Wall clock time and date at job start Mon Mar 30 2020 03:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47081 * 2 1 4 4 C 1.42907 * 114.00199 * 180.02562 * 3 2 1 5 5 C 1.52999 * 113.38092 * 313.07727 * 4 3 2 6 6 C 1.53511 * 114.17182 * 179.97438 * 4 3 2 7 7 N 1.47471 * 87.93320 * 220.32679 * 6 4 3 8 8 C 1.46900 * 110.99866 * 138.70191 * 7 6 4 9 9 H 1.08996 * 109.47541 * 300.00486 * 8 7 6 10 10 C 1.50703 * 109.46977 * 60.00282 * 8 7 6 11 11 H 1.07998 * 119.99948 * 0.02562 * 10 8 7 12 12 C 1.37883 * 119.99901 * 179.97438 * 10 8 7 13 13 N 1.31514 * 119.99866 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99806 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47206 * 89.99940 * 14 12 10 16 16 H 1.48498 * 109.47347 * 209.99901 * 14 12 10 17 17 H 1.48500 * 109.47223 * 330.00065 * 14 12 10 18 18 C 1.53006 * 109.47303 * 180.02562 * 8 7 6 19 19 C 1.52997 * 109.47127 * 64.99966 * 18 8 7 20 20 C 1.47481 * 87.83710 * 27.01155 * 7 6 4 21 21 H 1.09010 * 109.46738 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47012 * 299.99598 * 1 2 3 23 23 H 1.08992 * 109.47418 * 60.00139 * 1 2 3 24 24 H 1.09004 * 109.47027 * 239.99940 * 2 1 3 25 25 H 1.09005 * 109.47346 * 120.00125 * 2 1 3 26 26 H 1.08987 * 109.47551 * 286.92418 * 5 4 3 27 27 H 1.09005 * 109.46999 * 46.92177 * 5 4 3 28 28 H 1.08996 * 109.46900 * 166.91723 * 5 4 3 29 29 H 1.09002 * 113.47414 * 105.56214 * 6 4 3 30 30 H 1.08997 * 113.52965 * 335.10932 * 6 4 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.46505 * 304.99837 * 18 8 7 33 33 H 1.08996 * 109.46884 * 185.00718 * 18 8 7 34 34 H 1.09002 * 109.47153 * 180.02562 * 19 18 8 35 35 H 1.09001 * 109.46832 * 60.00321 * 19 18 8 36 36 H 1.09004 * 109.47261 * 300.00303 * 19 18 8 37 37 H 1.09004 * 113.47631 * 87.75155 * 20 7 6 38 38 H 1.08996 * 113.48038 * 218.21930 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 4.1124 0.5518 1.0248 6 6 3.9469 2.9059 -0.0012 7 7 4.9868 2.4779 -0.9552 8 6 5.1789 3.4820 -2.0101 9 1 4.2438 3.6229 -2.5523 10 6 5.6012 4.7886 -1.3891 11 1 5.7158 4.8652 -0.3179 12 6 5.8421 5.8859 -2.1885 13 7 5.7030 5.7924 -3.4929 14 14 6.3649 7.5055 -1.4186 15 1 7.8463 7.5560 -1.3296 16 1 5.8808 8.6314 -2.2572 17 1 5.7832 7.6169 -0.0568 18 6 6.2623 3.0034 -2.9787 19 6 5.7801 1.7442 -3.7016 20 6 4.0644 1.4158 -1.3982 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.9505 0.9492 2.0266 27 1 3.6902 -0.4510 0.9592 28 1 5.1819 0.5098 0.8189 29 1 4.3458 3.2250 0.9617 30 1 3.2392 3.6203 -0.4218 31 1 5.8721 6.5645 -4.0552 32 1 7.1723 2.7774 -2.4229 33 1 6.4677 3.7858 -3.7094 34 1 6.5521 1.4030 -4.3913 35 1 4.8700 1.9703 -4.2573 36 1 5.5746 0.9619 -2.9708 37 1 3.3874 1.7318 -2.1920 38 1 4.5628 0.4721 -1.6193 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399932703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:10 Heat of formation + Delta-G solvation = -15.453948 kcal Electronic energy + Delta-G solvation = -16792.948900 eV Core-core repulsion = 14250.709560 eV Total energy + Delta-G solvation = -2542.239340 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.02708 -36.88217 -33.95543 -31.66044 -30.82446 -29.45679 -27.35583 -25.20880 -24.26940 -22.81878 -21.91955 -19.59959 -18.64181 -16.67037 -16.03736 -15.52667 -15.06624 -14.58614 -14.43559 -13.53038 -13.31078 -12.88729 -12.49324 -12.40162 -12.36296 -11.96131 -11.68473 -11.61694 -11.42954 -11.21581 -10.99912 -10.94441 -10.75312 -10.58490 -10.04032 -9.88047 -9.60160 -9.51995 -8.90211 -8.73706 -8.45532 -7.77675 -6.01625 -4.07303 3.31071 3.37392 3.40978 3.90150 4.41455 4.80773 5.01452 5.12944 5.24937 5.28777 5.37817 5.44220 5.57286 5.70911 5.94480 5.95642 6.03124 6.13503 6.19318 6.26582 6.27615 6.36407 6.38188 6.51138 6.57220 6.62510 6.74720 7.00796 7.14298 7.45741 7.53485 7.62387 7.81574 8.07656 8.30407 8.46501 8.98606 9.57625 11.04438 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031592 B = 0.007353 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.088744 B = 3807.288671 C = 4159.080244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.372 6.372 4 C 0.066 3.934 5 C -0.147 4.147 6 C 0.040 3.960 7 N -0.459 5.459 8 C 0.187 3.813 9 H 0.009 0.991 10 C -0.508 4.508 11 H 0.061 0.939 12 C 0.061 3.939 13 N -0.891 5.891 14 Si 0.896 3.104 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.109 4.109 19 C -0.154 4.154 20 C -0.017 4.017 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.261 0.739 32 H 0.039 0.961 33 H 0.095 0.905 34 H 0.031 0.969 35 H 0.038 0.962 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.762 -10.502 5.177 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.291 6.291 4 C 0.027 3.973 5 C -0.204 4.204 6 C -0.089 4.089 7 N -0.184 5.184 8 C 0.081 3.919 9 H 0.027 0.973 10 C -0.546 4.546 11 H 0.079 0.921 12 C -0.141 4.141 13 N -0.530 5.530 14 Si 0.724 3.276 15 H -0.206 1.206 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.147 4.147 19 C -0.211 4.211 20 C -0.147 4.147 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.178 -10.355 5.208 12.695 hybrid contribution -0.306 0.979 -0.179 1.042 sum -5.484 -9.376 5.029 11.969 Atomic orbital electron populations 1.21741 0.94337 1.01705 1.02974 1.22381 0.94871 0.85166 0.99853 1.87980 1.20921 1.25452 1.94758 1.23362 0.79593 0.98603 0.95791 1.21907 1.01992 0.98195 0.98350 1.23614 0.93558 0.92708 0.99064 1.68909 1.28135 1.08764 1.12554 1.19816 0.94772 0.89109 0.88248 0.97330 1.21119 1.46045 0.93848 0.93636 0.92094 1.24929 0.95404 0.98922 0.94827 1.69885 1.49430 1.30325 1.03340 0.86522 0.78829 0.83051 0.79173 1.20645 1.21296 1.19904 1.21512 0.98272 0.95786 0.99153 1.22039 0.99689 0.99875 0.99508 1.24477 0.95481 0.98679 0.96025 0.91572 0.92073 0.91980 0.93715 0.93371 0.92065 0.92623 0.90115 0.90454 0.90757 0.92933 0.94169 0.88730 0.94975 0.94280 0.93472 0.91577 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 37.16 0.38 -1.24 16 2 C 0.05 0.70 6.01 37.16 0.22 0.92 16 3 O -0.37 -6.28 10.35 -35.23 -0.36 -6.65 16 4 C 0.07 1.14 1.55 -90.09 -0.14 1.00 16 5 C -0.15 -2.10 8.94 37.16 0.33 -1.77 16 6 C 0.04 0.81 6.05 -7.56 -0.05 0.76 16 7 N -0.46 -10.01 5.90 -238.00 -1.41 -11.41 16 8 C 0.19 4.76 1.37 -68.86 -0.09 4.66 16 9 H 0.01 0.25 7.52 -51.93 -0.39 -0.14 16 10 C -0.51 -14.01 8.08 -34.44 -0.28 -14.29 16 11 H 0.06 1.69 7.43 -52.49 -0.39 1.30 16 12 C 0.06 1.68 5.29 -17.82 -0.09 1.59 16 13 N -0.89 -25.47 11.29 55.43 0.63 -24.85 16 14 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 C -0.11 -2.66 5.45 -26.73 -0.15 -2.80 16 19 C -0.15 -3.15 9.13 37.16 0.34 -2.81 16 20 C -0.02 -0.32 4.92 -7.55 -0.04 -0.36 16 21 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.56 6.37 -51.93 -0.33 0.23 16 26 H 0.06 0.82 8.14 -51.94 -0.42 0.40 16 27 H 0.05 0.68 6.13 -51.93 -0.32 0.36 16 28 H 0.08 1.20 7.92 -51.93 -0.41 0.79 16 29 H 0.08 1.52 8.12 -51.93 -0.42 1.09 16 30 H 0.07 1.66 7.89 -51.93 -0.41 1.25 16 31 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 32 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.09 2.56 5.95 -51.93 -0.31 2.25 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.90 5.09 -51.93 -0.26 0.63 16 37 H 0.07 1.34 7.54 -51.93 -0.39 0.94 16 38 H 0.07 1.26 6.77 -51.93 -0.35 0.91 16 LS Contribution 295.67 15.07 4.46 4.46 Total: -1.00 -28.69 295.67 -7.77 -36.46 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -6.51 Total: -0.11 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 0.44 Total: -14.34 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: -0.78 Total: -36.26 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.36 Total: -6.65 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.69 -7.77 -36.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399932703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.005 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds