Wall clock time and date at job start Mon Mar 30 2020 03:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47143 * 2 1 4 4 H 1.09002 * 109.46708 * 297.93248 * 3 2 1 5 5 C 1.50696 * 109.47097 * 177.93378 * 3 2 1 6 6 H 1.08001 * 120.00008 * 239.99927 * 5 3 2 7 7 C 1.37876 * 119.99598 * 60.00037 * 5 3 2 8 8 N 1.31509 * 120.00582 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99710 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46842 * 59.99832 * 9 7 5 11 11 H 1.48495 * 109.47290 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47171 * 300.00129 * 9 7 5 13 13 N 1.46905 * 109.46878 * 57.93279 * 3 2 1 14 14 C 1.46901 * 110.99637 * 203.27277 * 13 3 2 15 15 C 1.52997 * 109.46817 * 183.27087 * 14 13 3 16 16 C 1.52995 * 109.46966 * 182.35100 * 15 14 13 17 17 C 1.53004 * 115.55226 * 293.92624 * 16 15 14 18 18 O 1.42895 * 109.47136 * 294.69243 * 17 16 15 19 19 C 1.53002 * 117.50031 * 148.26214 * 16 15 14 20 20 C 1.53000 * 117.50261 * 79.59865 * 16 15 14 21 21 H 1.09000 * 109.47483 * 292.20269 * 1 2 3 22 22 H 1.08996 * 109.47095 * 52.20659 * 1 2 3 23 23 H 1.09005 * 109.47106 * 172.20103 * 1 2 3 24 24 H 1.08997 * 109.47105 * 240.00154 * 2 1 3 25 25 H 1.08996 * 109.47033 * 120.00130 * 2 1 3 26 26 H 0.97002 * 120.00164 * 180.02562 * 8 7 5 27 27 H 1.00898 * 111.00106 * 327.22914 * 13 3 2 28 28 H 1.08998 * 109.47063 * 63.27495 * 14 13 3 29 29 H 1.08995 * 109.47205 * 303.27334 * 14 13 3 30 30 H 1.08997 * 109.47403 * 302.35373 * 15 14 13 31 31 H 1.08995 * 109.47228 * 62.35356 * 15 14 13 32 32 H 1.09007 * 109.46832 * 54.68947 * 17 16 15 33 33 H 1.08992 * 109.47273 * 174.68492 * 17 16 15 34 34 H 0.96703 * 113.99641 * 179.97438 * 18 17 16 35 35 H 1.09003 * 117.49883 * 359.97438 * 19 16 15 36 36 H 1.09005 * 117.50162 * 145.02222 * 19 16 15 37 37 H 1.08996 * 117.50182 * 214.98039 * 20 16 15 38 38 H 1.09001 * 117.49838 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7072 1.9455 -0.9080 5 6 3.5461 1.4428 0.0512 6 1 4.0583 1.9203 0.8734 7 6 4.2700 0.8335 -0.9516 8 7 3.6463 0.2517 -1.9526 9 14 6.1370 0.8345 -0.8885 10 1 6.5908 0.1496 0.3485 11 1 6.6728 0.1205 -2.0752 12 1 6.6316 2.2347 -0.8889 13 7 1.5099 2.1493 1.1737 14 6 1.4932 3.6012 0.9507 15 6 1.0131 4.3066 2.2207 16 6 0.9397 5.8141 1.9699 17 6 2.2805 6.5077 1.7205 18 8 3.0807 6.4365 2.9023 19 6 -0.1352 6.6035 2.7197 20 6 -0.2817 6.3465 1.2178 21 1 -0.3634 0.3883 0.9514 22 1 -0.3633 0.6297 -0.8121 23 1 -0.3633 -1.0182 -0.1395 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 4.1556 -0.1773 -2.6579 27 1 0.5910 1.8099 1.4157 28 1 0.8175 3.8346 0.1279 29 1 2.4984 3.9424 0.7034 30 1 0.0250 3.9347 2.4915 31 1 1.7116 4.1071 3.0333 32 1 2.7992 6.0116 0.9001 33 1 2.1067 7.5521 1.4618 34 1 3.9473 6.8569 2.8164 35 1 -0.7904 6.0487 3.3914 36 1 0.1126 7.6171 3.0350 37 1 -0.1301 7.1911 0.5457 38 1 -1.0332 5.6229 0.9020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395915792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:01 Heat of formation + Delta-G solvation = -40.324085 kcal Electronic energy + Delta-G solvation = -16228.851613 eV Core-core repulsion = 13685.533823 eV Total energy + Delta-G solvation = -2543.317790 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.70657 -36.28536 -35.59633 -32.71253 -31.40038 -28.68774 -26.73624 -25.87882 -23.04611 -22.47013 -21.45209 -19.51233 -18.59612 -17.16574 -16.27716 -15.57681 -15.17109 -14.66275 -14.54467 -13.74758 -13.54734 -12.98377 -12.85425 -12.63472 -12.21115 -11.70615 -11.62685 -11.44336 -11.21056 -10.89451 -10.78389 -10.60452 -10.53105 -10.16928 -9.95161 -9.85181 -9.76482 -9.55410 -9.25817 -8.98788 -8.31626 -7.12241 -5.92587 -3.95724 3.36251 3.40205 3.44110 3.71317 4.42831 4.48207 4.79782 4.89327 5.03911 5.31573 5.35925 5.46259 5.61143 5.67091 5.80495 5.90709 5.98761 6.09977 6.15892 6.17738 6.18845 6.22666 6.38741 6.44244 6.79453 6.83603 6.87827 7.13334 7.26186 7.58913 7.74806 7.82015 7.97221 8.38919 8.44384 8.85290 9.12219 9.68861 11.13440 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.007382 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.607300 B = 3792.013681 C = 4683.553839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.219 3.781 4 H -0.001 1.001 5 C -0.492 4.492 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.689 5.689 14 C 0.074 3.926 15 C -0.075 4.075 16 C -0.117 4.117 17 C 0.113 3.887 18 O -0.566 6.566 19 C -0.170 4.170 20 C -0.170 4.170 21 H 0.039 0.961 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.095 0.905 25 H 0.043 0.957 26 H 0.259 0.741 27 H 0.315 0.685 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.039 0.961 34 H 0.376 0.624 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.797 10.504 5.250 13.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C 0.112 3.888 4 H 0.016 0.984 5 C -0.531 4.531 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.205 1.205 13 N -0.321 5.321 14 C -0.056 4.056 15 C -0.113 4.113 16 C -0.117 4.117 17 C 0.035 3.965 18 O -0.371 6.371 19 C -0.207 4.207 20 C -0.207 4.207 21 H 0.057 0.943 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.113 0.887 25 H 0.062 0.938 26 H 0.069 0.931 27 H 0.132 0.868 28 H 0.029 0.971 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.222 0.778 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.672 10.080 5.615 12.857 hybrid contribution 0.720 0.373 -0.977 1.270 sum -4.952 10.454 4.638 12.462 Atomic orbital electron populations 1.21902 0.99779 0.99724 0.99550 1.21733 0.90964 1.00324 1.03042 1.19126 0.94547 0.89511 0.85660 0.98372 1.21184 0.90791 1.34294 1.06857 0.92134 1.24957 0.98409 0.95696 0.95483 1.69872 1.35093 1.37528 1.11337 0.86615 0.85812 0.78005 0.77254 1.20290 1.21485 1.20505 1.60658 1.27509 1.02334 1.41557 1.21734 1.00361 0.89573 0.93930 1.21063 1.01100 0.89510 0.99594 1.21397 0.89433 0.95927 1.04966 1.21615 0.90209 0.97257 0.87417 1.86496 1.31404 1.82173 1.37028 1.22981 1.02291 1.01017 0.94440 1.23012 0.99912 1.03108 0.94696 0.94250 0.94113 0.94351 0.88683 0.93838 0.93102 0.86757 0.97109 0.91026 0.92825 0.90397 0.92472 0.94285 0.77772 0.88883 0.89123 0.89015 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.98 9.42 37.16 0.35 -2.63 16 2 C -0.12 -2.95 5.38 -26.73 -0.14 -3.09 16 3 C 0.22 5.60 2.10 -68.86 -0.14 5.45 16 4 H 0.00 -0.04 7.87 -51.93 -0.41 -0.45 16 5 C -0.49 -13.90 8.47 -34.44 -0.29 -14.19 16 6 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 7 C 0.05 1.54 5.30 -17.82 -0.09 1.45 16 8 N -0.90 -25.93 11.34 55.43 0.63 -25.31 16 9 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 N -0.69 -15.19 6.27 -107.95 -0.68 -15.87 16 14 C 0.07 1.45 5.27 -3.83 -0.02 1.43 16 15 C -0.07 -1.23 5.33 -26.74 -0.14 -1.37 16 16 C -0.12 -1.64 1.76 -154.51 -0.27 -1.91 16 17 C 0.11 1.51 6.72 37.16 0.25 1.76 16 18 O -0.57 -7.85 13.56 -35.23 -0.48 -8.32 16 19 C -0.17 -2.04 9.94 -26.69 -0.27 -2.31 16 20 C -0.17 -2.05 9.94 -26.69 -0.27 -2.31 16 21 H 0.04 0.70 6.52 -51.93 -0.34 0.36 16 22 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.09 2.55 6.13 -51.93 -0.32 2.23 16 25 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.31 6.33 6.24 -39.29 -0.25 6.08 16 28 H 0.01 0.21 8.12 -51.93 -0.42 -0.21 16 29 H 0.07 1.55 6.85 -51.93 -0.36 1.20 16 30 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 31 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 32 H 0.06 0.82 7.06 -51.92 -0.37 0.45 16 33 H 0.04 0.44 8.09 -51.93 -0.42 0.02 16 34 H 0.38 3.46 9.12 45.56 0.42 3.88 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 306.97 15.07 4.63 4.63 Total: -1.00 -30.34 306.97 -7.77 -38.10 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -5.80 Total: 7.71 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -1.04 Total: -17.72 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: -0.05 Total: -41.17 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.48 Total: -8.32 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.34 -7.77 -38.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395915792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.221 kcal (2) G-P(sol) polarization free energy of solvation -30.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds