Wall clock time and date at job start Mon Mar 30 2020 03:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42894 * 109.47081 * 2 1 4 4 C 1.42907 * 114.00199 * 180.02562 * 3 2 1 5 5 C 1.52999 * 113.38092 * 313.07727 * 4 3 2 6 6 C 1.53511 * 114.17182 * 179.97438 * 4 3 2 7 7 N 1.47471 * 87.93320 * 220.32679 * 6 4 3 8 8 C 1.46900 * 110.99866 * 138.70191 * 7 6 4 9 9 H 1.08996 * 109.47541 * 300.00486 * 8 7 6 10 10 C 1.50703 * 109.46977 * 60.00282 * 8 7 6 11 11 H 1.07998 * 119.99948 * 0.02562 * 10 8 7 12 12 C 1.37883 * 119.99901 * 179.97438 * 10 8 7 13 13 N 1.31514 * 119.99866 * 0.02562 * 12 10 8 14 14 Si 1.86797 * 119.99806 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47206 * 89.99940 * 14 12 10 16 16 H 1.48498 * 109.47347 * 209.99901 * 14 12 10 17 17 H 1.48500 * 109.47223 * 330.00065 * 14 12 10 18 18 C 1.53006 * 109.47303 * 180.02562 * 8 7 6 19 19 C 1.52997 * 109.47127 * 64.99966 * 18 8 7 20 20 C 1.47481 * 87.83710 * 27.01155 * 7 6 4 21 21 H 1.09010 * 109.46738 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.47012 * 299.99598 * 1 2 3 23 23 H 1.08992 * 109.47418 * 60.00139 * 1 2 3 24 24 H 1.09004 * 109.47027 * 239.99940 * 2 1 3 25 25 H 1.09005 * 109.47346 * 120.00125 * 2 1 3 26 26 H 1.08987 * 109.47551 * 286.92418 * 5 4 3 27 27 H 1.09005 * 109.46999 * 46.92177 * 5 4 3 28 28 H 1.08996 * 109.46900 * 166.91723 * 5 4 3 29 29 H 1.09002 * 113.47414 * 105.56214 * 6 4 3 30 30 H 1.08997 * 113.52965 * 335.10932 * 6 4 3 31 31 H 0.97000 * 119.99365 * 179.97438 * 13 12 10 32 32 H 1.08998 * 109.46505 * 304.99837 * 18 8 7 33 33 H 1.08996 * 109.46884 * 185.00718 * 18 8 7 34 34 H 1.09002 * 109.47153 * 180.02562 * 19 18 8 35 35 H 1.09001 * 109.46832 * 60.00321 * 19 18 8 36 36 H 1.09004 * 109.47261 * 300.00303 * 19 18 8 37 37 H 1.09004 * 113.47631 * 87.75155 * 20 7 6 38 38 H 1.08996 * 113.48038 * 218.21930 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 6 4.1124 0.5518 1.0248 6 6 3.9469 2.9059 -0.0012 7 7 4.9868 2.4779 -0.9552 8 6 5.1789 3.4820 -2.0101 9 1 4.2438 3.6229 -2.5523 10 6 5.6012 4.7886 -1.3891 11 1 5.7158 4.8652 -0.3179 12 6 5.8421 5.8859 -2.1885 13 7 5.7030 5.7924 -3.4929 14 14 6.3649 7.5055 -1.4186 15 1 7.8463 7.5560 -1.3296 16 1 5.8808 8.6314 -2.2572 17 1 5.7832 7.6169 -0.0568 18 6 6.2623 3.0034 -2.9787 19 6 5.7801 1.7442 -3.7016 20 6 4.0644 1.4158 -1.3982 21 1 -0.3633 -1.0278 -0.0005 22 1 -0.3633 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.9505 0.9492 2.0266 27 1 3.6902 -0.4510 0.9592 28 1 5.1819 0.5098 0.8189 29 1 4.3458 3.2250 0.9617 30 1 3.2392 3.6203 -0.4218 31 1 5.8721 6.5645 -4.0552 32 1 7.1723 2.7774 -2.4229 33 1 6.4677 3.7858 -3.7094 34 1 6.5521 1.4030 -4.3913 35 1 4.8700 1.9703 -4.2573 36 1 5.5746 0.9619 -2.9708 37 1 3.3874 1.7318 -2.1920 38 1 4.5628 0.4721 -1.6193 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399932703.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:48:10 Heat of formation + Delta-G solvation = -35.082949 kcal Electronic energy + Delta-G solvation = -16793.800078 eV Core-core repulsion = 14250.709560 eV Total energy + Delta-G solvation = -2543.090518 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 227.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.57334 -38.28797 -35.79937 -33.58962 -31.96642 -30.84589 -29.11364 -26.78767 -26.07557 -24.32848 -23.22039 -21.47101 -20.08921 -18.59817 -17.74469 -16.85963 -16.54501 -16.29543 -15.90035 -15.11688 -14.93509 -14.36694 -14.14442 -13.84426 -13.68531 -13.27927 -13.17530 -13.10546 -12.84635 -12.75613 -12.72727 -12.61894 -12.27920 -12.11625 -11.95366 -11.56010 -11.27707 -11.12852 -10.77014 -10.53549 -10.25185 -9.61667 -8.14167 -6.27394 1.39869 1.40190 1.50744 2.39598 2.65984 3.13447 3.38688 3.48291 3.94528 4.14604 4.22313 4.41633 4.49088 4.50649 4.56478 4.58318 4.62491 4.66900 4.77634 4.82765 4.93492 4.95725 5.01166 5.05615 5.10869 5.19074 5.26622 5.28835 5.32528 5.51850 5.57480 5.70027 6.08838 6.28332 6.40647 6.48651 6.85269 7.41301 8.90992 Molecular weight = 227.16amu Principal moments of inertia in cm(-1) A = 0.031592 B = 0.007353 C = 0.006731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.088744 B = 3807.288671 C = 4159.080244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 O -0.395 6.395 4 C 0.089 3.911 5 C -0.141 4.141 6 C 0.029 3.971 7 N -0.463 5.463 8 C 0.195 3.805 9 H -0.030 1.030 10 C -0.527 4.527 11 H 0.054 0.946 12 C 0.013 3.987 13 N -0.917 5.917 14 Si 0.960 3.040 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.270 1.270 18 C -0.105 4.105 19 C -0.142 4.142 20 C -0.016 4.016 21 H 0.095 0.905 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.044 0.956 31 H 0.262 0.738 32 H 0.034 0.966 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.031 0.969 36 H 0.064 0.936 37 H 0.047 0.953 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.851 -12.124 6.362 14.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.032 4.032 3 O -0.315 6.315 4 C 0.048 3.952 5 C -0.198 4.198 6 C -0.100 4.100 7 N -0.187 5.187 8 C 0.087 3.913 9 H -0.012 1.012 10 C -0.565 4.565 11 H 0.072 0.928 12 C -0.186 4.186 13 N -0.557 5.557 14 Si 0.785 3.215 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.144 4.144 19 C -0.199 4.199 20 C -0.145 4.145 21 H 0.114 0.886 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.273 -11.995 6.399 14.582 hybrid contribution -0.350 1.447 -0.541 1.584 sum -5.623 -10.548 5.859 13.312 Atomic orbital electron populations 1.21771 0.92884 1.03451 1.02400 1.22712 0.96137 0.83264 1.01060 1.87956 1.20314 1.28345 1.94841 1.23129 0.80416 0.96384 0.95222 1.21892 1.01399 0.98899 0.97639 1.23611 0.93054 0.94819 0.98547 1.68821 1.29508 1.08551 1.11824 1.19590 0.93082 0.89691 0.88958 1.01206 1.21399 1.46259 0.95390 0.93437 0.92781 1.25713 0.95400 1.02217 0.95278 1.70017 1.49999 1.31194 1.04448 0.85531 0.78613 0.78956 0.78403 1.19906 1.20811 1.19446 1.21357 0.97775 0.96761 0.98459 1.21900 0.99884 0.98265 0.99851 1.24464 0.94902 0.98256 0.96879 0.88646 0.92154 0.93093 0.93195 0.91298 0.90981 0.89812 0.90562 0.90044 0.93807 0.92864 0.94761 0.91739 0.92815 0.94939 0.91762 0.93515 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 10.28 71.98 0.74 -2.09 16 2 C 0.04 1.02 6.01 71.98 0.43 1.45 16 3 O -0.40 -12.83 10.35 -148.98 -1.54 -14.37 16 4 C 0.09 2.93 1.55 -10.45 -0.02 2.91 16 5 C -0.14 -3.60 8.94 71.98 0.64 -2.95 16 6 C 0.03 1.20 6.05 83.57 0.51 1.70 16 7 N -0.46 -20.35 5.90 -907.27 -5.36 -25.71 16 8 C 0.19 10.19 1.37 44.17 0.06 10.25 16 9 H -0.03 -1.75 7.52 -2.39 -0.02 -1.76 16 10 C -0.53 -29.87 8.08 25.60 0.21 -29.66 16 11 H 0.05 3.06 7.43 -2.91 -0.02 3.04 16 12 C 0.01 0.73 5.29 84.66 0.45 1.18 16 13 N -0.92 -53.86 11.29 21.45 0.24 -53.62 16 14 Si 0.96 44.62 29.54 68.60 2.03 46.64 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 C -0.10 -5.22 5.45 30.60 0.17 -5.06 16 19 C -0.14 -5.72 9.13 71.98 0.66 -5.06 16 20 C -0.02 -0.58 4.92 83.57 0.41 -0.17 16 21 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 22 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.07 1.31 6.37 -2.38 -0.02 1.30 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.08 1.68 6.13 -2.38 -0.01 1.66 16 28 H 0.08 2.05 7.92 -2.39 -0.02 2.03 16 29 H 0.08 3.22 8.12 -2.39 -0.02 3.20 16 30 H 0.04 2.06 7.89 -2.39 -0.02 2.04 16 31 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 32 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 3.60 5.95 -2.39 -0.01 3.59 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.06 2.34 5.09 -2.38 -0.01 2.33 16 37 H 0.05 1.92 7.54 -2.38 -0.02 1.90 16 38 H 0.10 3.07 6.77 -2.39 -0.02 3.06 16 Total: -1.00 -63.22 295.67 0.63 -62.58 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 1.01 Total: 11.97 kcal Atomic # 6 Polarization: -31.75 SS G_CDS: 4.26 Total: -27.49 kcal Atomic # 7 Polarization: -74.21 SS G_CDS: -5.12 Total: -79.33 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -1.54 Total: -14.37 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -63.22 0.63 -62.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399932703.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.501 kcal (2) G-P(sol) polarization free energy of solvation -63.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds