Wall clock time and date at job start Mon Mar 30 2020 03:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47051 * 2 1 4 4 H 1.08998 * 109.47553 * 54.61011 * 3 2 1 5 5 C 1.50701 * 109.47129 * 174.60595 * 3 2 1 6 6 H 1.08005 * 119.99945 * 119.99615 * 5 3 2 7 7 C 1.37882 * 120.00198 * 300.00157 * 5 3 2 8 8 N 1.31509 * 119.99966 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 119.99613 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47359 * 90.00341 * 9 7 5 11 11 H 1.48506 * 109.46816 * 210.00062 * 9 7 5 12 12 H 1.48496 * 109.47462 * 329.99887 * 9 7 5 13 13 N 1.46895 * 109.47394 * 294.60505 * 3 2 1 14 14 C 1.46903 * 110.99997 * 297.24040 * 13 3 2 15 15 C 1.46896 * 111.00203 * 173.28442 * 13 3 2 16 16 C 1.52996 * 109.47166 * 287.88696 * 15 13 3 17 17 H 1.08998 * 110.90606 * 60.18728 * 16 15 13 18 18 C 1.55307 * 110.84857 * 183.76679 * 16 15 13 19 19 C 1.54943 * 100.94237 * 152.32550 * 18 16 15 20 20 O 1.43639 * 105.13825 * 323.55869 * 19 18 16 21 21 C 1.43240 * 109.97217 * 24.42303 * 20 19 18 22 22 H 1.08995 * 109.47108 * 185.12955 * 1 2 3 23 23 H 1.08999 * 109.47354 * 305.13203 * 1 2 3 24 24 H 1.09005 * 109.47002 * 65.13294 * 1 2 3 25 25 H 1.09002 * 109.47299 * 240.00020 * 2 1 3 26 26 H 1.09010 * 109.47113 * 119.99746 * 2 1 3 27 27 H 0.97004 * 120.00202 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.46892 * 301.56147 * 14 13 3 29 29 H 1.08997 * 109.47162 * 61.56641 * 14 13 3 30 30 H 1.09003 * 109.46963 * 181.56207 * 14 13 3 31 31 H 1.09010 * 109.47114 * 167.89186 * 15 13 3 32 32 H 1.08997 * 109.47269 * 47.89267 * 15 13 3 33 33 H 1.09007 * 111.12928 * 270.24536 * 18 16 15 34 34 H 1.08997 * 111.12606 * 34.40988 * 18 16 15 35 35 H 1.09003 * 110.31136 * 204.63680 * 19 18 16 36 36 H 1.09006 * 110.39259 * 82.51689 * 19 18 16 37 37 H 1.08998 * 109.83375 * 238.77675 * 21 20 19 38 38 H 1.09000 * 109.90092 * 117.84667 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5410 1.4446 0.1336 6 1 4.1514 1.8874 -0.6397 7 6 4.1353 0.8812 1.2429 8 7 5.4452 0.8835 1.3596 9 14 3.0797 0.1160 2.5805 10 1 2.8598 -1.3208 2.2763 11 1 3.7690 0.2449 3.8895 12 1 1.7711 0.8154 2.6392 13 7 1.6595 2.0964 -1.2592 14 6 2.2890 1.4323 -2.4084 15 6 1.9920 3.5270 -1.2309 16 6 1.0287 4.2559 -0.2920 17 1 1.1010 3.8621 0.7218 18 6 1.2912 5.7865 -0.3103 19 6 -0.1150 6.3304 0.0469 20 8 -1.0373 5.4418 -0.6036 21 6 -0.4213 4.1659 -0.8143 22 1 -0.3633 -1.0235 0.0919 23 1 -0.3634 0.5914 0.8404 24 1 -0.3633 0.4322 -0.9324 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 5.8633 0.4868 2.1399 28 1 3.3725 1.4527 -2.2912 29 1 1.9487 0.3982 -2.4616 30 1 2.0128 1.9533 -3.3252 31 1 1.9029 3.9407 -2.2355 32 1 3.0139 3.6555 -0.8743 33 1 2.0249 6.0685 0.4449 34 1 1.6014 6.1201 -1.3006 35 1 -0.2358 7.3451 -0.3324 36 1 -0.2673 6.3100 1.1261 37 1 -0.4170 3.9285 -1.8781 38 1 -0.9647 3.3964 -0.2660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398874897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:33 Heat of formation + Delta-G solvation = -45.113358 kcal Electronic energy + Delta-G solvation = -17090.317767 eV Core-core repulsion = 14546.792299 eV Total energy + Delta-G solvation = -2543.525469 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.24880 -37.34905 -33.36030 -32.08412 -31.38408 -29.16285 -27.39384 -25.75686 -23.69865 -22.41287 -21.75150 -20.42015 -18.84099 -16.85215 -16.45212 -15.70913 -15.18434 -14.51221 -14.34180 -14.10850 -13.35557 -13.05591 -12.84752 -12.60776 -12.28149 -12.03797 -11.84669 -11.46830 -11.27297 -11.10457 -11.00659 -10.68066 -10.60358 -10.35202 -10.27107 -10.05021 -9.63964 -9.55765 -9.25323 -9.19564 -8.60042 -7.18616 -6.15678 -4.15963 3.22679 3.34004 3.35654 4.18119 4.33832 4.68829 4.97896 5.15165 5.18608 5.31649 5.48255 5.60914 5.82410 5.94754 5.97422 5.99565 6.01649 6.07519 6.12025 6.19523 6.22929 6.35431 6.42892 6.63617 6.66855 6.68163 6.72140 6.81205 6.91214 7.07535 7.21731 7.28459 7.53324 8.05135 8.11242 8.41142 8.86085 9.48002 10.97050 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026287 B = 0.009197 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.894178 B = 3043.726957 C = 3202.341314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.179 3.821 4 H 0.038 0.962 5 C -0.544 4.544 6 H 0.076 0.924 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.886 3.114 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.264 1.264 13 N -0.532 5.532 14 C 0.030 3.970 15 C 0.069 3.931 16 C -0.111 4.111 17 H 0.086 0.914 18 C -0.152 4.152 19 C 0.053 3.947 20 O -0.397 6.397 21 C 0.068 3.932 22 H 0.033 0.967 23 H 0.042 0.958 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.264 0.736 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.856 5.568 -3.318 10.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.160 4.160 3 C 0.071 3.929 4 H 0.056 0.944 5 C -0.582 4.582 6 H 0.094 0.906 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.189 1.189 13 N -0.255 5.255 14 C -0.119 4.119 15 C -0.059 4.059 16 C -0.130 4.130 17 H 0.104 0.896 18 C -0.190 4.190 19 C -0.024 4.024 20 O -0.316 6.316 21 C -0.008 4.008 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.424 5.516 -3.326 11.415 hybrid contribution 0.854 -0.603 1.046 1.478 sum -8.570 4.913 -2.281 10.138 Atomic orbital electron populations 1.21729 0.97385 0.99249 1.01637 1.21939 0.94012 0.99420 1.00666 1.19747 0.94482 0.90464 0.88202 0.94384 1.21599 0.90730 1.39044 1.06833 0.90594 1.24976 0.94714 0.95343 0.97862 1.69912 1.09045 1.45108 1.29505 0.86866 0.80752 0.79887 0.80810 1.20538 1.22634 1.18891 1.62412 1.57522 1.01374 1.04170 1.22236 0.98718 0.98798 0.92135 1.21882 0.97669 0.89211 0.97158 1.22672 0.94999 0.94033 1.01304 0.89599 1.23283 0.97383 0.95718 1.02649 1.23293 0.88255 0.93898 0.96938 1.88335 1.39368 1.23710 1.80223 1.23075 0.92434 0.84403 1.00912 0.94833 0.93913 0.92133 0.92199 0.93608 0.92662 0.94182 0.92174 0.93916 0.92549 0.92706 0.90045 0.90605 0.90423 0.92631 0.91096 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.74 37.16 0.36 -2.20 16 2 C -0.12 -2.61 4.76 -26.73 -0.13 -2.73 16 3 C 0.18 4.00 1.22 -68.87 -0.08 3.92 16 4 H 0.04 0.90 5.59 -51.93 -0.29 0.61 16 5 C -0.54 -14.41 7.45 -34.44 -0.26 -14.67 16 6 H 0.08 2.20 6.16 -52.48 -0.32 1.88 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.81 13.96 55.43 0.77 -26.03 16 9 Si 0.89 21.64 24.41 -169.99 -4.15 17.49 16 10 H -0.28 -6.68 6.83 56.52 0.39 -6.30 16 11 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.26 -6.18 6.53 56.52 0.37 -5.81 16 13 N -0.53 -10.28 4.00 -236.29 -0.94 -11.22 16 14 C 0.03 0.55 8.92 60.07 0.54 1.08 16 15 C 0.07 1.24 4.16 -3.83 -0.02 1.23 16 16 C -0.11 -1.81 2.95 -88.68 -0.26 -2.07 16 17 H 0.09 1.56 6.76 -51.93 -0.35 1.21 16 18 C -0.15 -2.07 6.62 -24.48 -0.16 -2.23 16 19 C 0.05 0.69 7.78 38.18 0.30 0.99 16 20 O -0.40 -6.32 11.36 -35.23 -0.40 -6.72 16 21 C 0.07 1.07 7.15 37.88 0.27 1.34 16 22 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 1.03 7.91 -51.93 -0.41 0.62 16 25 H 0.06 1.25 6.24 -51.93 -0.32 0.93 16 26 H 0.05 1.05 3.22 -51.92 -0.17 0.88 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.04 0.84 6.25 -51.93 -0.32 0.51 16 29 H 0.06 1.08 6.34 -51.93 -0.33 0.76 16 30 H 0.04 0.68 7.97 -51.93 -0.41 0.27 16 31 H 0.06 0.92 7.86 -51.92 -0.41 0.51 16 32 H 0.05 1.13 6.67 -51.93 -0.35 0.79 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.08 0.97 8.04 -51.93 -0.42 0.55 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.11 7.80 -51.93 -0.41 0.70 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 284.35 15.07 4.29 4.29 Total: -1.00 -28.70 284.35 -6.21 -34.90 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.23 Total: 0.69 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: 0.46 Total: -13.39 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.17 Total: -37.26 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.40 Total: -6.72 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.15 Total: 17.49 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.70 -6.21 -34.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398874897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.211 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds