Wall clock time and date at job start Mon Mar 30 2020 03:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47051 * 2 1 4 4 H 1.08998 * 109.47553 * 54.61011 * 3 2 1 5 5 C 1.50701 * 109.47129 * 174.60595 * 3 2 1 6 6 H 1.08005 * 119.99945 * 119.99615 * 5 3 2 7 7 C 1.37882 * 120.00198 * 300.00157 * 5 3 2 8 8 N 1.31509 * 119.99966 * 180.02562 * 7 5 3 9 9 Si 1.86793 * 119.99613 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47359 * 90.00341 * 9 7 5 11 11 H 1.48506 * 109.46816 * 210.00062 * 9 7 5 12 12 H 1.48496 * 109.47462 * 329.99887 * 9 7 5 13 13 N 1.46895 * 109.47394 * 294.60505 * 3 2 1 14 14 C 1.46903 * 110.99997 * 297.24040 * 13 3 2 15 15 C 1.46896 * 111.00203 * 173.28442 * 13 3 2 16 16 C 1.52996 * 109.47166 * 287.88696 * 15 13 3 17 17 H 1.08998 * 110.90606 * 60.18728 * 16 15 13 18 18 C 1.55307 * 110.84857 * 183.76679 * 16 15 13 19 19 C 1.54943 * 100.94237 * 152.32550 * 18 16 15 20 20 O 1.43639 * 105.13825 * 323.55869 * 19 18 16 21 21 C 1.43240 * 109.97217 * 24.42303 * 20 19 18 22 22 H 1.08995 * 109.47108 * 185.12955 * 1 2 3 23 23 H 1.08999 * 109.47354 * 305.13203 * 1 2 3 24 24 H 1.09005 * 109.47002 * 65.13294 * 1 2 3 25 25 H 1.09002 * 109.47299 * 240.00020 * 2 1 3 26 26 H 1.09010 * 109.47113 * 119.99746 * 2 1 3 27 27 H 0.97004 * 120.00202 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.46892 * 301.56147 * 14 13 3 29 29 H 1.08997 * 109.47162 * 61.56641 * 14 13 3 30 30 H 1.09003 * 109.46963 * 181.56207 * 14 13 3 31 31 H 1.09010 * 109.47114 * 167.89186 * 15 13 3 32 32 H 1.08997 * 109.47269 * 47.89267 * 15 13 3 33 33 H 1.09007 * 111.12928 * 270.24536 * 18 16 15 34 34 H 1.08997 * 111.12606 * 34.40988 * 18 16 15 35 35 H 1.09003 * 110.31136 * 204.63680 * 19 18 16 36 36 H 1.09006 * 110.39259 * 82.51689 * 19 18 16 37 37 H 1.08998 * 109.83375 * 238.77675 * 21 20 19 38 38 H 1.09000 * 109.90092 * 117.84667 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5410 1.4446 0.1336 6 1 4.1514 1.8874 -0.6397 7 6 4.1353 0.8812 1.2429 8 7 5.4452 0.8835 1.3596 9 14 3.0797 0.1160 2.5805 10 1 2.8598 -1.3208 2.2763 11 1 3.7690 0.2449 3.8895 12 1 1.7711 0.8154 2.6392 13 7 1.6595 2.0964 -1.2592 14 6 2.2890 1.4323 -2.4084 15 6 1.9920 3.5270 -1.2309 16 6 1.0287 4.2559 -0.2920 17 1 1.1010 3.8621 0.7218 18 6 1.2912 5.7865 -0.3103 19 6 -0.1150 6.3304 0.0469 20 8 -1.0373 5.4418 -0.6036 21 6 -0.4213 4.1659 -0.8143 22 1 -0.3633 -1.0235 0.0919 23 1 -0.3634 0.5914 0.8404 24 1 -0.3633 0.4322 -0.9324 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 5.8633 0.4868 2.1399 28 1 3.3725 1.4527 -2.2912 29 1 1.9487 0.3982 -2.4616 30 1 2.0128 1.9533 -3.3252 31 1 1.9029 3.9407 -2.2355 32 1 3.0139 3.6555 -0.8743 33 1 2.0249 6.0685 0.4449 34 1 1.6014 6.1201 -1.3006 35 1 -0.2358 7.3451 -0.3324 36 1 -0.2673 6.3100 1.1261 37 1 -0.4170 3.9285 -1.8781 38 1 -0.9647 3.3964 -0.2660 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398874897.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:32 Heat of formation + Delta-G solvation = -64.900184 kcal Electronic energy + Delta-G solvation = -17091.175788 eV Core-core repulsion = 14546.792299 eV Total energy + Delta-G solvation = -2544.383490 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52641 -38.93183 -35.00538 -33.98374 -32.80472 -30.34926 -29.23869 -27.19970 -25.45147 -23.90278 -22.98880 -21.83749 -20.57263 -18.79109 -17.68367 -17.25230 -16.63437 -16.17365 -15.91894 -15.48631 -15.03092 -14.59065 -14.26021 -14.06557 -13.81444 -13.73467 -13.47421 -12.90499 -12.79110 -12.69909 -12.42480 -12.21026 -12.01323 -11.87941 -11.75292 -11.63493 -11.36485 -11.34005 -11.03938 -10.68847 -10.39504 -8.89621 -8.32339 -6.35031 1.27899 1.33371 1.43051 2.28991 3.03518 3.03764 3.26778 3.74255 3.88752 4.10441 4.32040 4.35817 4.40477 4.42798 4.54923 4.64065 4.67270 4.77159 4.84857 4.87325 4.93035 5.02380 5.03879 5.12794 5.13224 5.18086 5.24494 5.28917 5.37147 5.46858 5.53417 5.61187 6.11940 6.15120 6.38751 6.50123 6.73611 7.32687 8.83930 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.026287 B = 0.009197 C = 0.008742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.894178 B = 3043.726957 C = 3202.341314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 C 0.185 3.815 4 H 0.031 0.969 5 C -0.533 4.533 6 H 0.038 0.962 7 C 0.016 3.984 8 N -0.948 5.948 9 Si 0.943 3.057 10 H -0.269 1.269 11 H -0.303 1.303 12 H -0.246 1.246 13 N -0.521 5.521 14 C 0.032 3.968 15 C 0.073 3.927 16 C -0.112 4.112 17 H 0.063 0.937 18 C -0.147 4.147 19 C 0.051 3.949 20 O -0.410 6.410 21 C 0.076 3.924 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.263 0.737 28 H 0.007 0.993 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.020 0.980 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.307 5.913 -3.659 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 C 0.077 3.923 4 H 0.049 0.951 5 C -0.572 4.572 6 H 0.057 0.943 7 C -0.181 4.181 8 N -0.588 5.588 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.231 1.231 12 H -0.170 1.170 13 N -0.244 5.244 14 C -0.116 4.116 15 C -0.055 4.055 16 C -0.131 4.131 17 H 0.082 0.918 18 C -0.185 4.185 19 C -0.025 4.025 20 O -0.330 6.330 21 C 0.000 4.000 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.089 0.911 25 H 0.077 0.923 26 H 0.049 0.951 27 H 0.072 0.928 28 H 0.025 0.975 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.038 0.962 33 H 0.103 0.897 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.901 5.870 -3.684 13.772 hybrid contribution 1.669 -0.631 1.051 2.071 sum -10.231 5.239 -2.632 11.792 Atomic orbital electron populations 1.21640 0.94337 1.00870 1.02242 1.21886 0.96700 0.97739 0.99939 1.19592 0.91345 0.91836 0.89534 0.95118 1.21885 0.92960 1.37078 1.05277 0.94340 1.25768 0.95662 0.96323 1.00381 1.70057 1.10994 1.47243 1.30527 0.85931 0.79713 0.79612 0.77637 1.19521 1.23129 1.17025 1.62453 1.56826 1.01986 1.03119 1.22265 0.96538 0.99748 0.93064 1.21896 0.96217 0.88702 0.98732 1.22588 0.95321 0.95689 0.99498 0.91828 1.23283 0.98139 0.93548 1.03557 1.23468 0.87070 0.94563 0.97369 1.88321 1.40228 1.23850 1.80599 1.22946 0.91493 0.84592 1.00968 0.92619 0.93843 0.91115 0.92275 0.95062 0.92773 0.97480 0.91529 0.90767 0.90289 0.96202 0.89671 0.89462 0.87844 0.92054 0.90626 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.36 9.74 71.98 0.70 -3.66 16 2 C -0.12 -5.09 4.76 30.59 0.15 -4.94 16 3 C 0.19 8.20 1.22 44.17 0.05 8.26 16 4 H 0.03 1.43 5.59 -2.39 -0.01 1.42 16 5 C -0.53 -29.01 7.45 25.60 0.19 -28.82 16 6 H 0.04 2.34 6.16 -2.91 -0.02 2.33 16 7 C 0.02 0.94 5.45 84.66 0.46 1.40 16 8 N -0.95 -58.56 13.96 21.45 0.30 -58.26 16 9 Si 0.94 44.74 24.41 68.60 1.67 46.42 16 10 H -0.27 -12.27 6.83 99.48 0.68 -11.59 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.25 -10.86 6.53 99.48 0.65 -10.21 16 13 N -0.52 -19.60 4.00 -901.48 -3.60 -23.20 16 14 C 0.03 1.16 8.92 127.69 1.14 2.30 16 15 C 0.07 2.57 4.16 86.30 0.36 2.93 16 16 C -0.11 -3.51 2.95 -9.53 -0.03 -3.54 16 17 H 0.06 2.28 6.76 -2.39 -0.02 2.26 16 18 C -0.15 -3.72 6.62 32.05 0.21 -3.51 16 19 C 0.05 1.20 7.78 72.65 0.56 1.77 16 20 O -0.41 -11.97 11.36 -148.98 -1.69 -13.67 16 21 C 0.08 2.24 7.15 72.45 0.52 2.76 16 22 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.07 2.16 7.91 -2.38 -0.02 2.14 16 25 H 0.06 2.39 6.24 -2.39 -0.01 2.37 16 26 H 0.03 1.37 3.22 -2.38 -0.01 1.36 16 27 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 28 H 0.01 0.28 6.25 -2.39 -0.01 0.27 16 29 H 0.07 2.30 6.34 -2.39 -0.02 2.28 16 30 H 0.07 2.20 7.97 -2.39 -0.02 2.18 16 31 H 0.08 2.41 7.86 -2.38 -0.02 2.40 16 32 H 0.02 0.84 6.67 -2.39 -0.02 0.82 16 33 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.09 2.01 8.04 -2.39 -0.02 1.99 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.08 2.15 7.80 -2.39 -0.02 2.13 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -62.64 284.35 1.94 -60.71 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.94 Total: 13.07 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 4.32 Total: -25.07 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -3.30 Total: -81.46 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: -1.69 Total: -13.67 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.67 Total: 46.42 kcal Total: -62.64 1.94 -60.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398874897.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.193 kcal (2) G-P(sol) polarization free energy of solvation -62.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds