Wall clock time and date at job start Mon Mar 30 2020 03:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47381 * 2 1 4 4 H 1.08998 * 109.47101 * 56.59351 * 3 2 1 5 5 C 1.50691 * 109.47371 * 176.59543 * 3 2 1 6 6 H 1.08002 * 120.00473 * 120.00202 * 5 3 2 7 7 C 1.37881 * 120.00150 * 299.99934 * 5 3 2 8 8 N 1.31517 * 119.99967 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00062 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47228 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.46825 * 120.00331 * 9 7 5 12 12 H 1.48499 * 109.46922 * 240.00008 * 9 7 5 13 13 N 1.46901 * 109.46948 * 296.59966 * 3 2 1 14 14 C 1.46901 * 110.99775 * 295.86970 * 13 3 2 15 15 C 1.46902 * 110.99849 * 171.92475 * 13 3 2 16 16 C 1.53003 * 109.47033 * 195.91825 * 15 13 3 17 17 H 1.09005 * 110.80202 * 308.62419 * 16 15 13 18 18 C 1.54813 * 110.90695 * 184.99724 * 16 15 13 19 19 C 1.54104 * 104.18721 * 220.91888 * 18 16 15 20 20 O 1.43749 * 107.29178 * 357.97278 * 19 18 16 21 21 C 1.44383 * 106.97647 * 26.51155 * 20 19 18 22 22 H 1.09004 * 109.47193 * 55.12874 * 1 2 3 23 23 H 1.09002 * 109.47371 * 175.12687 * 1 2 3 24 24 H 1.08997 * 109.47143 * 295.13111 * 1 2 3 25 25 H 1.09004 * 109.47244 * 239.99965 * 2 1 3 26 26 H 1.08999 * 109.46915 * 119.99781 * 2 1 3 27 27 H 0.97000 * 120.00268 * 179.97438 * 8 7 5 28 28 H 1.09004 * 109.46564 * 60.00551 * 14 13 3 29 29 H 1.09002 * 109.47210 * 180.02562 * 14 13 3 30 30 H 1.08997 * 109.47626 * 300.00514 * 14 13 3 31 31 H 1.09006 * 109.47099 * 315.91283 * 15 13 3 32 32 H 1.09002 * 109.47412 * 75.91704 * 15 13 3 33 33 H 1.09001 * 110.48684 * 339.59277 * 18 16 15 34 34 H 1.08997 * 110.48734 * 102.24544 * 18 16 15 35 35 H 1.09001 * 109.87711 * 117.39161 * 19 18 16 36 36 H 1.09000 * 109.87865 * 238.54614 * 19 18 16 37 37 H 1.08998 * 110.61293 * 201.43997 * 21 20 19 38 38 H 1.08999 * 110.61764 * 78.44419 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6277 1.9736 0.8579 5 6 3.5446 1.4433 0.0844 6 1 4.1294 1.8951 -0.7032 7 6 4.1747 0.8673 1.1671 8 7 3.4627 0.3166 2.1259 9 14 6.0398 0.8677 1.2713 10 1 6.6023 1.5439 0.0749 11 1 6.4669 1.5919 2.4953 12 1 6.5327 -0.5320 1.3269 13 7 1.6186 2.1108 -1.2384 14 6 2.2356 1.4803 -2.4131 15 6 1.9230 3.5472 -1.1913 16 6 1.1366 4.2714 -2.2858 17 1 1.2857 3.7902 -3.2525 18 6 1.5266 5.7683 -2.3478 19 6 0.1872 6.4989 -2.5647 20 8 -0.8362 5.4943 -2.6650 21 6 -0.3701 4.3428 -1.9291 22 1 -0.3634 0.5876 -0.8432 23 1 -0.3634 -1.0240 -0.0873 24 1 -0.3633 0.4364 0.9304 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9059 -0.0890 2.8874 28 1 1.9370 0.4331 -2.4621 29 1 1.9071 1.9948 -3.3162 30 1 3.3206 1.5454 -2.3326 31 1 1.6414 3.9465 -0.2169 32 1 2.9907 3.6978 -1.3509 33 1 1.9849 6.0823 -1.4101 34 1 2.2012 5.9524 -3.1839 35 1 -0.0187 7.1544 -1.7185 36 1 0.2271 7.0806 -3.4857 37 1 -0.8860 3.4415 -2.2599 38 1 -0.5043 4.4919 -0.8577 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398874902.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:34 Heat of formation + Delta-G solvation = -69.516824 kcal Electronic energy + Delta-G solvation = -16800.589594 eV Core-core repulsion = 14256.005911 eV Total energy + Delta-G solvation = -2544.583682 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45374 -38.76989 -35.15940 -33.66705 -32.40596 -30.21539 -28.67789 -27.38683 -25.64963 -24.01500 -22.95106 -21.08954 -20.81000 -18.44656 -17.62350 -16.86294 -16.64369 -16.09788 -15.97781 -15.32758 -14.91443 -14.69995 -14.32952 -13.99275 -13.57347 -13.33849 -13.16150 -12.83026 -12.60057 -12.48260 -12.37308 -12.29786 -12.18513 -11.95410 -11.79488 -11.53290 -11.37182 -11.14347 -10.92099 -10.56878 -10.43494 -8.90952 -8.02599 -6.25477 1.35013 1.38589 1.47375 2.39457 3.05959 3.15775 3.42254 3.79717 3.92405 4.14190 4.26821 4.40265 4.53957 4.64130 4.65639 4.75240 4.80345 4.87312 4.93122 4.93631 4.97651 4.98261 5.08229 5.13863 5.19144 5.29734 5.40216 5.45383 5.52024 5.65130 5.81852 5.98835 6.07773 6.20623 6.39918 6.68177 6.96749 7.45560 8.92016 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.029534 B = 0.007753 C = 0.006716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.829805 B = 3610.654241 C = 4168.051956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C 0.220 3.780 4 H 0.003 0.997 5 C -0.550 4.550 6 H 0.051 0.949 7 C 0.021 3.979 8 N -0.911 5.911 9 Si 0.945 3.055 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.533 5.533 14 C 0.036 3.964 15 C 0.082 3.918 16 C -0.108 4.108 17 H 0.084 0.916 18 C -0.149 4.149 19 C 0.046 3.954 20 O -0.404 6.404 21 C 0.066 3.934 22 H 0.060 0.940 23 H 0.044 0.956 24 H 0.031 0.969 25 H 0.032 0.968 26 H 0.060 0.940 27 H 0.261 0.739 28 H 0.057 0.943 29 H 0.069 0.931 30 H 0.012 0.988 31 H 0.052 0.948 32 H 0.021 0.979 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 7.586 -8.203 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.145 4.145 3 C 0.112 3.888 4 H 0.021 0.979 5 C -0.589 4.589 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.551 5.551 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.207 1.207 13 N -0.256 5.256 14 C -0.113 4.113 15 C -0.047 4.047 16 C -0.127 4.127 17 H 0.103 0.897 18 C -0.188 4.188 19 C -0.031 4.031 20 O -0.324 6.324 21 C -0.010 4.010 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.031 0.969 31 H 0.070 0.930 32 H 0.040 0.960 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.659 7.464 -8.180 12.014 hybrid contribution 2.304 -0.207 0.794 2.446 sum -2.355 7.258 -7.386 10.620 Atomic orbital electron populations 1.21587 0.96253 0.99966 1.00676 1.21442 0.94511 0.98224 1.00309 1.19055 0.91509 0.91509 0.86699 0.97889 1.22032 0.94147 1.37078 1.05681 0.93113 1.25606 1.01756 0.95025 0.95514 1.70009 1.36253 1.38646 1.10169 0.85713 0.81657 0.77684 0.77798 1.19673 1.20818 1.20693 1.62415 1.57523 1.02013 1.03646 1.22235 0.96573 0.99475 0.92985 1.21776 0.96556 0.88983 0.97391 1.22659 0.95338 0.95403 0.99270 0.89732 1.22976 0.98358 0.93878 1.03551 1.23276 0.86084 0.91089 1.02637 1.88805 1.42900 1.26269 1.74419 1.23446 0.93491 0.88516 0.95537 0.92079 0.93657 0.94946 0.94924 0.92188 0.92980 0.92408 0.91194 0.96929 0.92961 0.96038 0.90577 0.89264 0.91867 0.88354 0.88842 0.92895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 9.85 71.98 0.71 -4.30 16 2 C -0.11 -4.99 5.08 30.59 0.16 -4.84 16 3 C 0.22 10.68 1.72 44.17 0.08 10.75 16 4 H 0.00 0.17 7.91 -2.39 -0.02 0.16 16 5 C -0.55 -29.16 7.26 25.60 0.19 -28.98 16 6 H 0.05 2.70 5.88 -2.91 -0.02 2.69 16 7 C 0.02 1.12 5.30 84.66 0.45 1.57 16 8 N -0.91 -51.59 11.30 21.45 0.24 -51.35 16 9 Si 0.94 43.10 29.54 68.60 2.03 45.13 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 13 N -0.53 -21.32 3.92 -901.45 -3.53 -24.85 16 14 C 0.04 1.33 8.77 127.69 1.12 2.45 16 15 C 0.08 2.96 3.85 86.30 0.33 3.29 16 16 C -0.11 -3.08 3.15 -9.49 -0.03 -3.11 16 17 H 0.08 2.39 6.52 -2.38 -0.02 2.37 16 18 C -0.15 -3.48 6.60 31.59 0.21 -3.28 16 19 C 0.05 1.01 7.70 72.36 0.56 1.57 16 20 O -0.40 -11.61 11.52 -148.98 -1.72 -13.33 16 21 C 0.07 1.93 7.11 72.66 0.52 2.45 16 22 H 0.06 2.26 7.57 -2.38 -0.02 2.24 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.03 1.50 6.34 -2.38 -0.02 1.48 16 26 H 0.06 3.21 5.99 -2.39 -0.01 3.19 16 27 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 28 H 0.06 2.16 6.34 -2.38 -0.02 2.14 16 29 H 0.07 2.17 6.47 -2.39 -0.02 2.15 16 30 H 0.01 0.50 6.23 -2.39 -0.01 0.49 16 31 H 0.05 2.02 7.68 -2.38 -0.02 2.00 16 32 H 0.02 0.84 7.42 -2.39 -0.02 0.82 16 33 H 0.08 1.78 7.86 -2.39 -0.02 1.76 16 34 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.05 1.60 7.93 -2.39 -0.02 1.58 16 Total: -1.00 -57.80 291.28 2.31 -55.49 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.02 Total: 11.33 kcal Atomic # 6 Polarization: -26.69 SS G_CDS: 4.28 Total: -22.41 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -3.29 Total: -76.20 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -1.72 Total: -13.33 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -57.80 2.31 -55.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398874902.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.032 kcal (2) G-P(sol) polarization free energy of solvation -57.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds