Wall clock time and date at job start Mon Mar 30 2020 03:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47019 * 2 1 4 4 H 1.09000 * 109.47483 * 53.90083 * 3 2 1 5 5 N 1.46899 * 109.47372 * 293.89862 * 3 2 1 6 6 C 1.46894 * 111.00416 * 143.19155 * 5 3 2 7 7 H 1.09003 * 109.47119 * 36.76678 * 6 5 3 8 8 C 1.52997 * 109.47191 * 276.77356 * 6 5 3 9 9 C 1.50694 * 109.47656 * 156.76946 * 6 5 3 10 10 H 1.08005 * 119.99570 * 4.90104 * 9 6 5 11 11 C 1.37879 * 120.00458 * 184.90654 * 9 6 5 12 12 N 1.31518 * 120.00031 * 192.83249 * 11 9 6 13 13 Si 1.86797 * 119.99680 * 12.82884 * 11 9 6 14 14 H 1.48494 * 109.47429 * 95.28298 * 13 11 9 15 15 H 1.48506 * 109.46845 * 215.27898 * 13 11 9 16 16 H 1.48504 * 109.47537 * 335.27862 * 13 11 9 17 17 C 1.53006 * 109.47001 * 173.90309 * 3 2 1 18 18 H 1.09004 * 110.27386 * 298.50893 * 17 3 2 19 19 C 1.55500 * 110.36784 * 176.40370 * 17 3 2 20 20 C 1.55305 * 100.69565 * 204.60717 * 19 17 3 21 21 C 1.54387 * 102.43453 * 34.12849 * 20 19 17 22 22 O 1.43231 * 107.58911 * 338.53743 * 21 20 19 23 23 H 1.08998 * 109.47422 * 56.26282 * 1 2 3 24 24 H 1.08997 * 109.47432 * 176.26276 * 1 2 3 25 25 H 1.09004 * 109.47529 * 296.26557 * 1 2 3 26 26 H 1.09000 * 109.47311 * 240.00046 * 2 1 3 27 27 H 1.09001 * 109.47199 * 120.00211 * 2 1 3 28 28 H 1.00899 * 110.99566 * 19.24120 * 5 3 2 29 29 H 1.09000 * 109.47531 * 64.30545 * 8 6 5 30 30 H 1.08999 * 109.47364 * 184.30702 * 8 6 5 31 31 H 1.09000 * 109.47291 * 304.30430 * 8 6 5 32 32 H 0.96999 * 119.99661 * 179.97438 * 12 11 9 33 33 H 1.08996 * 111.33447 * 86.73296 * 19 17 3 34 34 H 1.09005 * 111.14441 * 322.39941 * 19 17 3 35 35 H 1.08995 * 110.84905 * 275.83323 * 20 19 17 36 36 H 1.08995 * 110.84629 * 152.41633 * 20 19 17 37 37 H 1.08993 * 109.82982 * 98.05735 * 21 20 19 38 38 H 1.09002 * 109.82500 * 219.03001 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5902 1.9869 0.8303 5 7 1.6742 2.0912 -1.2662 6 6 1.3197 3.5007 -1.0526 7 1 1.9626 3.9240 -0.2808 8 6 -0.1413 3.5975 -0.6088 9 6 1.5062 4.2660 -2.3372 10 1 1.7768 3.7432 -3.2428 11 6 1.3315 5.6335 -2.3567 12 7 1.2433 6.2689 -3.5048 13 14 1.2202 6.5837 -0.7523 14 1 2.5591 7.1217 -0.4016 15 1 0.2607 7.7065 -0.9075 16 1 0.7521 5.6784 0.3279 17 6 3.5623 1.4452 0.1532 18 1 3.8472 0.9900 1.1018 19 6 4.1125 2.8969 0.0650 20 6 5.5682 2.6255 -0.4031 21 6 5.4006 1.3865 -1.3089 22 8 4.1748 0.7437 -0.9404 23 1 -0.3634 0.5707 -0.8546 24 1 -0.3634 -1.0254 -0.0670 25 1 -0.3634 0.4548 0.9216 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.9238 1.5950 -1.7231 29 1 -0.2604 3.1093 0.3585 30 1 -0.4266 4.6460 -0.5241 31 1 -0.7779 3.1060 -1.3445 32 1 1.1201 7.2310 -3.5184 33 1 4.0978 3.3864 1.0387 34 1 3.5645 3.4809 -0.6746 35 1 6.2133 2.4007 0.4462 36 1 5.9573 3.4709 -0.9705 37 1 5.3570 1.6951 -2.3533 38 1 6.2362 0.7029 -1.1586 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389254023.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:44 Heat of formation + Delta-G solvation = -68.829345 kcal Electronic energy + Delta-G solvation = -17199.223359 eV Core-core repulsion = 14654.669488 eV Total energy + Delta-G solvation = -2544.553871 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.55745 -38.11352 -35.35517 -33.52529 -32.77358 -30.99332 -29.35123 -27.11199 -26.10002 -23.11874 -22.39869 -21.84144 -20.90296 -18.68217 -17.82628 -16.81260 -16.68521 -16.03207 -15.79360 -15.31274 -14.71263 -14.56198 -14.25109 -14.07233 -13.72328 -13.55929 -13.41728 -13.13657 -12.83013 -12.56192 -12.48393 -12.15126 -12.05274 -11.86901 -11.68299 -11.49826 -11.38095 -11.16488 -11.08261 -10.51344 -10.21563 -8.84206 -8.23761 -6.21145 1.33616 1.37444 1.45855 2.37512 3.06049 3.11152 3.54577 3.77609 3.92091 4.13016 4.22568 4.28923 4.35183 4.46153 4.55316 4.59182 4.68381 4.73457 4.81102 4.87190 4.94727 4.95918 5.01519 5.04706 5.11238 5.15804 5.20666 5.35394 5.46608 5.54460 5.58922 5.74607 6.13110 6.35553 6.81725 6.85082 6.89208 7.42637 8.94051 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.011071 C = 0.008696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.857302 B = 2528.537794 C = 3219.191924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.081 3.919 4 H 0.056 0.944 5 N -0.671 5.671 6 C 0.188 3.812 7 H 0.040 0.960 8 C -0.173 4.173 9 C -0.497 4.497 10 H 0.027 0.973 11 C 0.013 3.987 12 N -0.950 5.950 13 Si 0.924 3.076 14 H -0.278 1.278 15 H -0.290 1.290 16 H -0.225 1.225 17 C 0.095 3.905 18 H 0.083 0.917 19 C -0.171 4.171 20 C -0.147 4.147 21 C 0.054 3.946 22 O -0.385 6.385 23 H 0.042 0.958 24 H 0.069 0.931 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.333 0.667 29 H 0.052 0.948 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.262 0.738 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.713 -10.090 12.323 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.029 4.029 4 H 0.074 0.926 5 N -0.302 5.302 6 C 0.079 3.921 7 H 0.058 0.942 8 C -0.232 4.232 9 C -0.535 4.535 10 H 0.046 0.954 11 C -0.184 4.184 12 N -0.591 5.591 13 Si 0.749 3.251 14 H -0.204 1.204 15 H -0.216 1.216 16 H -0.147 1.147 17 C 0.037 3.963 18 H 0.100 0.900 19 C -0.208 4.208 20 C -0.185 4.185 21 C -0.023 4.023 22 O -0.304 6.304 23 H 0.061 0.939 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.152 0.848 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.257 -9.988 11.969 16.159 hybrid contribution -0.827 1.157 0.282 1.450 sum 3.430 -8.831 12.251 15.486 Atomic orbital electron populations 1.21825 0.95385 1.02244 1.01508 1.21611 0.95931 0.95103 1.02813 1.21780 0.93940 0.95286 0.91875 0.92574 1.60427 1.45529 1.02210 1.22040 1.19543 0.90990 0.86905 0.94674 0.94237 1.22791 1.00263 1.00666 0.99486 1.21176 1.45066 0.91845 0.95436 0.95418 1.25737 0.94761 0.98781 0.99111 1.70115 1.52151 1.09202 1.27606 0.86239 0.78042 0.78719 0.82130 1.20446 1.21638 1.14726 1.23189 0.92883 0.90726 0.89472 0.89965 1.23637 0.96370 0.98154 1.02639 1.23035 0.97072 0.98162 1.00182 1.23058 0.87088 0.93986 0.98173 1.88334 1.36908 1.52292 1.52911 0.93859 0.91194 0.92406 0.92091 0.90120 0.84772 0.92943 0.94123 0.93720 0.92897 0.89834 0.90427 0.88800 0.90967 0.93609 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.81 71.98 0.71 -2.92 16 2 C -0.12 -3.07 5.20 30.59 0.16 -2.91 16 3 C 0.08 2.58 1.97 44.92 0.09 2.67 16 4 H 0.06 1.73 7.04 -2.39 -0.02 1.72 16 5 N -0.67 -26.76 5.60 -473.33 -2.65 -29.41 16 6 C 0.19 8.44 0.82 44.17 0.04 8.47 16 7 H 0.04 1.77 4.42 -2.39 -0.01 1.75 16 8 C -0.17 -7.01 8.39 71.98 0.60 -6.40 16 9 C -0.50 -28.20 9.18 25.60 0.24 -27.97 16 10 H 0.03 1.81 8.06 -2.91 -0.02 1.78 16 11 C 0.01 0.73 5.37 84.65 0.45 1.19 16 12 N -0.95 -59.76 13.96 21.45 0.30 -59.46 16 13 Si 0.92 43.02 25.74 68.60 1.77 44.79 16 14 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 15 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 16 H -0.22 -9.27 5.35 99.48 0.53 -8.73 16 17 C 0.10 2.93 3.27 31.46 0.10 3.04 16 18 H 0.08 2.09 8.14 -2.38 -0.02 2.08 16 19 C -0.17 -5.58 5.82 32.25 0.19 -5.39 16 20 C -0.15 -4.09 7.00 31.86 0.22 -3.87 16 21 C 0.05 1.61 7.80 72.45 0.56 2.17 16 22 O -0.38 -13.18 10.44 -148.98 -1.56 -14.74 16 23 H 0.04 1.17 6.54 -2.39 -0.02 1.15 16 24 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 26 H 0.06 1.80 7.92 -2.39 -0.02 1.78 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.33 13.14 6.26 -89.69 -0.56 12.58 16 29 H 0.05 1.78 7.55 -2.39 -0.02 1.76 16 30 H 0.04 1.72 4.77 -2.39 -0.01 1.70 16 31 H 0.04 1.80 8.06 -2.39 -0.02 1.78 16 32 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.08 3.25 4.89 -2.38 -0.01 3.24 16 35 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -65.49 287.01 1.52 -63.97 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.29 Total: 26.77 kcal Atomic # 6 Polarization: -35.28 SS G_CDS: 3.36 Total: -31.92 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -2.35 Total: -88.87 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.56 Total: -14.74 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.77 Total: 44.79 kcal Total: -65.49 1.52 -63.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389254023.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.857 kcal (2) G-P(sol) polarization free energy of solvation -65.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds