002 * 109.82500 * 219.03001 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5902 1.9869 0.8303 5 7 1.6742 2.0912 -1.2662 6 6 1.3197 3.5007 -1.0526 7 1 1.9626 3.9240 -0.2808 8 6 -0.1413 3.5975 -0.6088 9 6 1.5062 4.2660 -2.3372 10 1 1.7768 3.7432 -3.2428 11 6 1.3315 5.6335 -2.3567 12 7 1.2433 6.2689 -3.5048 13 14 1.2202 6.5837 -0.7523 14 1 2.5591 7.1217 -0.4016 15 1 0.2607 7.7065 -0.9075 16 1 0.7521 5.6784 0.3279 17 6 3.5623 1.4452 0.1532 18 1 3.8472 0.9900 1.1018 19 6 4.1125 2.8969 0.0650 20 6 5.5682 2.6255 -0.4031 21 6 5.4006 1.3865 -1.3089 22 8 4.1748 0.7437 -0.9404 23 1 -0.3634 0.5707 -0.8546 24 1 -0.3634 -1.0254 -0.0670 25 1 -0.3634 0.4548 0.9216 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.9238 1.5950 -1.7231 29 1 -0.2604 3.1093 0.3585 30 1 -0.4266 4.6460 -0.5241 31 1 -0.7779 3.1060 -1.3445 32 1 1.1201 7.2310 -3.5184 33 1 4.0978 3.3864 1.0387 34 1 3.5645 3.4809 -0.6746 35 1 6.2133 2.4007 0.4462 36 1 5.9573 3.4709 -0.9705 37 1 5.3570 1.6951 -2.3533 38 1 6.2362 0.7029 -1.1586 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389254023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:44 Heat of formation + Delta-G solvation = -48.307328 kcal Electronic energy + Delta-G solvation = -17198.333458 eV Core-core repulsion = 14654.669488 eV Total energy + Delta-G solvation = -2543.663970 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.22975 -36.62457 -33.66096 -31.74389 -31.37242 -29.70732 -27.79752 -25.19414 -24.70171 -21.91222 -21.00728 -20.17685 -19.52865 -16.72491 -16.42027 -15.41289 -15.01348 -14.59784 -14.32253 -13.92321 -13.09809 -12.99069 -12.71283 -12.50424 -12.28684 -12.10443 -12.07825 -11.63217 -11.28863 -11.07476 -10.98672 -10.85692 -10.51291 -10.42170 -10.28215 -9.93272 -9.89068 -9.45859 -9.21106 -8.89789 -8.37538 -7.27069 -6.04560 -3.97687 3.26205 3.35507 3.37860 4.31915 4.43070 4.93355 5.09292 5.14397 5.25571 5.30370 5.41753 5.47201 5.50611 5.72892 5.77820 5.93123 6.04297 6.11893 6.14068 6.17267 6.21039 6.28696 6.31187 6.37732 6.42530 6.54511 6.59343 6.68891 6.84671 7.03416 7.23006 7.58803 7.76554 8.04393 8.46888 8.74612 9.11480 9.61392 11.09075 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.011071 C = 0.008696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.857302 B = 2528.537794 C = 3219.191924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C 0.084 3.916 4 H 0.050 0.950 5 N -0.658 5.658 6 C 0.179 3.821 7 H 0.035 0.965 8 C -0.177 4.177 9 C -0.498 4.498 10 H 0.080 0.920 11 C 0.071 3.929 12 N -0.897 5.897 13 Si 0.858 3.142 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.255 1.255 17 C 0.098 3.902 18 H 0.053 0.947 19 C -0.164 4.164 20 C -0.153 4.153 21 C 0.059 3.941 22 O -0.364 6.364 23 H 0.059 0.941 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.058 0.942 28 H 0.334 0.666 29 H 0.020 0.980 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.121 0.879 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.498 -9.044 9.080 13.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C -0.027 4.027 4 H 0.068 0.932 5 N -0.289 5.289 6 C 0.070 3.930 7 H 0.053 0.947 8 C -0.237 4.237 9 C -0.536 4.536 10 H 0.098 0.902 11 C -0.130 4.130 12 N -0.535 5.535 13 Si 0.685 3.315 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.179 1.179 17 C 0.039 3.961 18 H 0.071 0.929 19 C -0.201 4.201 20 C -0.191 4.191 21 C -0.018 4.018 22 O -0.283 6.283 23 H 0.078 0.922 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.039 -8.910 8.710 13.098 hybrid contribution -0.806 0.923 1.392 1.855 sum 3.233 -7.987 10.102 13.278 Atomic orbital electron populations 1.21853 0.96328 1.01211 1.01873 1.21680 0.95166 0.96909 1.02488 1.21645 0.93334 0.94059 0.93625 0.93168 1.60575 1.45509 1.03191 1.19643 1.19784 0.89883 0.85916 0.97399 0.94726 1.22913 1.01825 1.01056 0.97879 1.20935 1.46231 0.91410 0.95002 0.90228 1.24891 0.94933 0.97704 0.95481 1.69952 1.49894 1.08881 1.24776 0.87315 0.78016 0.80141 0.86001 1.20799 1.21448 1.17940 1.23042 0.93277 0.91097 0.88665 0.92880 1.23695 0.95377 0.98032 1.02971 1.23038 0.97882 0.98786 0.99405 1.22948 0.86857 0.92898 0.99103 1.88364 1.35964 1.51821 1.52166 0.92207 0.93015 0.93259 0.90593 0.92372 0.84682 0.96127 0.93042 0.93463 0.92856 0.91681 0.86131 0.91937 0.90430 0.91422 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.81 37.15 0.36 -1.70 16 2 C -0.12 -1.81 5.20 -26.73 -0.14 -1.94 16 3 C 0.08 1.43 1.97 -67.71 -0.13 1.30 16 4 H 0.05 0.87 7.04 -51.93 -0.37 0.50 16 5 N -0.66 -13.23 5.60 -100.96 -0.57 -13.79 16 6 C 0.18 4.06 0.82 -68.87 -0.06 4.00 16 7 H 0.04 0.80 4.42 -51.93 -0.23 0.57 16 8 C -0.18 -3.77 8.39 37.16 0.31 -3.46 16 9 C -0.50 -13.66 9.18 -34.44 -0.32 -13.98 16 10 H 0.08 2.45 8.06 -52.48 -0.42 2.02 16 11 C 0.07 2.01 5.37 -17.82 -0.10 1.92 16 12 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 13 Si 0.86 20.84 25.74 -169.99 -4.38 16.46 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 16 H -0.26 -5.79 5.35 56.52 0.30 -5.49 16 17 C 0.10 1.63 3.27 -25.40 -0.08 1.54 16 18 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.16 -2.83 5.82 -24.18 -0.14 -2.97 16 20 C -0.15 -2.29 7.00 -24.78 -0.17 -2.47 16 21 C 0.06 0.92 7.80 37.88 0.30 1.22 16 22 O -0.36 -6.50 10.44 -35.23 -0.37 -6.87 16 23 H 0.06 0.86 6.54 -51.93 -0.34 0.52 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.33 6.56 6.26 -39.29 -0.25 6.31 16 29 H 0.02 0.38 7.55 -51.93 -0.39 -0.01 16 30 H 0.05 1.15 4.77 -51.93 -0.25 0.90 16 31 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 32 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.12 2.55 4.89 -51.93 -0.25 2.29 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 287.01 15.07 4.33 4.33 Total: -1.00 -29.30 287.01 -6.74 -36.04 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -6.37 Total: 6.75 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -0.17 Total: -16.53 kcal Atomic # 7 Polarization: -40.39 SS G_CDS: 0.21 Total: -40.18 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.37 Total: -6.87 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.38 Total: 16.46 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -29.30 -6.74 -36.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389254023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.266 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds