Wall clock time and date at job start Mon Mar 30 2020 03:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 H 1.08998 * 109.47101 * 56.59351 * 3 2 1 5 5 C 1.50691 * 109.47371 * 176.59543 * 3 2 1 6 6 H 1.08002 * 120.00473 * 120.00202 * 5 3 2 7 7 C 1.37881 * 120.00150 * 299.99934 * 5 3 2 8 8 N 1.31517 * 119.99967 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00062 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46825 * 120.00331 * 9 7 5 12 12 H 1.48499 * 109.46922 * 240.00008 * 9 7 5 13 13 N 1.46901 * 109.46948 * 296.59966 * 3 2 1 14 14 C 1.46901 * 110.99775 * 295.86970 * 13 3 2 15 15 C 1.46902 * 110.99849 * 171.92475 * 13 3 2 16 16 C 1.53003 * 109.47033 * 195.91825 * 15 13 3 17 17 H 1.09005 * 110.80202 * 308.62419 * 16 15 13 18 18 C 1.54813 * 110.90695 * 184.99724 * 16 15 13 19 19 C 1.54104 * 104.18721 * 220.91888 * 18 16 15 20 20 O 1.43749 * 107.29178 * 357.97278 * 19 18 16 21 21 C 1.44383 * 106.97647 * 26.51155 * 20 19 18 22 22 H 1.09004 * 109.47193 * 55.12874 * 1 2 3 23 23 H 1.09002 * 109.47371 * 175.12687 * 1 2 3 24 24 H 1.08997 * 109.47143 * 295.13111 * 1 2 3 25 25 H 1.09004 * 109.47244 * 239.99965 * 2 1 3 26 26 H 1.08999 * 109.46915 * 119.99781 * 2 1 3 27 27 H 0.97000 * 120.00268 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.46564 * 60.00551 * 14 13 3 29 29 H 1.09002 * 109.47210 * 180.02562 * 14 13 3 30 30 H 1.08997 * 109.47626 * 300.00514 * 14 13 3 31 31 H 1.09006 * 109.47099 * 315.91283 * 15 13 3 32 32 H 1.09002 * 109.47412 * 75.91704 * 15 13 3 33 33 H 1.09001 * 110.48684 * 339.59277 * 18 16 15 34 34 H 1.08997 * 110.48734 * 102.24544 * 18 16 15 35 35 H 1.09001 * 109.87711 * 117.39161 * 19 18 16 36 36 H 1.09000 * 109.87865 * 238.54614 * 19 18 16 37 37 H 1.08998 * 110.61293 * 201.43997 * 21 20 19 38 38 H 1.08999 * 110.61764 * 78.44419 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6277 1.9736 0.8579 5 6 3.5446 1.4433 0.0844 6 1 4.1294 1.8951 -0.7032 7 6 4.1747 0.8673 1.1671 8 7 3.4627 0.3166 2.1259 9 14 6.0398 0.8677 1.2713 10 1 6.6023 1.5439 0.0749 11 1 6.4669 1.5919 2.4953 12 1 6.5327 -0.5320 1.3269 13 7 1.6186 2.1108 -1.2384 14 6 2.2356 1.4803 -2.4131 15 6 1.9230 3.5472 -1.1913 16 6 1.1366 4.2714 -2.2858 17 1 1.2857 3.7902 -3.2525 18 6 1.5266 5.7683 -2.3478 19 6 0.1872 6.4989 -2.5647 20 8 -0.8362 5.4943 -2.6650 21 6 -0.3701 4.3428 -1.9291 22 1 -0.3634 0.5876 -0.8432 23 1 -0.3634 -1.0240 -0.0873 24 1 -0.3633 0.4364 0.9304 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9059 -0.0890 2.8874 28 1 1.9370 0.4331 -2.4621 29 1 1.9071 1.9948 -3.3162 30 1 3.3206 1.5454 -2.3326 31 1 1.6414 3.9465 -0.2169 32 1 2.9907 3.6978 -1.3509 33 1 1.9849 6.0823 -1.4101 34 1 2.2012 5.9524 -3.1839 35 1 -0.0187 7.1544 -1.7185 36 1 0.2271 7.0806 -3.4857 37 1 -0.8860 3.4415 -2.2599 38 1 -0.5043 4.4919 -0.8577 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398874902.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:34 Heat of formation + Delta-G solvation = -52.957577 kcal Electronic energy + Delta-G solvation = -16799.871531 eV Core-core repulsion = 14256.005911 eV Total energy + Delta-G solvation = -2543.865620 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.23495 -37.11664 -33.47869 -31.92500 -30.86760 -29.03287 -26.81126 -25.85215 -23.91630 -22.55514 -21.66221 -19.78070 -18.95455 -16.56883 -16.27591 -15.41503 -15.16510 -14.81891 -14.25841 -13.80984 -13.36386 -13.09949 -12.73043 -12.59927 -12.04089 -11.70093 -11.39402 -11.27224 -11.08435 -10.96154 -10.83000 -10.77141 -10.57333 -10.48424 -10.16171 -9.92229 -9.66038 -9.46066 -9.37993 -9.07309 -8.38829 -7.14389 -6.00927 -4.14366 3.23099 3.32092 3.34743 4.19882 4.37128 4.76507 4.98885 5.07136 5.23174 5.32385 5.47890 5.56549 5.83593 5.91820 5.98704 6.07642 6.14677 6.19606 6.27721 6.37570 6.46640 6.49537 6.60453 6.69358 6.69634 6.80709 7.10178 7.11996 7.19130 7.34552 7.60360 7.75234 7.96098 8.14471 8.29885 8.45819 8.96097 9.53266 10.98196 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.007753 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.829805 B = 3610.654241 C = 4168.051956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.213 3.787 4 H 0.037 0.963 5 C -0.543 4.543 6 H 0.057 0.943 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.886 3.114 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.538 5.538 14 C 0.031 3.969 15 C 0.076 3.924 16 C -0.115 4.115 17 H 0.081 0.919 18 C -0.154 4.154 19 C 0.049 3.951 20 O -0.390 6.390 21 C 0.063 3.937 22 H 0.050 0.950 23 H 0.024 0.976 24 H 0.037 0.963 25 H 0.033 0.967 26 H 0.091 0.909 27 H 0.260 0.740 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 6.784 -6.826 10.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.149 4.149 3 C 0.107 3.893 4 H 0.055 0.945 5 C -0.582 4.582 6 H 0.075 0.925 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.261 5.261 14 C -0.118 4.118 15 C -0.053 4.053 16 C -0.134 4.134 17 H 0.099 0.901 18 C -0.192 4.192 19 C -0.028 4.028 20 O -0.309 6.309 21 C -0.013 4.013 22 H 0.069 0.931 23 H 0.044 0.956 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.109 0.891 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.054 0.946 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.650 6.649 -6.789 10.579 hybrid contribution 2.315 0.004 0.378 2.346 sum -2.335 6.652 -6.411 9.529 Atomic orbital electron populations 1.21725 0.98859 0.98525 1.00582 1.21594 0.92220 0.99160 1.01960 1.19290 0.92774 0.91148 0.86093 0.94511 1.21783 0.92838 1.37605 1.05974 0.92538 1.24914 0.97870 0.95061 0.95614 1.69884 1.34816 1.37927 1.09730 0.86636 0.86293 0.77749 0.77894 1.20012 1.21038 1.20971 1.62455 1.57805 1.01139 1.04734 1.22239 0.97871 0.99199 0.92482 1.21805 0.96887 0.89911 0.96672 1.22783 0.95791 0.94108 1.00740 0.90092 1.22979 0.97666 0.95852 1.02722 1.23080 0.87219 0.91552 1.00933 1.88817 1.41784 1.25844 1.74461 1.23543 0.93625 0.88268 0.95871 0.93097 0.95645 0.94348 0.94862 0.89084 0.92943 0.92192 0.94209 0.95037 0.91568 0.94605 0.90579 0.90985 0.92873 0.90584 0.88657 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.85 37.16 0.37 -2.43 16 2 C -0.11 -2.59 5.08 -26.73 -0.14 -2.72 16 3 C 0.21 5.11 1.72 -68.87 -0.12 4.99 16 4 H 0.04 0.98 7.91 -51.93 -0.41 0.57 16 5 C -0.54 -14.21 7.26 -34.44 -0.25 -14.46 16 6 H 0.06 1.49 5.88 -52.49 -0.31 1.19 16 7 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 8 N -0.89 -24.59 11.30 55.43 0.63 -23.97 16 9 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.54 -10.86 3.92 -236.28 -0.93 -11.79 16 14 C 0.03 0.59 8.77 60.07 0.53 1.12 16 15 C 0.08 1.40 3.85 -3.82 -0.01 1.38 16 16 C -0.12 -1.75 3.15 -88.61 -0.28 -2.03 16 17 H 0.08 1.25 6.52 -51.93 -0.34 0.91 16 18 C -0.15 -1.98 6.60 -25.20 -0.17 -2.15 16 19 C 0.05 0.62 7.70 37.73 0.29 0.91 16 20 O -0.39 -6.02 11.52 -35.23 -0.41 -6.43 16 21 C 0.06 0.96 7.11 38.21 0.27 1.23 16 22 H 0.05 0.98 7.57 -51.93 -0.39 0.59 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.03 0.76 6.34 -51.93 -0.33 0.43 16 26 H 0.09 2.39 5.99 -51.93 -0.31 2.08 16 27 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.06 1.16 6.34 -51.93 -0.33 0.83 16 29 H 0.04 0.66 6.47 -51.93 -0.34 0.32 16 30 H 0.03 0.65 6.23 -51.93 -0.32 0.33 16 31 H 0.07 1.26 7.68 -51.93 -0.40 0.86 16 32 H 0.04 0.70 7.42 -51.93 -0.39 0.32 16 33 H 0.08 0.96 7.86 -51.93 -0.41 0.55 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 38 H 0.06 0.92 7.93 -51.93 -0.41 0.51 16 LS Contribution 291.28 15.07 4.39 4.39 Total: -1.00 -27.20 291.28 -7.30 -34.49 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -6.35 Total: -0.12 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 0.40 Total: -12.44 kcal Atomic # 7 Polarization: -35.46 SS G_CDS: -0.30 Total: -35.76 kcal Atomic # 8 Polarization: -6.02 SS G_CDS: -0.41 Total: -6.43 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.20 -7.30 -34.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398874902.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.466 kcal (2) G-P(sol) polarization free energy of solvation -27.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds