Wall clock time and date at job start Mon Mar 30 2020 03:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47143 * 2 1 4 4 H 1.09002 * 109.46708 * 297.93248 * 3 2 1 5 5 C 1.50696 * 109.47097 * 177.93378 * 3 2 1 6 6 H 1.08001 * 120.00008 * 239.99927 * 5 3 2 7 7 C 1.37876 * 119.99598 * 60.00037 * 5 3 2 8 8 N 1.31509 * 120.00582 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 119.99710 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46842 * 59.99832 * 9 7 5 11 11 H 1.48495 * 109.47290 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47171 * 300.00129 * 9 7 5 13 13 N 1.46905 * 109.46878 * 57.93279 * 3 2 1 14 14 C 1.46901 * 110.99637 * 203.27277 * 13 3 2 15 15 C 1.52997 * 109.46817 * 183.27087 * 14 13 3 16 16 C 1.52995 * 109.46966 * 182.35100 * 15 14 13 17 17 C 1.53004 * 115.55226 * 293.92624 * 16 15 14 18 18 O 1.42895 * 109.47136 * 294.69243 * 17 16 15 19 19 C 1.53002 * 117.50031 * 148.26214 * 16 15 14 20 20 C 1.53000 * 117.50261 * 79.59865 * 16 15 14 21 21 H 1.09000 * 109.47483 * 292.20269 * 1 2 3 22 22 H 1.08996 * 109.47095 * 52.20659 * 1 2 3 23 23 H 1.09005 * 109.47106 * 172.20103 * 1 2 3 24 24 H 1.08997 * 109.47105 * 240.00154 * 2 1 3 25 25 H 1.08996 * 109.47033 * 120.00130 * 2 1 3 26 26 H 0.97002 * 120.00164 * 180.02562 * 8 7 5 27 27 H 1.00898 * 111.00106 * 327.22914 * 13 3 2 28 28 H 1.08998 * 109.47063 * 63.27495 * 14 13 3 29 29 H 1.08995 * 109.47205 * 303.27334 * 14 13 3 30 30 H 1.08997 * 109.47403 * 302.35373 * 15 14 13 31 31 H 1.08995 * 109.47228 * 62.35356 * 15 14 13 32 32 H 1.09007 * 109.46832 * 54.68947 * 17 16 15 33 33 H 1.08992 * 109.47273 * 174.68492 * 17 16 15 34 34 H 0.96703 * 113.99641 * 179.97438 * 18 17 16 35 35 H 1.09003 * 117.49883 * 359.97438 * 19 16 15 36 36 H 1.09005 * 117.50162 * 145.02222 * 19 16 15 37 37 H 1.08996 * 117.50182 * 214.98039 * 20 16 15 38 38 H 1.09001 * 117.49838 * 0.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.7072 1.9455 -0.9080 5 6 3.5461 1.4428 0.0512 6 1 4.0583 1.9203 0.8734 7 6 4.2700 0.8335 -0.9516 8 7 3.6463 0.2517 -1.9526 9 14 6.1370 0.8345 -0.8885 10 1 6.5908 0.1496 0.3485 11 1 6.6728 0.1205 -2.0752 12 1 6.6316 2.2347 -0.8889 13 7 1.5099 2.1493 1.1737 14 6 1.4932 3.6012 0.9507 15 6 1.0131 4.3066 2.2207 16 6 0.9397 5.8141 1.9699 17 6 2.2805 6.5077 1.7205 18 8 3.0807 6.4365 2.9023 19 6 -0.1352 6.6035 2.7197 20 6 -0.2817 6.3465 1.2178 21 1 -0.3634 0.3883 0.9514 22 1 -0.3633 0.6297 -0.8121 23 1 -0.3633 -1.0182 -0.1395 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 4.1556 -0.1773 -2.6579 27 1 0.5910 1.8099 1.4157 28 1 0.8175 3.8346 0.1279 29 1 2.4984 3.9424 0.7034 30 1 0.0250 3.9347 2.4915 31 1 1.7116 4.1071 3.0333 32 1 2.7992 6.0116 0.9001 33 1 2.1067 7.5521 1.4618 34 1 3.9473 6.8569 2.8164 35 1 -0.7904 6.0487 3.3914 36 1 0.1126 7.6171 3.0350 37 1 -0.1301 7.1911 0.5457 38 1 -1.0332 5.6229 0.9020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395915792.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:01 Heat of formation + Delta-G solvation = -61.864343 kcal Electronic energy + Delta-G solvation = -16229.785669 eV Core-core repulsion = 13685.533823 eV Total energy + Delta-G solvation = -2544.251846 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.81684 -38.07029 -36.67966 -34.61946 -33.24214 -30.24239 -28.31900 -27.36598 -24.86484 -23.65740 -22.83377 -21.42681 -19.77360 -18.40061 -18.20203 -16.90518 -16.62025 -16.30218 -16.20769 -15.47699 -14.76743 -14.62199 -14.36898 -13.93048 -13.76083 -13.31680 -13.22537 -13.02747 -12.70271 -12.57074 -12.39317 -12.25435 -12.01537 -11.87516 -11.48235 -11.44684 -11.20030 -11.03457 -10.88504 -10.49343 -10.44771 -8.99205 -8.08007 -6.19681 1.39926 1.41931 1.49902 2.43012 2.73398 3.17021 3.47744 3.56720 3.81620 3.94296 4.22140 4.27237 4.38651 4.49607 4.53046 4.56630 4.63192 4.71165 4.75383 4.78307 4.86173 5.03204 5.08228 5.15035 5.22899 5.27065 5.30291 5.39057 5.40243 5.60168 5.75294 5.87984 6.34834 6.50915 6.91972 6.93426 7.02978 7.49232 8.95760 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.023512 B = 0.007382 C = 0.005977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.607300 B = 3792.013681 C = 4683.553839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.225 3.775 4 H -0.034 1.034 5 C -0.515 4.515 6 H 0.046 0.954 7 C 0.010 3.990 8 N -0.920 5.920 9 Si 0.956 3.044 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.274 1.274 13 N -0.692 5.692 14 C 0.081 3.919 15 C -0.061 4.061 16 C -0.146 4.146 17 C 0.113 3.887 18 O -0.586 6.586 19 C -0.155 4.155 20 C -0.161 4.161 21 H 0.060 0.940 22 H 0.038 0.962 23 H 0.059 0.941 24 H 0.065 0.935 25 H 0.033 0.967 26 H 0.261 0.739 27 H 0.328 0.672 28 H 0.012 0.988 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.393 0.607 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.523 11.455 5.922 14.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C 0.116 3.884 4 H -0.017 1.017 5 C -0.554 4.554 6 H 0.064 0.936 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.781 3.219 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.199 1.199 13 N -0.324 5.324 14 C -0.048 4.048 15 C -0.099 4.099 16 C -0.147 4.147 17 C 0.035 3.965 18 O -0.394 6.394 19 C -0.192 4.192 20 C -0.197 4.197 21 H 0.079 0.921 22 H 0.058 0.942 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.052 0.948 26 H 0.070 0.930 27 H 0.147 0.853 28 H 0.031 0.969 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.242 0.758 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.402 11.045 6.299 14.236 hybrid contribution 0.944 0.094 -1.178 1.512 sum -5.458 11.139 5.121 13.420 Atomic orbital electron populations 1.21767 0.96039 1.01296 1.00713 1.21555 0.94325 0.98718 1.01019 1.18917 0.93523 0.90465 0.85465 1.01693 1.21424 0.92514 1.34674 1.06768 0.93578 1.25689 1.02824 0.95222 0.95074 1.69998 1.36612 1.37736 1.11699 0.85652 0.80511 0.78231 0.77468 1.19911 1.20626 1.19907 1.60563 1.28421 1.03615 1.39829 1.21668 0.98974 0.88299 0.95887 1.20859 1.00845 0.91379 0.96770 1.21402 0.90779 0.94460 1.08061 1.21619 0.89776 0.98438 0.86630 1.86447 1.32772 1.82769 1.37385 1.23053 1.00412 1.01200 0.94509 1.23102 0.98145 1.03269 0.95229 0.92081 0.94237 0.92239 0.91655 0.94784 0.92992 0.85291 0.96944 0.93808 0.91493 0.92529 0.94484 0.91646 0.75769 0.88297 0.87763 0.87414 0.88394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 9.42 71.98 0.68 -4.64 16 2 C -0.12 -5.73 5.38 30.59 0.16 -5.56 16 3 C 0.22 11.75 2.10 44.17 0.09 11.85 16 4 H -0.03 -2.00 7.87 -2.39 -0.02 -2.01 16 5 C -0.52 -29.84 8.47 25.60 0.22 -29.62 16 6 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 7 C 0.01 0.58 5.30 84.66 0.45 1.02 16 8 N -0.92 -54.06 11.34 21.45 0.24 -53.82 16 9 Si 0.96 45.13 29.54 68.60 2.03 47.16 16 10 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 13 N -0.69 -30.75 6.27 -495.45 -3.11 -33.85 16 14 C 0.08 3.24 5.27 86.30 0.45 3.69 16 15 C -0.06 -1.96 5.33 30.59 0.16 -1.80 16 16 C -0.15 -3.91 1.76 -52.18 -0.09 -4.00 16 17 C 0.11 2.93 6.72 71.98 0.48 3.41 16 18 O -0.59 -15.80 13.56 -148.98 -2.02 -17.82 16 19 C -0.15 -3.27 9.94 30.62 0.30 -2.97 16 20 C -0.16 -3.45 9.94 30.62 0.30 -3.15 16 21 H 0.06 2.03 6.52 -2.39 -0.02 2.01 16 22 H 0.04 1.49 8.13 -2.39 -0.02 1.47 16 23 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 24 H 0.06 3.58 6.13 -2.39 -0.01 3.56 16 25 H 0.03 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.33 12.90 6.24 -89.70 -0.56 12.34 16 28 H 0.01 0.49 8.12 -2.39 -0.02 0.47 16 29 H 0.04 1.97 6.85 -2.39 -0.02 1.96 16 30 H 0.07 1.95 8.09 -2.39 -0.02 1.93 16 31 H 0.06 2.06 8.10 -2.39 -0.02 2.04 16 32 H 0.04 1.08 7.06 -2.38 -0.02 1.07 16 33 H 0.07 1.33 8.09 -2.39 -0.02 1.31 16 34 H 0.39 6.95 9.12 -74.06 -0.68 6.28 16 35 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 37 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -65.79 306.97 0.16 -65.63 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -0.20 Total: 24.47 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 3.22 Total: -31.77 kcal Atomic # 7 Polarization: -84.81 SS G_CDS: -2.86 Total: -87.67 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -2.02 Total: -17.82 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.79 0.16 -65.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395915792.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.769 kcal (2) G-P(sol) polarization free energy of solvation -65.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds